Array 1 2339552-2338789 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_021721.1 Lacticaseibacillus paracasei, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2339551	    36	 100.0	    30	....................................	CTAAACGTTCGCGAACCTCATTCAAGCTAA	
   2339485	    36	 100.0	    30	....................................	GCTATCTGGCTTGAATTCCTTAATCGATTT	
   2339419	    36	 100.0	    30	....................................	AAGCCGATGATATAAAGAAAGACGCCCCTT	
   2339353	    36	 100.0	    30	....................................	GAGGCTTACCCCGTCTTTACCAGTTGGTCC	
   2339287	    36	  97.2	    30	..............C.....................	TTGTTCATAGCAGCGTTGGCACGGGTATTG	
   2339221	    36	 100.0	    30	....................................	ATGAAAGCCAGCGAAGGCACATTTTTTACT	
   2339155	    36	 100.0	    30	....................................	CGTGTTATTGTAATTAGTCGCCAAGTCTTG	
   2339089	    36	 100.0	    30	....................................	AACGTTGACCGCTCTGTCTCACGAAACTGG	
   2339023	    36	 100.0	    30	....................................	GAACTTTGTATCGTTTCTCTTTGCGCACGG	
   2338957	    36	 100.0	    30	....................................	ACGTTAAACGTACACCATGCCGCACAGTCC	
   2338891	    36	 100.0	    30	....................................	GACGATCTCGCACATGCTCAGTGATATGCG	
   2338825	    36	  88.9	     0	..........................T..A....CG	|                             	T [2338791]
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.8	    30	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA
# Right flank :  GGTACACTCCCTTTTGGGTGGACAGACCAAATATTTAAGGTCTGTTCTCCTGGAAGGGAGTTTTTTTATGCGGCGGAAGGGAATTCGTTATTCTTTGGAAGAAAAGATTCAATTCGTTAATCGAGTTCTGTCTGGCCAATCACTCATGGATGTTCAGAGGTCTGGGGGACCCCGCCATGTGGCTTTAGGTCGGTGGGTGCACAGCTATCAGCAATGGGGAGCGGCTGGACTCGTCCCGAAGAAACGAGCAACGCGACGCCACCCACGTAAACACAAGACGTATTCCAGAGAGTTCAAGCTTCAGATTGTCCAAGAATACCTGGCGGGTGGGACGTCTTACCCTAAACTATGTGCGGAGTATGACATCTCCAATCCAGCAGTCGTTTACCAATGGGTTTCTCTGTATAATAGTGGTCAACTACTACAGACCACTAGAGGGAGTGCACCCATGACAAAGGGCAAGAAAACAACTTACGTTGAAAGAATCGAAATCGCACAGT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//