Array 1 23309-22787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAK01000101.1 Streptomyces triticagri strain NEAU-YY421 scaffold101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 23308 33 90.9 28 .............................CAG. CGCGCTCGGCGCCGGCCCATGAGACGTG 23247 33 93.9 28 ..............................A.C AGGGCGTCGACCTGACCGTCGACAGCGT 23186 33 100.0 28 ................................. CGGCGGCCGCTGGGACCACGACAAGCGC 23125 33 87.9 28 .............................GTGA TCGTCGCCAGCGGGATGCGGCCGGTCAG 23064 33 90.9 28 .............................C.GG GATGGGGGGAGATCAAAGGCGCGGTCCA 23003 33 87.9 28 .................A...........T.TC TCGGCGCGGAGCCCCAGTTCCTGGAGAC 22942 31 90.9 32 .....-...............-.........G. GCCCGCGGGGCGCGGTGGGATCTTTCCGGTCG 22879 33 84.8 28 .................C...........GGGC CGCGGTCGTCCCAGGCGTGTGTGCCCTC 22818 32 90.9 0 .......................-....T..C. | ========== ====== ====== ====== ================================= ================================ ================== 9 33 90.9 29 GTCCTTCCCGCCGACGCGGGGGTGTTCCGACAT # Left flank : CTTGCCGCACAGTCGGACGTCCAAAAGCCTCGGATCGCCGTGGCGGCAACAGTTGCCCGCGTCTCCGAGTCCGGCTTCGGTGCTGATCTCCATGCGTGTGTTGTACAGCAGATCGACGCCAACTGCCTGTGAAGAGCGTGCACTTGGCGTACAGTATGAGCGGGTCCAGGAGATCCAGCGGATACACGGCAGGGGATATGCCCCACCGGTTCAGTGACACCGCCCAGCGGGTCCAACCGCCCGTGTAGCCGCCCCGATCTCCGAGGTGAACTGCATGAACAAGTCCGAGAACCGCCGCAACGGGTTCTTCAAGCAGGTTGTCGGCTCCTTCGTCGGCAAGATGCTTGCGATCATCCTGTTTGACTGGTGGTCAGGGCAGTAGTCCCGACCCGTGGCCCGGACATTAGTCCGGGCCACTTTGCTTGCACCGTGACGAACAGACCGCAACCGAGAACGTCATAGAAGATGCAAAGCCGTTGCTAACCTGCAGGTCGCGAAGT # Right flank : GCACTGCGAGGCGAGCCTGGCTCGTCTGCCTTGTCCTCCGCCCCGGGCGGGCACTGGCACGACGCGACGCGCACACTGCTTGGTCGATGCCGGCGCGTATCCGGTACGGGACCGCCATTGCGGCCACCTTGCAGGCGGGACCGGCAACGCCACCTGCCCGCAGGTCGGCGCATGTCAGGCCGATTCGCCGCGGCGGCAGGTCGGCGCGTGCCCTTGGTCGTGGGTGAAGGTTTCGGGCAGGGCGGTCGGGGCGAAGGTCAGGTGGGTGCCAAGGTCGCCGAGGTGACGGACTTCGGCGACGGGGACCTGGCCCCGGCATTCGGGGCACTGGCCGAGGAGTTCGAAGGGCTCGTCTTCGTAGATGGGGTGGAGGGAGAGAAAGGCGTACTTCTCGCCCATGGTTGGGCAGGTTGCCGTGGCGATGATGGGCTCGTCCGGGAGAGTGCGGCGGCGGAGCCAGTCGAGTTCGGTCGTGATGTCGTCGATGGTGAGGCCGAGAA # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTCCCGCCGACGCGGGGGTGTTCCGACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32444-32777 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAK01000101.1 Streptomyces triticagri strain NEAU-YY421 scaffold101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32444 28 100.0 33 ............................ GGTGGCGTCGGGTTTCTGCAGCCGGAAGGTGAT 32505 28 100.0 33 ............................ GGCCCGCGGAGGATCATCCTGGTCTCCGACGGC 32566 28 96.4 33 .....G...................... ACGATCGGGTCGGCGATGCTTCGACGGGCGGCG 32627 28 96.4 33 ........T................... GGGCAGGCACACCCAGACCGGGTCGATGAGGTC 32688 28 100.0 33 ............................ GGCCGGGGCTGCCCGGCTGACATCAGGATGACA 32749 28 85.7 0 ...G..........T.C........A.. | C [32774] ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCTTCCCCGCTGGCGTGGGGGTGTTCC # Left flank : GCGCTGAGACGGCCCAACCCTCACTCTCACTTCGGCGAGGAGAACACAATGGCGGGTAGGCCAGACCGCCTTGCGAAACACCCCCGCATCGGCGGGGCATTGACGATCCCATCGCCCCTGGCCGAACCTGAACGGATGCTCACCGTGCAGCCTGGGTCGGTTACCCTGACAGCCAGCCATGGTCGCCAGCGCCCCCCCACAGCCCTACCGGACAACTTTCGCGGCGCGCTCAGCCAACTGGACCACCGCAGTTGTTTCCGGCAACTTTGGCGGGCAGTTTCGGCGCGCGTGCCGGAACACCTCCGAGAAGCTGTCGCTGACACCGTCGAGAATGGCGCGACTGTCCGCATCTACCCCGCCGACACAGAACAGGGCCGTGCCCTCCGTACGGCCGGAGCTCGACGCCGAGTCCCCACCGACTTCGACGGCCTCACGCCCCTCCCTCCACGACCTCAGGTAAAGAACCTGCAAACCCGCCACGAATGAGCAGGTCACGAAGT # Right flank : CGCAGGGTGATGAGGTTGGCGGGCTGGAGGTGCGGGCCCTCCTGGTGCCGGGCGTCTCGGTTGCCTGTGACTTGGGGCTGCAGCTGTTCCAGTCCTGCACGCCAGTGGGGATCTGCTTGGGCGTGGACGTACGCACAGGACGTTGTCTGCCCGGCGATGGGGAATACAGGCTTAGAAGGTGTGCCTTTGACCGGGGAGGCAAAGATCCGTCGAAATGATGGATCTTGAAGTGGCAGGGCTCGTGTGCGTGTCAGCAGGGCTGGCGGGGCGTTGTCGAGGGCAGATCGATGCGTTCTTTGCTGCTCAGGAGATGTCTGTGCGTGTGCTTCAAGCTTCTACGGTCGCGGTTGTTCTGGCTGCTGCGTTGTCCACAGGGATGAGTGTTCCTGCTGCTGTGGCGGCAGCTTCCGAGTCGGGTGCAGTCCGGTTGTCGGGTGCACGCGATTTCTGCCGGATCACGGCGTCGTCTGCGACGGTGCGGGCGACGCCGAGTAAGGGTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCTGGCGTGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //