Array 1 19-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOOB01000046.1 Dickeya dianthicola NCPPB 453 DDI453_contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 ............................ CGGTATCGTCGGTGCCGGTTCCTCCCCATCCA 79 28 100.0 32 ............................ GCGATTTAGTGCCCGCCGGGCGCTGATAGCGC 139 28 100.0 32 ............................ TATCGAGATGACATTGACAGAATGGGTTCGCT 199 28 100.0 32 ............................ ACTTCAACATCACCGGTATCAATGCGCCGTTG 259 28 100.0 32 ............................ CGGCGATTCAAGCGTGACAGCGCCGCTGGCAA 319 28 100.0 32 ............................ TGGTGGGTCAGTGCATCACCGTAAGGTCCCAT 379 28 100.0 32 ............................ CCGATCGATACGTGAGCACTGCTGACATAGTT 439 28 100.0 32 ............................ ATGCCGGAGATCAGCACCGGCCACCACAACCC 499 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 559 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 619 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GCTGCCAGCGCCAGAAAAG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35-525 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOOB01000047.1 Dickeya dianthicola NCPPB 453 DDI453_contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 35 32 100.0 34 ................................ AATCGCACCGAGAATTTCAAGCCAAGGGATTCAT 101 32 100.0 34 ................................ CTCTTTATTGTTGATCGTCGTTAATAATTCTACA 167 32 100.0 33 ................................ CTCTGTCGTGATTTTGGGAGTATTGATGACATG 232 32 100.0 33 ................................ ACTCCATCTGCTTTGGGTGCTGTTGGACATCGA 297 32 100.0 34 ................................ TATATGTGGGGCGGCAAGACCCTATATTACAACA 363 31 96.9 34 .........-...................... ATTTTAAACCCCTCTGGATATTGCCTATACGGCA 428 32 100.0 34 ................................ CTTTGATCCAGACCATCGCTGGTATGGTGTTGTT 494 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 8 32 99.6 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AGATCATCGGTGGTGTTGTCGGGACTTTCCTCGGG # Right flank : TTGACTTCCTGCAGGATCTGCAGCAAGCGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1480224-1479008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001841.1 Dickeya dianthicola NCPPB 453 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1480223 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATGAAC 1480158 32 100.0 33 ................................ TTGTGATGAGCCAGGATGAAATCCAGATTTCAT 1480093 32 100.0 34 ................................ ATATTCCTGAGGGGTGCGCAGGTCACTCACGATA 1480027 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 1479960 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 1479895 32 100.0 34 ................................ CCTTCAGATGATGTGTATGGTTGCCGGAATGCCA 1479829 32 100.0 34 ................................ TCGTGAGCCAGGCGATTCAGCTCGAACGTGAGGT 1479763 32 100.0 35 ................................ CTTTGATCCAGACTATCGGCGGCCTGCTGATGTTT 1479696 32 100.0 34 ................................ TGTCACATGTATTGTCAATTTAATTTACAGCGGG 1479630 32 100.0 33 ................................ GGTAAAATGCAACTGCTCGTAGCCCACGATCTC 1479565 32 100.0 34 ................................ AGAGTAGTAGCAGACTCAAACGCTTTCTTGCCGT 1479499 32 100.0 34 ................................ ATTTTTACCGTCACTGGCTGGCCTGGTGATTTAC 1479433 32 100.0 34 ................................ TATCTCCAGCATCACGCCGCCGATGCTGAACATT 1479367 32 100.0 34 ................................ TTTGGTGATAGCTTACCAATTTTACCCTCCGCCC 1479301 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 1479235 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 1479169 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 1479103 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 1479038 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ =================================== ================== 19 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : GGGGTGGCCAGAACGTTTACTTTCCAATGGGCATGGCGTGGAAAGTCAGCCAGCGCGACCGCCAGATTTTCGCCGCATTCAACGGTCACAATCACCACGACCTGGCGCGACAGTTCGGATGCTCCTTGCAGTGGGTATACAGCGTTGTAAAAAGAGTCAGGAAAGAGGAACTGGCGCGGATGCAAGGCCGGCTGTTTGACGATGACCAGGACGCGGAATAACATTCACGACAGGCCGAACACAAATTTTCTCTGAATTTTTCGACGGCCTGATTTTTTCACATGCTGAAAGAGAATTACACTAACCGTCCTCATTCTTCCCACTTCGACCCGGTTTATCCCATAATTTATCTCACAGGTTTGGTTTCACTTATCTCACTTCTCATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGACGGGGTT # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1513662-1512967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001841.1 Dickeya dianthicola NCPPB 453 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1513661 32 100.0 36 ................................ AGCTCCTCATCAGTTGCCTGCCCGTCAGCATGGCGC 1513593 32 100.0 35 ................................ TTTTTGTGAGTGCCTGTAGTCTTTATCTCAAGCCA 1513526 32 100.0 34 ................................ TCATTCTTCGAACTCTCGTTCATTCTCCTCTCTC 1513460 32 100.0 35 ................................ TCTCTCTATAGTGACAGTCTATTGAGTATTTGAGC 1513393 32 100.0 33 ................................ CCCACATTTACAATTTCACCAGCCCTGTGACGC 1513328 32 100.0 35 ................................ CAGTTCATCCGGCGTGTAAACGCCAAGCAGCACAT 1513261 32 100.0 34 ................................ TCGCTTTCCCGATGCGATCGGCAATCTCTGTAAC 1513195 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 1513129 32 100.0 33 ................................ ATGTTCAAGCAGCTGTTCCCCTATCTGAACAAG 1513064 32 100.0 34 ................................ TTCGGCAAGTCTACTGACAAAGGCCAGGTGACTG 1512998 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : CGTATCAAGTTCCAGACCGAAATGGACGGCCATGTCGCGCCCCACGCGGGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATGCGCGGCGCGATAAATCAGTCATCAGATGCGCGATAAATCTTGCCGCGTTTATTTTCAAATATTGAAATAAAATTTCAGTTAGTTGGGATGTCAGGCCATGTTATTTCAGCATCTGAAACATCAACACGGCTTAGCATGACCAGATACGTTTGCCACGCTTTCAGTGCAGCCTCTTCGTCAGTTGTTGCAATGCCGAGGTTTGCCGCATATGTCAGCTCAGCGATTCTGCTGCTTGCCACAGACTTACGTTTATCCAGCTCTTGCTGCACAACCTTCTTTGCTGCTGTTTTTTGAGCGTCGATGTCAGTAACCCATTGTGTGCCATCCCACACATCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3542697-3542968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001841.1 Dickeya dianthicola NCPPB 453 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3542697 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 3542758 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 3542819 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 3542880 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 3542941 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGTGTCTTCCCCACGCACGTGGGGGTGTTTCTGAGTGCAGTAAGGTTAGAGGAGTAGGCCGAAAGTCTTCCCCACGCACGTGGGGGTGTTTCCGGCAGGACGTGAGACCTTCCGAGTGTGTGCGGGTCTTCCCCACGCACGTGGGGGTGTTTCTGAAACTTTTCCTATTGATTCAGGCGATGTTAGTCTTCCCCACGCACGTGGGGGTGTTTCTGGATGGTAAGTACTACTCACATAGCGCCACGGGTCTTCCCCACGCACGTGGGGGGTGTTTCTGCGCAAGATGTGCTGCAGTGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGTTTCTCCTTCAGCGCAGAGTACGGCGGATACATCTGG # Right flank : CCGATGTCAACAACGGGTAAAAAGTGATCCACTTACCGTCACCACCAACGGTTTAATATTGATCCACCTTGTTTACTCAGGATTAGCTTCTGCGATAACCCCGGCTTTGCGTTTCTGCTTCAGTCTATAGCTCTCCCCCTTTATTTGTACGACGTGCGAGTGGTGTAAGATCCGGTCCAGCATCGCTGATGTCAGAGCTGCATCACCGGCGAACGTCTGATCCCACTGCCCGAACGGCAGGTTAGATGTCAGGATCATCGCGCTCTTCTCGTAACGTTTGGCGATGACCTGGAAGAACAGCTTTGCCTCTTCCTGACTGAACGGCAGATAGCCGATTTCATCGATGATGAGCAGCTTTGGTGCCATCACGCCACGGTGAAGCGTGGTTTTATAGCGACCCTGACGTTGCGCCGTTGACAGCTGAAGCAACAGGTCCGCCGCCGTTGTGAAGCGAACCTTGATGCCCGCACGCACTGCCTCGTAGCCCATGGCTATCGCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3756775-3756266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001841.1 Dickeya dianthicola NCPPB 453 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3756774 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 3756714 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3756654 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 3756594 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 3756534 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 3756474 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3756414 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3756354 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3756294 27 89.3 0 .......................-..CG | GG [3756271] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3765940-3766509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001841.1 Dickeya dianthicola NCPPB 453 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3765940 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 3766000 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 3766060 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3766121 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 3766181 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3766241 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 3766301 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 3766361 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 3766421 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 3766481 27 85.7 0 ....................G..-..CG | AG [3766499] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACAGTTCACTGCCGAGTAGGCAGCTTAGAAATCTTCTGTGAGTTCGCGCACTTCAGACAATGTGTTCACTGCCGAGTAGGCAGCTTAGAAAGTGCCGCCGCCAATGCTGTCGCTGTCGCCGCCGTTCACTGCCGAGTAGGCAGCTTAGAAAGGTGAAGTGCATGGATTCTTTTTCCTGGCAGTGTTCACTGCCGAGTAGGCAGCTTAGAAATTTACAGGCACGGGCATCAAAAATCTCTTTCAGTTCACTGCCGAGTAGGCAGCTTAGAAATACAAAGTGGGTGTTGTGTGATTACGTTAAGTGTTCACTGCCGAGTAGGCAGCTTAGAAAGCCGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGTTGTCGGGA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //