Array 1 41779-46989 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHO01000012.1 Moraxella catarrhalis strain N1 B748ctg9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================== ================== 41779 28 100.0 32 ............................ TGCTTTGTCGTTAACGCCCTTTCTGCCGTTGT 41839 28 100.0 32 ............................ AAGCTTTCGCTTAAGCTATTAACAGACGCTGT 41899 28 100.0 32 ............................ ATCTTAGAACGCTTTCTTCATGCTGAATCTGT 41959 28 100.0 32 ............................ TTGAAACTTGCTGATATGACCTGTCTTGATGG 42019 28 100.0 50 ............................ GCATAGGTCGCTTAGAAAACAAACGCACCCAATCCATTTGCTTAATGTAA 42097 28 100.0 33 ............................ TGTTTGCCAGTGGCGAAAATCACTTTTTTGGAA 42158 28 100.0 33 ............................ GTTTTAGCACTTGCAGCTGGAGCTGGTGTTAGT 42219 28 100.0 32 ............................ GTGAAGCACACGCACTCATCAAAGCAGGTGTG 42279 28 100.0 32 ............................ AACAAATGACCAAAAGGCTAAGCTCACCGCTG 42339 28 100.0 32 ............................ GCCCGTGGCACGCCCTGCAAACAGCTCATCAC 42399 28 100.0 32 ............................ GCTCCGAATATTCGGGGTGGCAGTATCAGCAT 42459 28 100.0 33 ............................ ACACGCACGGTCTGCCAAGCGTTATCGTCTTTT 42520 28 96.4 32 ...................A........ GATGTACAAATATGTCAGATCTCAGGCACCAA 42580 28 100.0 33 ............................ TGCGACCGCCAAGCTCCGATTTTGCTGTATTAA 42641 28 100.0 32 ............................ ACAGCAGGTACGGTTGTACCGTTCAGTGTCGT 42701 28 100.0 32 ............................ AAAAGGGCAGTATTGGGATAACGAAGTTTTAA 42761 28 100.0 33 ............................ GCTTGTTGTGCTTTCAACAGTACCAATCCGCTC 42822 28 100.0 32 ............................ AGCACCCAAACATTTTGCTCGCCAATGTCGCC 42882 28 100.0 32 ............................ AAAAACCCTGTAATAATAGGCGTTGAACAAAT 42942 28 100.0 32 ............................ GTATATCGCCCTGAGGCGTTTATCTATGGCGA 43002 28 100.0 32 ............................ AATTTCTCAAGCGGTGTTAGATTGAGCTGTAC 43062 28 100.0 31 ............................ ACTAAAAAGCCGTCATCTTTAACGATTGACG 43121 28 100.0 32 ............................ CTTGACCGTGCCATCACTGCCAAAGCTGGCGA 43181 28 100.0 32 ............................ ATCAAGACAAGAAAGCTTGATGAAATCAAAAC 43241 28 100.0 32 ............................ CACGACCGCCCAGTGACAATAATTGGTAATCT 43301 28 100.0 32 ............................ AGTCCAACCGCCAAAAAACATAACATTGACAA 43361 28 100.0 32 ............................ AAATTGGCACAGCCGCTGATGGCGTATGGGGT 43421 28 100.0 32 ............................ TGCCAGAACGCTTTGGCAGTATCTAACACAAC 43481 28 100.0 33 ............................ ATTTATTGCAAAACCTTTGATTGGCACAGTCGC 43542 28 100.0 31 ............................ AAAACTTCATCAAGTCAAACAGCCGTTAATC 43601 28 100.0 31 ............................ TAAAAAAGCCCCAAGCTAAATGGGGCGACTG 43660 28 100.0 32 ............................ GAAACAGAAAATTAAAGCAAGCCAAAAATCTT 43720 28 100.0 32 ............................ ACCAACAATCAAAGTTTGTCTGAGCGGATTGG 43780 28 100.0 32 ............................ TTTGGCAGTTTCACCTTTCGGGCTTGCGTTAC 43840 28 100.0 32 ............................ AATATTTGCCGCCATTTGGCGTAATATTCATC 43900 28 100.0 31 ............................ AAAGCCCATGGGCATGCTATGCCACGCAAGC 43959 28 100.0 33 ............................ CATCAGGATCAGCAAAAGTTGGTGATTTGACAA 44020 28 100.0 32 ............................ AATCGTTCTATTAGCGTCGCTTAGCGTGCGTG 44080 28 96.4 32 ..........A................. TTGTTAATAGCAATAGAACGCTTGTGACAGGT 44140 28 100.0 32 ............................ TGCATAGTCTTCGCTGTTGTAGAATTGAATAT 44200 28 100.0 32 ............................ AATCGTTCTATTAGCGTCGCTTAGCGTGCGTG 44260 28 100.0 32 ............................ CAAAAACTGCAAGCACTTGGAATATTGATTTT 44320 28 100.0 32 ............................ ACCAACAATCAAAGTTTGTCCGAGCGGATTAA 44380 28 100.0 32 ............................ TGCGTGTCAATCATATCTCACCTTTATGCAAA 44440 28 100.0 33 ............................ GCCATCCCACAGCCCATCATAGGTGCGAGTGAT 44501 28 100.0 32 ............................ TCGGTGATGGCAGAGATGTACATTTTATCACT 44561 28 100.0 32 ............................ ACGACAAAGAGCTGACATTTTAGCGACATTGC 44621 28 100.0 33 ............................ TTTGGGCAAGCAAGCCTAGCCACACATTCAAAT 44682 28 100.0 32 ............................ TTATATGTTTTACTTTCAAAAAATCAAACACT 44742 28 100.0 32 ............................ TGCCTGACCTCACCCAAGGCATTGATGGGGAT 44802 28 100.0 32 ............................ CAAGGTTGATTTGGCTTGATGGCAATTTGATG 44862 28 100.0 32 ............................ TGCCCCTGCCAAAGTGATTGAGATTAGTGATG 44922 28 100.0 31 ............................ CCAACAAAAACCTACCGATATCGGTAGGTTT 44981 28 96.4 32 ...................A........ GTGCTGAATGTGAAAGTATCGCATGGTCGGCT 45041 28 100.0 32 ............................ ACCAAATCAAATACAATACGATAGCATCTTGG 45101 28 100.0 32 ............................ ATCGGATTATGTTGTTCCAGTTTCAAAATATC 45161 28 100.0 32 ............................ CAGTAGGAGATGGCACGAAATACGCCTGCAAG 45221 28 100.0 32 ............................ ACAGGGCGATAAAAAGCCGATGTTTACGGTAA 45281 28 96.4 32 ...........T................ AAGCATTTGCATATTGTCAGCAATGATTGATA 45341 28 96.4 33 .............C.............. ACCGGTGCAATATGGCAATCATAGCGCCCCGCC 45402 28 96.4 32 .............C.............. GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 45462 28 96.4 32 .............C.............. TCAGGCTCATTGCCTAGGTTGCCGATTAAAAT 45522 28 96.4 32 .............C.............. TCCAAAAACCAGCAGTGATAGCAAAGCCAAAA 45582 28 96.4 32 .............C.............. CACAATACATCGCCCATCGGTAGGCTGTGTAC 45642 28 96.4 32 .............C.............. AACACACCCAACACCGAACAACCAACGGCTAA 45702 28 96.4 31 .............C.............. TAGGGGTGTGCTTGCTACTAGACAACCAAAA 45761 28 96.4 32 .............C.............. TAGGGGTGTGCTTGCTACTAGACAACCAAAAA 45821 28 96.4 32 .............C.............. GAATTCCCAACCTGCGTAATCGTTGCTGTTAT 45881 28 96.4 33 .............C.............. GATAATAGCAATTGTATCTCGTACATAATTGTT 45942 28 96.4 32 .............C.............. TTAAAAACAAACTCAATCTTTGCTGACGATGG 46002 28 96.4 32 .............C.............. TAATGATGATAATCTTTGGCTTAGGATAATCT 46062 28 96.4 32 .............C.............. TTTGTAATTGAATGTAAACACCGTCATCATCA 46122 28 96.4 32 .............C.............. GCTTAATAAAACAATTGCAAGTAGCTGATTAA 46182 28 96.4 33 .............C.............. CTCCCATACTATCGGCATCATCTAGTAACTTTT 46243 28 89.3 32 .............CG........G.... TGTGATATACTCAGCGTGTGCTTTGGCTTTTT 46303 28 96.4 31 .............C.............. TACCAGCCAAAATAAGCGGCTCAATGAGTTT 46362 28 96.4 31 .............C.............. TGTGATATACTCAGCGTGTGCTTTGGCTTTT 46421 28 96.4 31 .............C.............. AGTTTGTTTTACAACCAAATCAGACATTCAA 46480 28 100.0 32 ............................ ACATCAGCAAAGCCATCAATGTACTCTTGGTC 46540 28 100.0 32 ............................ ACATCAGCAAAGCCATCAATGTACTCTTGGTC 46600 28 100.0 33 ............................ CATCAATGTACTCTTGGTCATTTGTGCCAGCAC 46661 28 100.0 32 ............................ CAGTGGACGCTTAAAGTGCAGTCAGGCGGTGT 46721 28 96.4 32 .............C.............. AACACATGAACAAGTCTTGGCAACGCTTAATC 46781 28 100.0 33 ............................ AAAGCTTAACAACGAAAGAACAAGCGTTGTCAA 46842 28 100.0 32 ............................ AAATGAAGCATAATACAATCAAAGATAAGAAA 46902 28 100.0 32 ............................ GCCCAAAATAAATTTGTGCCTTGGTCAAGTAA 46962 28 92.9 0 .........T...C.............. | ========== ====== ====== ====== ============================ ================================================== ================== 87 28 98.8 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTCAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : ATTTCATTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAACAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCGCTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //