Array 1 56635-55332 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000004.1 Thermosipho africanus Ob7 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 56634 30 100.0 37 .............................. ACGTTTATAAATGTAATATAATCTTCTTTTGTAGTGG 56567 30 100.0 36 .............................. AAATCTACAAAATTGAAATTGTATTTGCTATGTAAT 56501 30 100.0 38 .............................. GATTTTTAATGTTATTACAACAAATTTACAAAAACATA 56433 30 100.0 37 .............................. AACATGTGTATGATAAACTCTTCTATTTCTCTTCCAA 56366 30 100.0 36 .............................. ACTTCTTGTGGAATTGCTGCGAGATCTAAATTGGAT 56300 30 100.0 37 .............................. TATTCTACCCAGGACAACCCTGGGTAGAGATAGAAGT 56233 30 100.0 36 .............................. TAGCAATAGATAAGAGACTTAACAGCCAAGACGCAG 56167 30 100.0 38 .............................. ATTTATGTGTTGATAAAATTATCCCGGCGCAGGTTAGG 56099 30 100.0 37 .............................. TGTATATTATCACCTCCCCCTGCGGTTCTTTTTTATT 56032 30 100.0 39 .............................. TTTTAACATGTTATCCCACCTTCCTTTTTGTTTTTTTTA 55963 30 100.0 37 .............................. AATGTTTATTCATGGGCATTCGTAATAGCTCCGCCTA 55896 30 100.0 38 .............................. ATTTCTTTAACGGCACCCAGGCCTTTAGCTGCCTCTGT 55828 30 100.0 37 .............................. TTAAACAAAATTTTGAAAACATAGAGACTTCTTACAA 55761 30 100.0 37 .............................. AGGTTATTAAAAAGAGTTTTATTGCTGACTATTGGTT 55694 30 100.0 35 .............................. AAGGAAGATAACAGCGTTTACTACATGGGAGTTGA 55629 30 100.0 35 .............................. TCTGATTTAACAAACTTTGTTATACGCTCTATAAG 55564 30 100.0 36 .............................. AGATTAACTAATCCAGCTTTTGGTGGTCGGTTAATT 55498 30 100.0 41 .............................. GCTACCATTTTTACAATTTCTCTATATGGTATCTGCGCTGC 55427 30 100.0 35 .............................. CTCTCGTCTCCATACCCAACACGCAACACGTAACG 55362 30 96.7 0 .........................T.... | T [55334] ========== ====== ====== ====== ============================== ========================================= ================== 20 30 99.8 37 GTTTGTACCTTACCTTGTAGGAATTGAAAC # Left flank : TGCACAAGAGCAAAGCGCAAGTACCGAAGAAATGAGTTCAGCTATGGATACTATTAACTCTTCTATACTTTCAATCTCATCAAATCTCGAAGAAGCATCAAACAAACTAGCCAAACAAGAAGATTTAATAAAAGAAACATTCGAAACTTCTAAAAAACTTTTCAAGCTTTCTGAAAAGCTGTTAAATTCAATAAACAGATTTAAAGTAAAAGATTAAAATAAACACCATCAAAACTCTCCGCAAAAGGCGGAGAGTTTTTTATAACACTTTACACTCATTCTTTTACAAATTAAATTTTTATATAAACGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGTGGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAGAAAATTATGTAAATTCAAAGTATTTTACGTTAATATTGTTTAATATTTATTATGATTTTTTCGAAAAGGTTGCAAAAAGTAATGATATGTAATATAATTATAATGTAATCTATG # Right flank : CAATAGATACAGGTATACATTTTGCCTTGTAGCAATCTACAATGATTATCATAAAAAATCTCCACACTTAATGTTTGTGGAGATTTTTTTGTAAAATATTGTCTAAATTAATCTTCCATATTATAATGTTATAAAGCTAATGTGAATTAAAAAGGAAGAATCGAGGAGGTTTAAAAATGATTAACAACATAATTTTTGATCTTGGAAGGGTTCTTATTAACTGGGAACCTGAAAAATACATGAAAAAAGTTTTTGACGAAAAGACAATTTCTTTTCTACTGGAAAAAATATTTAACACTAATGATTGGAACCTTATGGATAAAGGAGTTATTGATGAAAAAACACTCTGGGAAAATAAATTAAATCAATATCCAGAATATAAAAAAGAAATTGAGCACATGAAAAATAAAGTTTTAGATCTACTCACCCCAATTGAAGAAAATACAAAGCTTCTTTATACGCTAAAAGAAAAAGGTTATAATCTATACATTTTATCAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 47197-47894 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000006.1 Thermosipho africanus Ob7 Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 47197 29 100.0 36 ............................. TTCTAGATATAATGGTGGTATTTTTAATACGTCTGA 47262 29 100.0 38 ............................. TTAATATATCTTTGCCTGATCCAAAGATGGACCACCTA 47329 29 100.0 40 ............................. TGCCGTTTGCTATTTTTACAGTACCTGCAGATTGTATTTG 47398 29 100.0 37 ............................. TGGACAAATTGAAATGATTGACGCTCATATAGTCTAT 47464 29 100.0 38 ............................. TGAAGATAATTATGAGAAGTAATAAGGAGGTGTTTTAA 47531 29 100.0 36 ............................. TTCTAGATATAATGGTGGTATTTTTAATACGTCTGA 47596 29 100.0 36 ............................. CTTTAGTACACCTATGGTATCGAGCACTTTGTCTTC 47661 29 100.0 40 ............................. CCCGTGGAAGGCGGTAAGCTCTTTTTAATTGCAAACGGAG 47730 29 100.0 38 ............................. CATAAGTTTGGGATGGTCACTTATTCTTTTAATTAATA 47797 29 100.0 40 ............................. TGGAAAAAGTAAAGTAAGCATATCTGCTAAGTCGCCTGTG 47866 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 100.0 38 GTTTGTACCTTACCTTGTAGGAATTGAAA # Left flank : TTTTGTACCTTATACTAGCCATTTAGAATTATTTATCAGTTTATCTAATAAGTTTATGATTAATATTTTCAATCTAAATTTATTTTTTGTTTGATTAAAAGATAAGTGTATAATCCTTAATTGATTGAGAACTGATTGAATTCAAGAATGATAAAAACAAAAATAGTTATGACATTTTTTAGACATATTCTTTTACAATTTTAAAAAAAGCGTCTCTCTTTTTTGCGTTCTAGAATAAACTAATTTTTTTACTTTGACTAAAGGCAAAATTTTTAATATAATAAATTTTAAAAAAGTATAAAAAAGAAGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGTAGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAAAAAATTATGTAAATTCAAAGTATTTTACGTTAATATTGTTTATTATTTATTATGATTTTTTCAAAAAGGTTGCAAAAAGTGATAATATGTAATATAATTGTAACGTAATATATG # Right flank : ATTTTATTTTACAATCATAGCCAGCTTACGTTCGTAAATTTAGATTTATTTCAAAGAGTTTAAAATTATATATAAATAAAGAACGGGGGACGCTTCATGAATAAAGAGCTAAGAATAAAATTTAAAACTCTCAGTCCTTTGTGGACAGGAAACTATAGAGGAATAACTAATGAAATAAGGCCTTCAAGCTTAATTGGCTCTTTAAGGTTTTGGTTGGATATTATTTGTTATTTTTCTGGTTTACAAATCAATGATTTAGGAAGTTTTGATCCAGAAAAATTTCAAAACTTTATTTTAAAAGAGGGGACTGATTTTGAATCTTTGAACAAAATTTTTTCTGAATTTGGACTAAGTTTATCTTCCAAAATTTTTGGTTGTAATAATTGGGAAGGATGGATTAGGATAAAAGAAATAAAACCAGTCGGGAAATATTGTTTTGGTAACTATTTAAATTTAGATAATGGTTATAGAAAACCGTATTTTTGGGGGACTTTTGAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 65358-63442 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000009.1 Thermosipho africanus Ob7 Contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 65357 30 100.0 43 .............................. AGGCTCTATACCCATGTTCTTACCTCCTTTCTTAAATGTAAAA 65284 30 100.0 44 .............................. GATTCATCTTTTATCATCTCCAAAAACCACGCATTTTCTTGTTC 65210 30 100.0 40 .............................. CCAACTGTTAATGCTGCGATATCTATTTCATCTTGTATGG 65140 30 100.0 50 .............................. TGATGAGTGTGGCCCATCACTAGGATATCAAAATTTAATCTCTCGTTTAG 65060 30 100.0 45 .............................. TTTTGAAAAAATTAGTTTATATGTTCTTTCAATTTCTGAATACGT 64985 30 100.0 41 .............................. GTTCGAACTATCGGCGTGTATATCGACAATAGTATCAACAA 64914 30 100.0 42 .............................. GTAGAAGGATATTTTTATGATACCAAAATTACAGGTAAGTTT 64842 30 100.0 41 .............................. TTATCGTATCGTCCTTCCAGTATTTTTGCAAAATTATTAGG 64771 30 100.0 45 .............................. AAAGTTGTTTGGTCTAACAATCCACTCTAAATCTGCTATAAAAGG 64696 30 100.0 42 .............................. TTCCATCGCGCGCGCAGGTATCTTTTTCTTGTTTCTGTTAAA 64624 30 100.0 42 .............................. AGTTTCCAATCGTCATAATGAGGTTCAGTGTAATAACCTTTT 64552 30 100.0 44 .............................. TGCATCACGTATGCCTGATAGTGTTTGTAAATCGAATTTTTCTT 64478 30 100.0 44 .............................. ATGTAATTACAGAGCTTTTGTCTTCTTTTGATAGAGATAATATA 64404 30 100.0 44 .............................. ACTAGTTGTATATCGTGCTCACTAGTCCGAAATATAAATTCTTT 64330 30 100.0 42 .............................. CCTTTATTATCTCAAAATCTGGTAGTAGATTAAATAATCTTG 64258 30 100.0 42 .............................. TGGGTCTTAACGATTATTTCTATGGCATACTTGAATTGTTTA 64186 30 100.0 40 .............................. TTGTGCGTCGTTTTCGTCGTAAATAAATTCTTGTGTTATA 64116 30 100.0 45 .............................. GAAAACACCGAGGAATTCAATGATCCAGCAAGAGACATAAAACAC 64041 30 100.0 39 .............................. ACCACTATTAGAAGGAATAGCACATGAGAAGAAAAAACA 63972 30 100.0 39 .............................. TGTGTTTTGTAATTTATCATGTAACTTTAACATACCTTC 63903 30 96.7 44 .........A.................... CCATACTTCTTTTCAATTTCTTTTTTAATATTTCTCATTTGCAT 63829 30 100.0 35 .............................. ATTTACCAGTGAGTTGGGCATATAACACAGGTTCA 63764 30 100.0 44 .............................. ATGTAATTACAGAGCTTTTGTCTTCTTTTGATAGAGATAATATA 63690 30 100.0 46 .............................. AATTCTGCGAGCGAGGACTGTGACCCTCTTCTTCTGGTTCATACCC 63614 30 100.0 45 .............................. ATGTCCTCTTGTTTTGACAAAAACCGGTTTTAATGCCTCTCCAGA 63539 28 90.0 39 ....................A..--..... ACAATTTACATCACCGGCCTTTCAATGGAAGGATTTGGT 63472 30 86.7 0 ...................AA...A....T | T [63444] ========== ====== ====== ====== ============================== ================================================== ================== 27 30 99.0 43 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : ATGCAAAAATAGAGGATAAAGATGAGAGGAATGAATGAAAGGAAGCTAAAGGCGCAGATTACATATATGTTACTAGGGCAGCAGTTAACGATATTAATAGACACACTCTCTGTTCATCCTAAGATGATTAGATTGATTGAAAAATAATTTTTACATTGACCAAGCTGTAACTCTAGATATCGAAAATGCCTCTGAAAACAATCTGTTAACTAAATAGAAACTTAATATTAACTAATAAAATTATAGTTGCTGGGTCTAAAACAGAAGAGTGTCTTAACATTATTGTAATCAATGTCAAAAAATTCCTTTTTTACTAATTTATTATTACGGTATTTGTAACGTTTGTGTTAATAATTCAAAATTAGATGATTTTTTAGGAGATGTTTTTAAGTATGAATGATCGTGAAGGCTTATAAATTCTATATTTAACTTACAGTTTACTTCCGCTCAAAGGTTTTGTTACTTTTCTTTGTTATATTTATTTATGTGAATATTTATAG # Right flank : TATTTCTTTAAACGAGTATTTGTTTTTGATATAGTTTTCAAAAAATTTATATTTTTTAAATTGTTTAAAAGGTTCAAGAATATGTAGATCAAAGACCGGTTTATTTTTCACTATTTGTAATGCAATATAAAGGATAGGAATTGTCGAAATTTAATATGTGGAAGATTCTGGATAAATCAAAAAATGAAGAGTCAAGTCTTCAAAGATAAAATACAAAATCATATTCTTACAATTTAATATAAAAAAAACATGGCTCGTCTAGAGCCATGTTTTTTTGAATGGAATAAATTAAAACTTTATTACTCTTTCGCTTTCCTTTACTCGTCCAACTACTTTTCCAGGAAGTTCATCTGTTTCTGAGACATATAACAAACCATATCCCATGTTAAAGGTATTAATAGCTTCGTCAAATTCTACGTATTTTAAAATCCAATCTACAAATTCCTTTTTTTCAATATTTATTTCATATCCTAAATTTCCAAGCAACCTTCTCAACGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 200320-202389 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000001.1 Thermosipho africanus Ob7 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 200320 30 100.0 40 .............................. GACAAACAACTAAACGTCCAAGACACAGCACTAATTAACC 200390 30 100.0 36 .............................. AGATCTAAAATTGTGTTTTTGCTTTGGCTTTCTAAT 200456 30 100.0 43 .............................. AAAAAATAACCGTCTATAACAGCGGTACTATAAAAGTATTAGA 200529 30 100.0 35 .............................. ATATTAAAGCAATAGTGGAAGTAACATATTCAGAT 200594 30 100.0 37 .............................. AAATTAGAAAAAAATACGGTAACATAATTGAAGCAAT 200661 30 100.0 43 .............................. GGCGAGATGTTTGTGTTTATTTTGTTGTTACCAAAAACAAAGA 200734 30 100.0 45 .............................. TTGTTGGAACCATATGATAGCAAAATAAGCGACTATTGGACGTTT 200809 30 100.0 37 .............................. ACGTTATATGTAGGAGAAGCAAAGATAAAATGGATAA 200876 30 100.0 42 .............................. AGTATAGAAGTACAAAAAGGACTCGCGGTTGATGAAACAACT 200948 30 100.0 44 .............................. ACTTAACGAATGCGAGGTGATACAATGGCTTTGGGCACATTAGT 201022 30 100.0 43 .............................. AGAGTAGAGGCATCAGACTTTTTAACCGGGCGCGCGGATTATG 201095 30 100.0 41 .............................. CTTATACTGCTTTACTTATTAGAAATGGCGCGGTAGCACTT 201166 30 100.0 38 .............................. TTATACAGTAAAAAAGATGAATGAAAAGCAATTATATA 201234 30 100.0 41 .............................. GGCATTCAGGCCGCCAAGGCTCAGGCAGCGGACTAGATTAG 201305 30 100.0 40 .............................. TCTTATATGGCGAACAGATAGCATCTGCGCAAGTAACAGC 201375 30 100.0 43 .............................. GTTGTTGAAAAACAAGAAATTCTTTCAATTGATCAAAAGGCAG 201448 30 100.0 43 .............................. AAGAATTCTTAACAAATGCAGAAGCAATATTAAACGAAATTAA 201521 30 100.0 43 .............................. AAAACATAACAGTCAATGGCACGCTAACTGCAACAAAAGTATA 201594 30 100.0 41 .............................. TATCTTAGGGGGTGCTAGTATGACGTTGTGGCCTAATGATA 201665 30 100.0 38 .............................. TTATACTAGCATCACATTCAAACGGGGTTAGCCCCGGA 201733 30 100.0 43 .............................. AACTTCTTATCACGATTACATTACGAAAGCTGGCAAAATCAGT 201806 30 100.0 41 .............................. GGAATTATAAGTGCATTTCGAAGTAACAAACTCTTCGATAT 201877 30 100.0 38 .............................. GGCATGGATTATGACTTTTCTGAAGCTTCGCAACGACC 201945 30 73.3 39 AC.G.TT.CAT................... CAAGAGTAACCGCGAGAGTGACACCGGCTGGAGCAGTAG 202014 30 96.7 33 T............................. TTACAGAACTTATTAACCCCACAAAAGATTTGG 202077 30 100.0 45 .............................. TGCAATATCAAAATGATAACAAAGGGGTTTACGATTTTATTCACA 202152 30 100.0 42 .............................. TATACCTTTTGTATACACACAGTTTAAAGATGTAAGTGCACC 202224 30 100.0 38 .............................. GGGAACAACCATGGAACAATTTCTATGGTTTATTATCG 202292 30 100.0 38 .............................. TTTACCAGGGATGATGATTGTGATGATCAGAAAGAAAA 202360 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 30 30 99.0 40 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : AGCTTTAAAAATATTAAATGAAAAACTTGCAAAAGGTGAAATAACAGAAGAAGAGTACAAAAGAAAGAAAGAATTAATAATGAAAGGAAGATTTTAAAAAGGAGGGATTTTTATGGGTAAATTTATTTTGAAAGTACCAGATATGTCTTGTAAACATTGTGTTATGAGAATAACAAAAGCATTAGAAGAGCTAGGTGAAAAAAACTTTGAAGTTAAATTAGAAAGTAAAACTGTTGAAATTGAAACCGAAAACCTAGAAAATGTAAAAGCAAAATTATCTGAAATTGATTATCCAGTTGAAAGCGTTGAAAGTTTATAGCTATGTAAATATAAATTATTAAAAAACAAAAAGAATGCTCCATTCTTGTCATAGTGCAAGAATGGAGCATTTATTTTTAATAGAAATTTTTAATGAAACTTTTCAGTGAGAATCAATACAGGAATTTCAATAACTAGATTTCAAAAAAAGTGAGAATAGTTTGAAAAATTTGGACTATGCA # Right flank : CCTATAACTATCCTCATAAATAAATATAACAAAAAAAAGTAACAAAACCTTTGAGTGGAAGTAAACGGTAAGTTAAATCTAGAATTTATGAGCTCTTATTTAACTTTATTTTCGGAAACATCTCCTAAAAATTTGTCTAATTTCAGTCTATTAACATAAATGTTACATATGCTATATTATAGATTTAGTAAAAATGGACTTTTTTGAATTTGGTTAAAAATGTGTTAAAAAATTTTCTTTCTTAGAATAACATCAAAAATTTTTTATAGTTAATTTTAAATTTCCTTTTAGTTAATTTTTTTGTTTTTCGGAGACCCTGGCCAAAGTAAAAAATAGGTTAAATTAGAATATAAAAAAAGGGCTACACTTGTTAAAATTGTTTTTGTACTAAACATCGCCAACAAGGAGGTGTAGCCCAATAATATTCACTTCAATATTGTTTAACAACAAAAATTACTCAATAAATTTTCTAACCTTGTCTTTGATAAATCTAAATGAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 241595-240426 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000001.1 Thermosipho africanus Ob7 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 241594 30 100.0 36 .............................. ATTATTTTCAATATGCATTGTTGTACACGGATCATA 241528 30 100.0 42 .............................. GGAAAAAATTATTGATTTAGACACCGACGACATATTTGAAAT 241456 30 100.0 44 .............................. TTGGATTTACAACCGGATGATGTTGTAATTGTTGCCCAATACAA 241382 30 100.0 41 .............................. AAGAAAAATTGCGTGAGCTTGGAAAAGCAGCGAATATACTC 241311 30 100.0 38 .............................. GAAATTTAGATTGGAAGGAATAGAAAAAGAATTTATAT 241243 30 100.0 39 .............................. GCAACAACAGTACTAGCAAACGCGATGGTACGATTATTA 241174 30 100.0 44 .............................. CTAAAATATCAAACAACAAAGCAAAAGAACTTGCTAAAAAATAT 241100 30 100.0 39 .............................. CTTTCCACAACCCCTGATGGGAAGGTTATTTATCGCAAC 241031 30 100.0 40 .............................. TCGTATTAATACCTATCTTATGTGTCCTTATGTATATAAA 240961 30 100.0 38 .............................. TAAAGATACATAACAAAATAAAAAATTATCAGATTAAA 240893 30 100.0 45 .............................. TGGCTACAAAACAACTTTACAAAGAAAAAGTAGATCTCTGGAACA 240818 30 100.0 46 .............................. AACAAAAGAAAGCACGGTTTTTTTTCAGTGCCGCGCTTTCAGGTGT 240742 30 100.0 36 .............................. GCTGGAAGGAAACGTGCAATACAAGAAAATAAAACC 240676 30 100.0 45 .............................. AGCGCGTTACAGCAGAACTTCAAAAAGAAGAACTTGTGATTGACC 240601 30 100.0 45 .............................. TTTTTTCTTTTACACGAAGCAAATAAAAAATTCTGGAAAGGTCCT 240526 30 100.0 41 .............................. GCAACAATTGACGAAATAAATGTTGAACCAATACCGAACGT 240455 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 17 30 100.0 41 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTATACGTCCTTACATAAATATCTATCAAATAATCATCTTCGCTTTTAATAATACTTCTTAGTTTCACTAATCTTTCGGCAGGAACTTCAGGCTCAACTACGTAATTGTATATTGGAGCAATAATACCAAATACAAAACCACCTAAAAATGGCCAAAATTTATTAACATCTTCATTTGCATGAACTCTAGCTAAAGATTCCACTTGTGATGGTGTTGTTAAAAAGTTTTGCTCACCAAAAGAGATTATAATAAAAATACTTATTAAAAGAACTATAAAAAATTTTCTCACAAAAATCCCTCCTTTAAAATTTGCTTTACACTTATAATACGATTTAAACCTTTAAAATCTGACATAAAAAATTGGAGCAATTAATTGCTCCAATTTAAAAAATATAATTTATCCATATCAATTTGTTAAATCATGATTTATTAATAATCTTCTTATATTTTTTCAAATAAGTTCTAAATATAAAACTATATTTTTTAAATAAATAATACA # Right flank : CCTATAACTATTCTCATAAATAAATATAACAAGAAAAAGTAACAAAACCTTTGAGCGGAAGTAAACGGTAAGTTAAATCTAGAATTTATGAGCTTTTATTTAATTTTATCTTCGAAAACATCCCCTTGAAATTTGTCTAATTTTAGTCCGTTAACATAAATGTTACATCTATTATATTATAGAAAAAGTAAAAATAAGCTTTTTTTGAATCTGGTTAAAAGTATGTTAAAAAGATTTTCTTTCATAGAATTACTTCAACACTTTTTTATAGTTAAATTTAAATTTCTTTTTAGTTAATTTTTTTATCTTATTTTCAAACAACTACAAAAGTGAATACACCCGAGTCAATATAAAAAATTATCTATCGATTAATCCTATCATTTTATGATAAGTTGTAAGTGCTTCTATTCTGCTAACTGCTATCCTAGTAATATATATGTCATCTGTTATTTTATTACCTTCTTATTAATCTTCTGTTTTAACTTTTCTATATACCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 256996-256619 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKRG01000001.1 Thermosipho africanus Ob7 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 256995 30 100.0 37 .............................. ACAAATTCATATGTATCCATAATTACACCTTCACTTA 256928 30 100.0 38 .............................. ATGTTTCCGGCACTGGCTCTATGAGTCAACTAGGAAAC 256860 30 100.0 40 .............................. GGACTAGTTACTGCTCCTTGTGGCAAACGTCCTTTATATG 256790 30 100.0 43 .............................. GATTCTAAAACATAGTCGCTTTTTGTTGAACCAAAGAAATCGT 256717 30 100.0 39 .............................. GTACGAAACTGTCTCCAATTTGCAACGGGGATAATTGTT 256648 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== =========================================== ================== 6 30 98.9 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : CAAGAGTGCATCTACTTCCATTTTTTTAACCGATACGCCAAAAATAATATATAAATCTTGCTTTTATAATGTTTTCCCTTTATTTTCTTTTGACTTTCATAAACTATATTTTATTTTTTATCCGCTGCCAATTCTTGATCATAAAAGCAATTTTTTACCCAATTTCAAACTATCTTGGCTGGACTACTAAATAACATTAGAAAAATTATATTAATAAAATAACAATTTATTATTAACAATTAAAAATCACAAAAATATTTTAAGATAAAACGTCATGTTAACACTTTTGTAACCAATTTTGAAAAAAACTCTTTTTTACTAGTTTCCTGTTTTTATATTTGTAACTTTTATGTTAACAAATTAAAATTAGACAAATTTTTAGGAGATGTTTCCGAAGATAAAATTAAATGAAAGCTTATAAATACTACATTTAACTTACTGTTTACTTCCGCTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATATAGTATAG # Right flank : GCATAATGATGTTTACCATAATAATCTTCATCAACATAAGCGTTTAGACTCTATCGTTGAGGTTATTATAGATAAAACATTTATTTTCTTCACTTTATGAAATTTTATAGCTTAATATTATCTAAACAAACAAAAAAAGGAGGGATAACCTCCTTTTATTTTGTTACTTATTATTTATAACTTATAAATTAAATTTAGTTTTTAATTTATCGATTCCTGCAGAAAATCTAATGCTGCTTTTACAAAATATTATTTTTTAAATATTCTCCTAGTTTATTACTGCTCCCTCGTTTTATTTTTTCTTTTAAAAACAGCCCTAGAAATTTGCCTTTTCACTTTCTACTTATACTACTTATATCTGACAACCTTTTTTTACTTTCCTACAACATTCTATGTTTTACTTTATACCATATTGAAAAACGAAGATTTCAATATTGAAAACAATAAATCACTTTTTAAATCTACCATAACCCATAGAAGTTTTTGCACCTATTCCATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //