Array 1 1321597-1326952 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1321597 25 100.0 40 ......................... GCAGATATTTCAGTAGATATTCTGCTAAGTGTTACTCCTC 1321662 25 100.0 41 ......................... ATTTCATATTCAATTGCTTTCTCAGTGTCGCAACCTAACTT 1321728 25 100.0 38 ......................... TTTTTGTATACCCTAAATCAAATAATATTAATGCAGTT 1321791 25 100.0 38 ......................... TTTGCAAAATTAAGCGCTTTCTCTATCAGCTCAGTTGG 1321854 25 100.0 37 ......................... ATCTTCTGGCGCATCGCCAAGCTTAGGCAGAGCTAGA 1321916 25 100.0 36 ......................... CCCAATCTTTCAATTGCATTTGGCAAAATCCTAGCC 1321977 25 100.0 41 ......................... ATAATGAGTATAGTTAATGAGCGCATCAAGAACAATTATAG 1322043 25 100.0 38 ......................... ATTTATAACAAAAAATTATTGATAAAGGATGATCTCTC 1322106 25 100.0 39 ......................... TTAGTTTGTTGATCATTATTATTTTGTGATTGTTTGTCG 1322170 25 100.0 38 ......................... TTCATTTCGCAGCAACTTCAATAGTTATTGAAGGACAT 1322233 25 100.0 39 ......................... TTCATCTACCAAGAGGCGGTGCTTATGAGTTAGAGGTTC 1322297 25 100.0 39 ......................... GCCTTTTCCAATAAACACCGCATTCTGTTTTAACTTATT 1322361 25 100.0 38 ......................... GTTATAGAACATGGCGAAATGCACAAACTGCATTACCA 1322424 25 100.0 36 ......................... TTCAATATATCATCAGGATTCATTTTTACAATTTTA 1322485 25 100.0 40 ......................... GAAGAAGAGAATAATTATCAAACTCTTGCAAACAATATAA 1322550 25 100.0 37 ......................... TAATATATTGATGCTATATGTCCAAGTTAAAAATAGC 1322612 25 100.0 36 ......................... ATTCTGCTCACCCGCCAGAGGTACACCATTTTTCTA 1322673 25 100.0 39 ......................... AATAGGTCTTGAATCCAGACTTTTCCATTTTCATATAAG 1322737 25 100.0 35 ......................... TACACTACTATCCTGCCTTGCTTAGATACTGCTAT 1322797 25 100.0 36 ......................... AGTGTTGGAGGAAACCAAACAATCGACATCAGAGGT 1322858 25 100.0 39 ......................... AACCTTACTGGGCAGTTATATGCGTATGAACAGCTGTTT 1322922 25 100.0 37 ......................... TTAATAGATCAAGTGCTCTATATTCATAATATTTGCC 1322984 25 100.0 39 ......................... ATCAATTATTGCATTTTCAATTATTGAATAATCAATTGA 1323048 25 100.0 42 ......................... TTAACTAGATTTTCTATTGCTCTCCTTATGGCTTCACTTCTG 1323115 25 100.0 40 ......................... CATCTTTTTCCGTCGCTTTATATCACCTATGGACTCTTCA 1323180 25 100.0 38 ......................... ACCATACCCAACTTCTAACAACGTCGTTCTTAACAACG 1323243 25 100.0 39 ......................... AGTAAATCAAAAAGCAAATAAGTCAGGGGTGGAGAATTC 1323307 25 100.0 34 ......................... TAACGTTTTTAGTTATGTCGTTATCTTCTTCGTT 1323366 25 100.0 43 ......................... TTGTAGTTTGAATGCGAAACCATTTGCTAAGATATTGATAATG 1323434 25 100.0 38 ......................... CGTTATCACAGTTATATTTCTTCTTTAAAATATCATAT 1323497 25 100.0 38 ......................... TTATCCAGACATTAAGCATGTTGTCGTAGAGGTAGCTG 1323560 25 100.0 37 ......................... TACTTTTCCATCTTGAGGTATTGCGTTTAGTTGCACT 1323622 25 100.0 39 ......................... TCTGTCAGTAGCACAAATAATTTTGTTCTCATAAATAGT 1323686 25 100.0 41 ......................... CGCCCATAGGACGGGATTTAGATTTCTTGTAGGATTTGTTT 1323752 25 100.0 41 ......................... GTAAGGGGGCTATCCATCCCCGCCCGTGAGGCTTTCCGCCC 1323818 25 100.0 38 ......................... TGAATCGTTATGGGCTTAGTTAATTCCGTAGTTAAACC 1323881 25 100.0 39 ......................... AACTTAAAGTTGTTATACGTCATTGGAATAACATTCATT 1323945 25 100.0 40 ......................... TTTACGATATTCACGTCGACAGATACCCTTACTGCTGATC 1324010 25 100.0 38 ......................... ATAGAATTGCATCAGACAGCTTTCATACCTCCGCATCT 1324073 25 100.0 40 ......................... ATATCCAACGCTTGAAGTAATATTTGAATGTCAATACTTT 1324138 25 100.0 39 ......................... ATGCATTCCACCTCTGTTTCTTCCTCTTTACGCATTTCT 1324202 25 100.0 36 ......................... CTCTATATTCTACTATCCTCCCTCTCTGCTCTGGCG 1324263 25 100.0 39 ......................... ATCTCTGATTTCTCAGTTCTCTAATTCCGAATACTACAT 1324327 25 100.0 41 ......................... TAAAACTGCTCAAAAATGCTAGAATTATAATTATGGCTATG 1324393 25 100.0 35 ......................... ATAATTATTCAAGATGCGATATTGTTTCAAATTTT 1324453 25 100.0 37 ......................... AAACAACGCAGCAAAAACGAAGAAGATAACGACATAA 1324515 25 100.0 37 ......................... GCAAGGGGTAGACCCGCGACCTGTGGGGCACGCACCC 1324577 25 100.0 39 ......................... ATGTGTCCGTTCGGTGCGATGTATATTTGTACGTCTTTT 1324641 25 100.0 40 ......................... TTATATTACGATAAAAGTGCCAGATATGGTTGTTGGCATT 1324706 25 100.0 40 ......................... CCCACCAGAAAAAAAGAAGGGTGGGGGGCAAGGGCCCCGG 1324771 25 100.0 40 ......................... GCATATATTATTGGCTGAGGTAAGGTCGGCATATCTGTCG 1324836 25 100.0 39 ......................... CCATCCAAGCCTTGATTTGATATTCCTTTTAATGTCTGC 1324900 25 100.0 40 ......................... TTCATTATCCTCAATTTTTTCTATACCCTTGTTGTTCATT 1324965 25 100.0 39 ......................... CCCCACTGGAATGCACCATTTCTTGCAAGTAATACATTT 1325029 25 100.0 40 ......................... ATGCAGTTTGGCCTAAAGGAATATATACGTTAATGTCTGC 1325094 25 100.0 38 ......................... CCATTATTCGGCACTGCATTTAATTGAAGCACTATACT 1325157 25 100.0 39 ......................... AATATTTTGAATATTTGTACACCCATATGAAAAACGCAG 1325221 25 100.0 37 ......................... TATCTCTTATTCGTAAGGGTTAAAACAAAATTATCTT 1325283 25 100.0 40 ......................... TATATTGATGAGTCGAAGAATCTGATGAAGAACTTCCTTG 1325348 25 100.0 35 ......................... TTTTTATTTAAGAACACTGATGGAAAGATCTATAG 1325408 25 100.0 37 ......................... ACCCATATTGAAGAGTTTGAGCATAAAAATGATTCTA 1325470 25 100.0 39 ......................... TTCTCAATTGCCTTTCCCACGATAACCTCAATCCAGTAG 1325534 25 100.0 39 ......................... GAACGAACATGGTAAGCCCTGAGGACCTTGAAAACGATG 1325598 25 100.0 40 ......................... CTCAGCAGATTTAAACTAACGATATTAATTGTACACACTG 1325663 25 100.0 39 ......................... TTAAGTTGTTTTGCTCTATTTAAAACAAAAATAATCCAA 1325727 25 100.0 39 ......................... CAAGTGCAATAGCAAACTACTACTAAATATAACATATAT 1325791 25 100.0 38 ......................... CTATATGGGGTCAGGGTGGAACTAAAATCGTGGCTTTA 1325854 25 100.0 39 ......................... CTTACTTAAGCCTAATATCTCCGCAACTTCATCAATAGT 1325918 25 100.0 41 ......................... GAACTCTCTATTGCTGACGAACTAAGAGAAAATTGTTTCAA 1325984 25 100.0 38 ......................... TCTAACAATGAATCTGTCATAAAGTGCCCGCAACTCTT 1326047 25 100.0 36 ......................... AGATTATCAATCAAGTGATAGAGATATTGCAATTTT 1326108 25 100.0 39 ......................... TGTTAGATACGGCAAGGCAAAGATTACAAACAAGGATGT 1326172 25 100.0 39 ......................... AAAATGGTGCTTATCGCTATTAGGTAGTCGGCGTTGTTT 1326236 25 100.0 36 ......................... ACTACTCTTACTTTTTGCATTCCTTTTGGAGTAGGC 1326297 25 100.0 39 ......................... TATTTACGTGCATAAAGAACATACCTCCAGCGCCTCCTC 1326361 25 100.0 37 ......................... TCGTAAACTTGAAACTGACCCGTATATCCGAATTTAC 1326423 25 100.0 39 ......................... GTATTATTCTCATAATAGGAACCGCCCTAGTGTATGCTA 1326487 25 100.0 37 ......................... CGTGATTACATGGAACATTACTTTTCCACCGAATATT 1326549 25 100.0 39 ......................... TTTATGTTTTCGAGTTCTTCTGGTCTTAACATCACTCTA 1326613 25 100.0 36 ......................... GTCAGTTATACGCTACATATGAAAAGATAAATGAAG 1326674 25 100.0 38 ......................... ATCTCTCTTAGTTTTGTCAAAGCTTCTGACCCGCTCCT 1326737 25 100.0 40 ......................... TCTATCTTTATTGTTACAACTTTTGCATACGACATAATTT 1326802 25 100.0 39 ......................... TCCTCTATCATCTCCTTTAAGCACTGTGTAATCTCACTT 1326866 25 100.0 37 ......................... TAATACTGCAGTAACGGTACAAGTCATTGACAGCGCT 1326928 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 85 25 100.0 38 GATTAATCCCAAAAGGAATTGAAAG # Left flank : GGTAAGAGCTGATGTATATAATCTTTTTGTATTTATGCATATATGATAAAACTTATTCTTAATTCTCAGATAAACGATTTTCATTATATTGGCGGTTATTAATTGGGAAAACAAACGTGCTTAAAAAGCTGTTTAAAAAGATAATGGTGCCTTAAAATGAAAAATTTATAATTGAAGTCGGAATAGTAGTAAACGATTATTTACGTGATGTAACGGTTTTATGAAAGTAAAGAGATAAAGAGAAAACCGGTTAAGTTCGTTTTCATGAAGTTGTTTAAAAGTGTGAAAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTCTATAATAATTGAACGTTTATAAATGATAGGGTGTATTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGGTAGTCATGAAGATTTATAAGTAAGAAAAGAGAAAGAAAGATAGGAAGTATAAAAACACAACA # Right flank : GATATGGTATTCAGTAAATTCATGCTATAGTCAATTTCTTAGTAAGTGCGAAGAGAAATAGCTTTTGTCTATACAAAGAATACCAGTTAAATCCCTTAACCCACTTATTTCCAACATTCCCCATTTAATAGCCCTTTTTATTTCTTTGCAATTATTACGAAAAAGACTATATTTGCAAGTGCTCAAATGTTTCACGTCAAGAATCCGCAACTAACCCGTTCCCTAAGAACTAAGTATATTTTACACTTCTTTAAACTAATGGCTTACCATTGTTTGATGATGTGCATATCAAGTTATGATAAATCTTATAATGAGAATTCCAGCAAATTAAAAGAAGGCATTACATGCCTCGCCTCTAACAGACCTGAGTTCGCAACTGTAGGAAGGAATTTTGAGGGAAGTGAGGATATGGAAACAATATGTTTCCTTTTTGGCTACGTTACGATGAGAGTTACTTGAGATAAAAGAGTTATTAGTTTGCATTGTCTATCTATATAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCCAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1347730-1343786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 1347729 25 100.0 38 ......................... CTACTCTAGAGAAATTGGGGGGCCACCATATGGACATT 1347666 25 100.0 35 ......................... TTAGTCTTCCTCTTGGCGTTGCGTATCTTTATTCG 1347606 25 100.0 38 ......................... TCATCTACGGTTGCAAGTTCCATAGCCAAGTTGTCAAG 1347543 25 100.0 37 ......................... AGTATCATTATATCAAAAGATGTGAGTGATACATTAG 1347481 25 100.0 38 ......................... GGCTGGTGTGGAGTAACAAATCCTGGAAATGCATACTT 1347418 25 100.0 36 ......................... AAAAATTCGACTAGGTAATCTCCAGGCGCAGTTTTC 1347357 25 100.0 39 ......................... CACATCATATCCTGGTAGTAGTGTTGATTTTCAGCTCAA 1347293 25 100.0 38 ......................... CTTTTCACCACCGCTCGGTTCTTATTGATAAATGCGTT 1347230 25 100.0 38 ......................... AGCATATGGATTGAACAAAATCGGTGACCCGGACGCAC 1347167 25 100.0 38 ......................... CCGATTTGCTTTCTGTCCCTGCCCCTCGAGTCCAGATG 1347104 25 100.0 38 ......................... GATTTTCAACTATACTTCACCAACAAATCACTGATGAA 1347041 25 100.0 37 ......................... TTTCTATTTGAAGTTGATTTACTTTAATTTCTTCTTT 1346979 25 100.0 39 ......................... TTCAAAGTAGACATCATTTCATCAGAGATCTCTTTCATG 1346915 25 100.0 41 ......................... ACATCAGGGGATGCAAATCTATCCAGCGTCCACGATATTGG 1346849 25 100.0 39 ......................... ATTTTATCATAAAGATCTCCCCTTGTATATTTCTCTATT 1346785 25 100.0 39 ......................... TTTGCAACATTTTTTATATGTTGAATTCTCCTTGCCAAA 1346721 25 100.0 35 ......................... ATTTGATGATATCGTCAAATTGTATAGAATTTCTG 1346661 25 100.0 36 ......................... TCAGATTCTGGCAGTTGATCCACAAATTTCCTAATT 1346600 25 100.0 35 ......................... ATTTCTTCCTTTGTGACTGTACTATACAGATCCTT 1346540 25 100.0 39 ......................... AACACTTCTTCTTCTACTGTCACCATCATGTTACATCAT 1346476 25 100.0 44 ......................... GTATATTTCAAACCTGGAGATAGCGCAATTGCAATTGTCTTAAG 1346407 25 100.0 36 ......................... CCTTCTATGAGAAGTTTAGTGGTGAAGTGATGCACA 1346346 25 100.0 36 ......................... CTTTTATCTTCTAATTCCACAATTTTACATTCTTCC 1346285 25 100.0 40 ......................... GACTACTAAAGATGTACCACGATTTAGATAAGATGCAGAG 1346220 25 100.0 37 ......................... TCATTGCATAGCTGTCTAACAGTTCTAATAGATCTTC 1346158 25 100.0 37 ......................... CAATATTCATCAAATGGCATCATAATTTTCAATTTCC 1346096 25 100.0 40 ......................... ATTTCTCCACTCATCTTTTCCACCTCCATTATATATCTTG 1346031 25 100.0 35 ......................... ATAATTATTCAAGATGCGATATTGTTTCAAATTTT 1345971 25 100.0 37 ......................... AAACAACGCAGCAAAAACGAAGAAGATAACGACATAA 1345909 25 100.0 37 ......................... GCAAGGGGTAGACCCGCGACCTGTGGGGCACGCACCC 1345847 25 100.0 39 ......................... ATGTGTCCGTTCGGTGCGATGTATATTTGTACGTCTTTT 1345783 25 100.0 36 ......................... GCGTTTCTCTCAGTGGAACTCAAGGGCAGACAATTA 1345722 25 100.0 39 ......................... CCCGAATCCATTAGGTGTAGTTGGAACGAAATATATTAT 1345658 25 100.0 43 ......................... TTAACCAAAATACACGTTTACCCAGATGGCACGCTGGCTAATT 1345590 25 100.0 36 ......................... TTGATAGTCACAGCACCTGGGTCTCCATGATATAAT 1345529 25 100.0 39 ......................... GTTCTAGGCCCTCCACTTTTCACGAGAAAATAAATATCA 1345465 25 100.0 40 ......................... AATAAACTCTTTGCTTTGAACGGCCACTTTGTGGATTTAT 1345400 25 100.0 38 ......................... ACATAGAAGATGTTAGCCTTTGAAATGGTTTAGCTAAT 1345337 25 96.0 40 .........T............... AATGATATTGCATGGTTCAATAACTATAGAGAAACGGCGT 1345272 25 96.0 40 .........T............... CTTTGTGTAAGTGATCGCTTGTACTCGCAATCTTAGCTTG 1345207 25 96.0 39 .........T............... TTACTTCTGATGGCATCCTCAAATCTCGCAATTAGTGCT 1345143 25 96.0 34 .........T............... ATAAATACTTAAAGACAATATACAGACCATTACC 1345084 25 96.0 41 .........T............... AGAACCACACTATATCACTAGCCGAACCGGCAATATTAACA 1345018 25 96.0 37 .........T............... TTACATTCAAATGTTCCATCACTGGTGAAGTTTTGTT 1344956 25 96.0 39 .........T............... CTTACCGTAATATCAGTGTTAATGATCATGGTCTCACTC 1344892 25 96.0 40 .........T............... TTTATTTTCGTTATTACCAAATCACTAATATTTAATATTG 1344827 25 96.0 38 .........T............... TGTAATACTTGAAATCTCCTGCAAACTTTTTCCCTCTG 1344764 25 96.0 40 .........T............... TCACCATACACCTCTTCTAACACTTCCTCGAATGGATTTG 1344699 25 96.0 37 .........T............... ATCCATGCTGAGTTCAACTACGATGAACTGATGCATG 1344637 25 96.0 37 .........T............... TTCTCATCGTAAGGCTTGAAATATATTTTAACACTAG 1344575 25 96.0 39 .........T............... TATCTTCCCTTATAACGTATGTGGCGTTGGGGATTTTAC 1344511 25 96.0 39 .........T............... TTAGAACTTGCTGATATGGGCATGCTTTCTATTACCCTT 1344447 25 96.0 41 .........T............... ATATTATCGAAATCAACTACTCCACCAATATTAAACATTTT 1344381 25 96.0 39 .........T............... CCATTATTCGGTACAGCGTTTAACTGTAACACTATACTA 1344317 25 96.0 39 .........T............... CCATTATTCGGTACAGCGTTTAACTGTAACACTATACTA 1344253 25 96.0 35 .........T............... CGCCTACAACAACAACAACTACCACCACTACCACG 1344193 25 96.0 40 .........T............... TGTACGGGTTGGAAGAGACTCTGAATGAGTTTCTATTACT 1344128 25 96.0 38 .........T............... ATTCTGTCAAAGTATATTACCAGCTTTATTGAAGAATC 1344065 25 96.0 37 .........T............... ATATCTTTTTGGTTATATATTCCAAGTTTCACTTGGT 1344003 25 96.0 39 .........T............... TCAACTTATGCGCAATATGACAATGGAGAAAACGTATTT 1343939 25 96.0 41 .........T............... TTGACAAATATGATATCATAATAGACGCAAGAGGTGTAGAC 1343873 25 96.0 38 .........T............... TTTTGTGTCATCAAAAGTTCATTTAACTCTATCTTCAA 1343810 25 92.0 0 .........T..............T | ========== ====== ====== ====== ========================= ============================================ ================== 63 25 98.3 38 GATTAATCCCAAAAGGAATTGAAAG # Left flank : CCTTTTATATATAATTTATCCTCATAATTATCTATATACCGTACGTTAATAAAAAGTAATTCTGACGTTAAAAAGATTTTACTTTATCAGCCTTAGTGAAATTAGGAAATATTACGTATTTAAAAGTAAGTTTAAAAAGATAATTATACGTTGCAATGAAAGAAAGATGAAAGGAGAGCGATAAGAGATAAAAAATATTTTTCGATATGATACGAAATCAGTGAAACATTATTATCAAATAGAGAACTTCAAACTTCGTTTTTATGAAGTTGTTTAAAAGTGTGAAAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTCTATAATAATTGAACGTTTATAAATGATACCCAATGTTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGGTAGTCATGAAGATTTATAAGTAAGAAAGGAGAAAAGAAAAATAGGAAGTATAAAAACACAACA # Right flank : TACGCAATAGAGTCTAAGTAAAATAATCCTCATTAGAGTGAGAAAATAGCGTTTCATTAACCATTAAGTGATTTTACTTCTACCTCTCCAAAGCCAATGTTCCTACTCTTTCCCACGCCGAAGTAATTTACGTAATCCAATAGCCTCCTAATGTTCTCCCTTATCTTACTGCCTTTTCTAGCACTCAACTCAAACACAACCCATCCCACAAACCCCTTATTGGGTATGTTTCCGTAATAAGCAGTCATAGGTCTTATCCTATAGTTCACCTCTCTAAAGTAGTATAACGTCTTACTACCAGTAACTCCAACGATCTTCTTATCCATATATCTATTCCAGTGGGAGGCTATAGAGTAGAAGAGGAGTGGAACGTAAGGGAATAACACGTATCTGTTCTCTTTTCTTTTCATCCTAGGCCTAGGGGGTTGTAAAAGCGTAGGCGTCTTGAAGTGAACTCTGTAAAATCTGGCGTCCTCTGCCATGACGTTTTCCTTTACTGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCCAAAAGGAATTGAAAG # Alternate repeat : GATTAATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1386561-1384436 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 1386560 24 100.0 41 ........................ AGCTTTTTGCAAGATCTCGTAACAAGTTGGGGGTTCTTCTT 1386495 24 100.0 39 ........................ AACAATTCTGCAACAAAGAGGTTATGATTTAGTTGGGTA 1386432 24 100.0 39 ........................ CAAGAACGAACTTTTAGTATACTTATCAAGACTAAGCAA 1386369 24 100.0 38 ........................ GTTCGGTCAAATTCGGCTAACGCGTCAAGATATTCTTT 1386307 24 100.0 40 ........................ TGGGCCATCGACCGACAACAGCCAACAGCCAACAGCCAAC 1386243 24 100.0 40 ........................ AGGCAAAAGTCTCGGTAATGAAATATCGCAAGAAAATAAA 1386179 24 100.0 41 ........................ AAATGTCAGCTAATTTGACATATTCATTTTCTGGATCTATT 1386114 24 100.0 40 ........................ ACAAAAATGCTCTCTAATGTCTGAGATTTTTTGGGATATA 1386050 24 100.0 40 ........................ GAAAGAAGGAAAGAAGAAATGGCGCATGAGAGAGATAAGC 1385986 24 100.0 42 ........................ AGGGGTTACAGGGTAAAGAATACCGAAATCAGGGACTATGGT 1385920 24 100.0 37 ........................ TTGGCAAACAGTTACTGTACCAGCTAATGGTTCTGCA 1385859 24 100.0 38 ........................ ACAAATCCTGCAATATAAATTGGGTCTTCTTCAGTTAG 1385797 24 100.0 40 ........................ AAATTTTATCAGCATGTCCTTTATAATTTCAGAACAGAAG 1385733 24 100.0 40 ........................ TTCGTTGTAATCGAAGGATAATGTAACACACACTGTTTGT 1385669 24 100.0 39 ........................ TCCATTCGAATCGCACCATATTGTTTATCCTTTTGCGTG 1385606 24 100.0 39 ........................ TATTTACGATACAGGTCCATCCACACACCATAGCCTATT 1385543 24 100.0 37 ........................ AAACTGAACGTACTTTACAAAATATCTGAAAACTCCA 1385482 24 100.0 40 ........................ TTCAGATTTCCATTCTTTTCTAGTTCTAACGTAACCTTTA 1385418 24 100.0 39 ........................ TAAATTCCCCTCCAGACTCTTACGTATTCGATGGGGACG 1385355 24 100.0 42 ........................ AATGGGAGCACCTGAAGATATTGTGACCGGTATTGAGTCACT 1385289 24 100.0 37 ........................ TTTTGCTCAATCTCCTCTTTAATCCGATCGAACTCTT 1385228 24 100.0 38 ........................ GGTTTTGATCCTTGTACTGATGTTAAGTAAAACACTGG 1385166 24 100.0 41 ........................ TACTTGTGCAGATCCGCTCCAACTAACGCTACATGAGTTTA 1385101 24 100.0 40 ........................ CATTAAATTCTGTAATGTTAAGTTATTATCCATTATCTTT 1385037 24 100.0 38 ........................ TGAGGGGGGCTGCATGATTGCCCCCACTTCGTCTGGAT 1384975 24 100.0 40 ........................ CAACTACACAGCAGACCACAACTCAACAAACAACAACATA 1384911 24 100.0 41 ........................ GGGTTTGAAGTACCGTTGGTTACTGTAACTTGTTGATTTGA 1384846 24 100.0 40 ........................ AGTAGTGGAACGTCAGCATCACAACTACAAGTACCACAAA 1384782 24 100.0 42 ........................ ACATAGACCACAATCTCAGCAACATAGTTCGTACTTCCGGTT 1384716 24 100.0 39 ........................ CATCTGGGGCATATTGTACTGTAGAGTCTTGTCTCTTCC 1384653 24 100.0 38 ........................ GTATCACTCCTACCACTACTCCTCGACAATAAGACTGA 1384591 24 100.0 41 ........................ CCGGTGCATGTTTATACCAGTGTCCGCGGTGTGGTAGATGG 1384526 24 100.0 43 ........................ AACATCTCTCCACCTAACACAATCCGATTAAAGTATATCCTCA 1384459 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 34 24 100.0 40 GATAATCTCTTATAGAATTGAAAG # Left flank : TCTATTTCGTAAATCCTTGGAGGAGGGTAGTTTAACCTGGAAATTTGAGCTCTTAAGCTCTCTATTGCAGCCCTAGTTCCAGAGACAATTGGAGAGGGAACAACGATTACGAGGCTATCTTCTTTCTGTGCCGAGGTTTCATTTAGAAGCCTTAACAGAAAAGTTTCATTAAATCCCATGGTGACAAAATAGGACTTCATACCATAAAATTAGTATTACCGATTCATAAACTTTTCTATAACTTATAAGCTTGATGATGAGAGAAATATCTAGTAATTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGGGGTCGTTTGATGTTAGTTTCTTAGGAGGTAGGGCGTTATCCTCAAATCATTACCTCCATGAAGAATACCTTATCCTCCCGGGCTTAGTAGGGATTGAAAAAACTATAAAAAAATTGAAAACGCAAACCAGAGAAAAGCTTATAAATAACTAAGGAGAAAATAAGAAATAGTAAGAGATTAATAAACCCTCA # Right flank : GGTAGGATTAACAACACACACTGAGACGTGATCCAAGTTGTTTAAAATGGCAATTCCTAACTAATATTAATAAGAAATTGGTACGGGAGTGTTCTCATGCAGTCATCTTATTCCACAATTAGTAGTAAAATTATATCAAATTTACTCTAATATACTATACTCCCTTCAGGTAAGTCTCGTTCAATAACTTTTCTCCCTTGAAAATACGTGAAGATACATTACATTCAACAAGGCCAAACTCCACCATCCCACTTCCTATTAACAGCTTTAGTGTCCCTAGTCAGCCTCGCTAACCTACCAAGAATTATGACTCCCCAGATCAACAAACCATCTAGGGCCCTTATTATGACCATAGTTTTTGTAACTCCTTTTTCTAACTTTTCTTTTCATCAGTCTCTACATAAAACCAGTAAACTTGAAAAAATCTTTGGTGAATTAGGTTGACGTAATACAAGATATTTCTTTTCCCTTTTCAAGAAAAATTTAATATCTCTTTTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1393046-1394017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1393046 24 100.0 38 ........................ ATGCCAGTATGGTATCTGCACTATACCCTTGTAAGTTG 1393108 24 100.0 38 ........................ GATCTACGGGATTGTCGACCTATACAACATGTTTGCCC 1393170 24 100.0 41 ........................ ATCGCTGATTTGATGAAAGAGATCTCTGATGAGATGATGTC 1393235 24 100.0 38 ........................ TCAGTACCGCCCGCTTTCCTCTGTTCTGTCACACCCAC 1393297 24 100.0 42 ........................ GCATACTACTATGGCCTAGCAAAAAGCCTATCTGCAAAATTT 1393363 24 100.0 39 ........................ TAGCACGATTACAAAGTTGAGTTTCTGCCACGCCCCCAA 1393426 24 100.0 38 ........................ GTACGATACCAAGCGCCTTACCTCTTTCCTCTAAATAT 1393488 24 100.0 39 ........................ CAACACAGCCACGACACGCCCGGTACTTACACACAAACC 1393551 24 100.0 39 ........................ ATCGTTATTAACGAGGCGAATGACGTGTTCAGGTATACC 1393614 24 100.0 41 ........................ GTTTTCCCCTGGGCTATCCATTCGGTGATCTCCCCGTTTAC 1393679 24 100.0 39 ........................ TCAACTTCTCCTACAATTCTATCTTAGCATTAAAGAATT 1393742 24 100.0 40 ........................ TTCCTCCAGCTGAAGAGTCCAGAAGACGTAACTGAAGGAG 1393806 24 100.0 42 ........................ AAAGATATAATTCTGCATAGATTTTCTGTGACAGAAAGAGGG 1393872 24 100.0 38 ........................ CATGTTTACGCCTTTAGAAGAAAGAGAATCAGTGGGCG 1393934 24 100.0 36 ........................ ACTGCTCCCCTGTTCTGTCCACAATCACGATACGCC 1393994 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 16 24 100.0 39 GATAATCTCTTATAGAATTGAAAG # Left flank : GCTTTATCGGAGGCATATAATAGTTCCACCCCCGAAGCTCCTCCTCAATAGGGTCTGAGGCCCTATATGAGTGGAGTCTTCGTAGCTGTCTAACTATCTGCGACCTCACAATATAATAGCAGTTGAAAAATCTAAAAACCGTTTTAAGGAGGGGGGTAAAAGAATTCCCGAATTTACTAGGGATTAACCTAGAATTAAGAAGATCATCTCTATATAAAGATTAATAATTAAACTAGGGAAAAAACTTACTTCATCGTTAAGAGAATAGTCTAGTAATTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGGGGTCGTTTGATGTTAGTTTCTTAGGAGGTAGGGCGTTATCCTCAAATCATTACCTCCATGAAGAATACCTTATCCTCCCGGGCTTAGTAGGGATTGAAAAAACTATAAAAAAATTGAAAACACAAACCAGAGAAAAGCTTATAAATAACTAAGGAGAAAATAAGAAATAGTAAGAGATTAATAAACCCTCA # Right flank : GGCCAACGTTTCTGCAATCTCTTCTCTACGTGCAGAAAAAAATGGAACAGCCACAGTATTTCCGGAAACTGCTACCGATCTGAGGAAGAAGAAAGTAGAGGTCGAGGAAACTAAGGCACATGCGCTAGTCCACGGCGCTCTGGGGAATTTGAAGGCAGGGACTACAATGACGTTGGAAAAGTTCGGACAGAGAGTCGACAACTGGTTGGCATCCCACGGCGTAAGTTTCAAACCATCTGAAACGACAAAACAGCTCATAAAGGAGGTAAGACTACAAAGAGCCAGAAGAAAAAGGGCGAAAAACGCATAAGAAGCTATTTATTTTTTATTCTCTATTTCCTATTTTATTATATGGAAGAAACAATAGTTATTCCGGATATATTAGATCTTATCGAAAAGGATAAACTACCAAGAGAACTCTACGCCCCGGACGGCTTTTTGGTTTACAAACCGTACGATCCAGCTATTGAAAGTCCCCTATTAGTCAACAGAAAGAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 1394919-1403850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1394919 24 100.0 39 ........................ ACATTGTACCAGTGAAGGAATATTTCGATGCTATTATGA 1394982 24 100.0 38 ........................ TCTTTCTATCGAAGTACTTTGCCAATGCTTCCTTGAGG 1395044 24 100.0 40 ........................ AGTTTATTTCTAGTAACTCACGCCACGTTCTTTCAATTGT 1395108 24 100.0 38 ........................ GATGTTGAAGCGGAAGATAGTATAATCACCACCTTGAC 1395170 24 100.0 39 ........................ TCGGGTCATCTGCATCCAATGTCACGTATAACAGCTGTG 1395233 24 100.0 41 ........................ TACAACGAGTTTCATCTTCTTTATTTCATGCCACCGTTTTG 1395298 24 100.0 37 ........................ AAATGGGATGATGAGGGTGTTCAACAGATACAACACC 1395359 24 100.0 40 ........................ CAGGATTACCTCTAGAATATAACGTACGTAGGGTGCATTT 1395423 24 100.0 40 ........................ TACAAATAACTAAGAACGCTGACGATTTCGTGAAGACCGC 1395487 24 100.0 39 ........................ CTTCATATGTTAAACCATAACAGATTGCACGTGCCACTA 1395550 24 100.0 42 ........................ AGGACAGCATCAAGGAGTTCTGGTTGTAATTGTTTCTCGTAT 1395616 24 100.0 41 ........................ ATCTCTCATTTCTTGGCTTACCCTCACACGAATTTGGGCTT 1395681 24 100.0 37 ........................ ACAGTAATGAGGTGTAACCCCTGAGACCTCAGGAGAA 1395742 24 100.0 40 ........................ TGGGAATACGTCTATGACTTACTAATGCCAGCGAAAGAGA 1395806 24 100.0 38 ........................ CCGTGCTTCACGCCCTGTTTCTCCAAAACAAGAAAGGA 1395868 24 100.0 39 ........................ ATGTACCCATATGGGTGAACTTGAAGAAAAAATGGTTAA 1395931 24 100.0 42 ........................ ATGCTGTACAGTTCTGCAGTTATCTTTTGGCTTAGAAATAGT 1395997 24 100.0 39 ........................ TTCAGAAGAGGAAGAGGAAGCAGACAGAGCGGTGGGGCT 1396060 24 100.0 38 ........................ TTCAGTTTGCTAACGCCTGGGCTATTGATCCTTTTGCC 1396122 24 100.0 41 ........................ TTATTTTCGCAATGATAGCTGGATCGATACCGTTCTTTGCC 1396187 24 100.0 41 ........................ GCCACATAGTATTGACTACGTGACGGGAATAATAACTGATA 1396252 24 100.0 39 ........................ CTTCTATGGCCATGATTCTTGCCATTGGACGAAGTCCTC 1396315 24 100.0 39 ........................ ATCATCGAGTACGGAAGATTCCTAGGGTGGAGATCATTA 1396378 24 100.0 39 ........................ TTCGTTGCGTTTACCATGTTCATGTAAATTAATACTTGG 1396441 24 100.0 37 ........................ TCTTCGTCATAGCCTGGTCTTCCTGCACGTCCGCAAA 1396502 24 100.0 41 ........................ ATTATCTTCACATTAAACCCCACTCCTAGAGTTGAATTTGA 1396567 24 100.0 39 ........................ GTATCAGCAGTGAACCATTCATACTGGATGTTGCGAATC 1396630 24 100.0 38 ........................ GATAATAATCAACGAGGCAAACTCCATGTTCTACAAAC 1396692 24 100.0 39 ........................ TTTCAAAGGGAAAATCTGAATAAATACGTCTGGAAATTG 1396755 24 100.0 39 ........................ AGTTGCTTTTTATAGTTTCTCTGACTGTGCACTGTCATG 1396818 24 100.0 42 ........................ AGCTCTTCTCATGAAAGTTTATAAATTTTGTAGTTACATACT 1396884 24 100.0 39 ........................ ACAAAATAATTTCTAGTCCAAGCTTTCACGGCTGCTTCT 1396947 24 100.0 38 ........................ TACTGCAATGCGCGTTTCAATGCTAACAATGCTCCGAT 1397009 24 100.0 38 ........................ CTTCAAGAATGAGCAAACCGCAAGCACTTAAAAAGATT 1397071 24 100.0 39 ........................ TAACTACTGCAGTAGTATTTTTTGCGTTAGCTACAATGT 1397134 24 100.0 41 ........................ TAATTTCTGCATAAATATCTTCCACAACACGTTTGCTTACG 1397199 24 100.0 40 ........................ TCTTCAAGGCTTAATTCGCCTTGTTGTGTCCCACCCTCTA 1397263 24 100.0 37 ........................ AAAGTACTTAGTCGTATAACAGTCTTCTTGGGCGAGG 1397324 24 100.0 38 ........................ ACTCAAAAAGAGTTTGAAAATTTTGTTGAATTTGTAAA 1397386 24 100.0 39 ........................ GTAACTGGGTCGTGGACTGTGTACAACGACGGCGATAAT 1397449 24 100.0 41 ........................ GAAACTCGTGCCAATTTGTTGAGTCAAAACTTAAATAGAAT 1397514 24 100.0 40 ........................ CATGGTGGGGGGGCGTCAAAAATTCAGAAATATTTTGCAT 1397578 24 100.0 38 ........................ AACTCCTTTGCAATCCTATATCTAGTGTAGCCGTCTAA 1397640 24 100.0 37 ........................ CTGCTCCATCAAACGGCCCCGTGAGGGATACTATGAA 1397701 24 100.0 40 ........................ AATTTGAACATAATTCGGCCTCGTCAGTTTTCCACAGATA 1397765 24 100.0 39 ........................ TCCCTAACTTAGGTTGGGGTAAAGAAATAGAACATAGAT 1397828 24 100.0 38 ........................ TTTACTGACAACGCCATCATACTTACTAGCCCAACTAA 1397890 24 100.0 40 ........................ GTCCATTCTCCATTTATCTCAACCTTATCACAAATTTGGA 1397954 24 100.0 41 ........................ TCAGTTCTAGAAAGAATTATTAGCATTAGATCTTCTAGACT 1398019 24 100.0 37 ........................ CTCTCTATCCCAGATGGAATTCCAAAGGATCAAGCAG 1398080 24 100.0 39 ........................ ATCTGAATTTCCTCAGCTTCCATTGCATAATTTATTCTA 1398143 24 100.0 40 ........................ TATTTACCTTAATATTATGTATAATAGATAAGAGCTCCCT 1398207 24 100.0 38 ........................ ACTATGGACCTACTACAGGGCCTATCTGACTTTCTGTC 1398269 24 100.0 38 ........................ TTATTGTCAGAAAAAGAAATTATACTCCGATTAATAGC 1398331 24 100.0 40 ........................ GTCAAAATTGCCCAACCGAACGTTAGCAAAAATGCAGCAC 1398395 24 100.0 41 ........................ TCCCTTTCAGATTTGCAATATGTTAGAGCGAGCTTCGCAAA 1398460 24 100.0 39 ........................ GCTGAATTGTAAAATTACGTTTATTACTTTCAGTCAACC 1398523 24 100.0 39 ........................ GTTTTATTTATAAACGGCGGGTCTAGATAAAATACAGTT 1398586 24 100.0 40 ........................ TCACTCTTTCAGTCATCATTCTCTTTGCTGAGATTGCTCT 1398650 24 100.0 35 ........................ GCGAAAACAATAGCAGGCGAAATAGAAGATAAAAT 1398709 24 100.0 39 ........................ GCAATAGACAATATAAGGAAGAGCTTACCACCTAGAGGC 1398772 24 100.0 36 ........................ CCTAGAGGCGTAGCGGGCTCACAAGAAAACATTAAT 1398832 24 100.0 38 ........................ AATGCCTGAAGCAATAACGCCCAAGTTACATGCTCTTG 1398894 24 100.0 38 ........................ ATCCCGCTACGGCAATCCCTACGAATAGATCGGCATTA 1398956 24 100.0 38 ........................ GTGTATAAGCACATTAGTAGGATTAGGCACGGTACAAG 1399018 24 100.0 41 ........................ AATCACGAAAGCGATACTAAGGGCAATACAATACAAACATG 1399083 24 100.0 39 ........................ CTTATTTTGGTGTCAATAATCTGTATGTTGCCGTATTGC 1399146 24 100.0 40 ........................ AGATTGTTTTATTAATACCAAGTAGACAATTATATATTTT 1399210 24 100.0 39 ........................ CCAAAACATGTCACATGTGCCGATATTGATATTTACAAA 1399273 24 100.0 38 ........................ AAATCTACCGATCAACGGACGAGGGGGAACGCTAAGAA 1399335 24 100.0 44 ........................ GGGAGTTCCCATTCGATTTTGGGAACCCTCAAGCACAGTCTGTG 1399403 24 100.0 41 ........................ TTGTGCGCCTAGAGTTGCTACGCCTTGTTTCCACACCTCAT 1399468 24 100.0 38 ........................ CTAACTTGTTAAAGTTCTGTTGTAGCTCGTTAAGTTGT 1399530 24 100.0 36 ........................ GTTCCAGCTAAGATGTTCTTTCCTGCAGTCTTTGTT 1399590 24 100.0 39 ........................ AACTAAGCCTTCACTAGGTGAGATAAAGAGCATAGCTAT 1399653 24 100.0 38 ........................ ATCCGTTCTCCGTCCCGATCCGTACCGTTCTCTGTACT 1399715 24 100.0 37 ........................ AGCATAACTTCATCTTCTTCTACAACTTCGACAGCTT 1399776 24 100.0 42 ........................ TTAATTTATTGTCATCAAATCTATTTAGATACGCTAGTATTA 1399842 24 100.0 39 ........................ ATATTTCTTCGAATGGGTTTTCTGTATCACCTTCTTCAT 1399905 24 100.0 40 ........................ CATTTGTTATCAACTGTCCGGGTCCAGCGCTAGATGCGGT 1399969 24 100.0 37 ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATA 1400030 24 100.0 38 ........................ ACGTAGCCTAGACTTGCTATAACTCCGTTGTATTGCCC 1400092 24 100.0 39 ........................ ATACCAACAGCAACAACAAACTTATTCTTCGCTCATACA 1400155 24 100.0 40 ........................ ACGAACACACCCCTTAAAACTCTTTTTCCAACATTCACCT 1400219 24 100.0 40 ........................ CAAAGTCAGAGCTGGACTATCGTAGACATCTATAATAGAG 1400283 24 100.0 39 ........................ TCTTAGCGAACTTGCAAAATATTCCGACCAAAGCTAATA 1400346 24 100.0 40 ........................ TCAGGTGAGGAAGATGGTCTCCAAAACTACTGTTATTGGT 1400410 24 100.0 43 ........................ GAGAGCTACAAACACGCTACCTAATAAAATTTCCAGATTGTAG 1400477 24 100.0 37 ........................ ATACAGATTTCGTTATCCATATCCTACATGACTTTCC 1400538 24 100.0 39 ........................ ATACATCGATCTTGTAATTAGATATCCATTGACTGTTAT 1400601 24 100.0 40 ........................ ATGGAATAGGCTCTCAACAGCAGTATAATTGGCAAGTATT 1400665 24 100.0 40 ........................ TCTACTCTTATAATTCCGTTACTTATCTTAACAGAGAACG 1400729 24 100.0 38 ........................ CGTTTCTATTGCAAGGTCTGAGATTTTTGGCCTGAGTA 1400791 24 100.0 40 ........................ GTATTGAAACGCTTAAGGTCAGCTCTAATTCTGTACGGAT 1400855 24 100.0 44 ........................ ATGTTACTAAGTAAGTTTAATAATATATTATAAAATGCCATATA 1400923 24 100.0 38 ........................ CTAAGCAGTGACTCACAGTTTAGACATTCACAAGTATC 1400985 24 100.0 41 ........................ TTCTAAGCGTGTAAAGATCTATCTGACAACACGAAACTATG 1401050 24 100.0 40 ........................ TTGAATATTGTACAAAGGAACGTTTAACCCTATAATAGAC 1401114 24 100.0 37 ........................ CAATCCCATTCGTTTTACTCACTTCTAAGAACCTCGC 1401175 24 100.0 40 ........................ AGTCTCTGCATCATGATCCCTGCCCCAGCTAAGACGTTCT 1401239 24 100.0 40 ........................ ACGATTTTCGGTGTGAATAATGTAAATTTGCAAGTATCTG 1401303 24 100.0 39 ........................ GTCTTTATGGCCCTCTGGGTCTTTCCACCATTGAGAGGA 1401366 24 100.0 40 ........................ TTATCCTCATTCTATCGGTGAGTGGAACAAATTGGGTAGC 1401430 24 100.0 40 ........................ ATCGTTATGCTGTAAACTTCCCCGGTTCTCAATCCCGTTT 1401494 24 100.0 40 ........................ AGTTAACAATACTTTATTGTCAAAGAAGCAAGGATATGCG 1401558 24 100.0 41 ........................ TTCAAACTAGATCTAGAAGATTTCTATCGGCATCTTTACAT 1401623 24 100.0 40 ........................ ACGATATGAAAGTTGCCAGAGCCTTAAACAGAATTGGTTC 1401687 24 100.0 39 ........................ GCTTCTTGTCCCTGAACTCCTTCTTGAAATGGATTTATT 1401750 24 100.0 37 ........................ TTTCGTATAAGGACCAGAACGGCAATACCCAAACTGT 1401811 24 100.0 37 ........................ CTACTACATCATCCTCTACCACGCCAAGCCAACAACC 1401872 24 100.0 38 ........................ ATCTAGCGTTGTCTCTGCCGTTATATATTTGAAAGTGT 1401934 24 100.0 41 ........................ ATCGCTGATCCAGAACCACGTGGCGAATACAGGAAGAACTA 1401999 24 100.0 39 ........................ ATCAAAAGTCCGCTATGGTCTAACGGTGTAAATAATTCT 1402062 24 100.0 37 ........................ AATTGGATCCCTACGGTTGACGGATCACCGAAAGTGT 1402123 24 100.0 39 ........................ ATCATATTTTGAATTCTCTTATACAGAAATCTTTGATAT 1402186 24 100.0 41 ........................ ATAGCTATATATGGAAATGTTCCAGACGCGGAATATGTTGC 1402251 24 100.0 39 ........................ AAGCCTACACAGGATAGGATACTCAAATTATATGAAAAT 1402314 24 100.0 42 ........................ TTTGCGCATTTACTTTTGTATGAGCTAGGCTATTTACATCAT 1402380 24 100.0 37 ........................ CTGAAATATCCTTCAAATTGATTTGCCAATAAATTAA 1402441 24 100.0 37 ........................ TGTTCTGTCGTTACTGTCGTAAAGCACGTCCTATTAT 1402502 24 100.0 38 ........................ ACAGTGCAGAAGTCTAATCCAAATTATTCTACTTTAGC 1402564 24 100.0 39 ........................ TCCTTGGAGATGTTGATGTTTTATACGGTATTATGTGAA 1402627 24 100.0 38 ........................ GCACAATTCGCCAACGATTTCGGTTCGCTTTATACCTT 1402689 24 100.0 41 ........................ CAAATTTCGGCGAAAATTGTACCGAATTTCGGCATTGCTGG 1402754 24 100.0 40 ........................ AAGATCATGGTATTGATATTCAAAAACATTATTCAGAGTG 1402818 24 100.0 42 ........................ ATTAGAAAAGTTTAAGATTACGCATGCAAATATGTTTTTGAT 1402884 24 100.0 39 ........................ TTCTGTTTCGAAGAAAACCCGCCTCAGATTCATTATGGG 1402947 24 100.0 39 ........................ AAATCAAACGGAAACTCCCCGGATATTATCATGTCTAAA 1403010 24 100.0 37 ........................ CCTCATCGTAAACATGCAATCTTGCATATTCAGTGTA 1403071 24 100.0 39 ........................ GCGATATATGTTATAAGAGGAGAAGGGACTTTACCCCCT 1403134 24 100.0 41 ........................ ATATACATCGCCGGTTTTATAGCAACTGCACAGCAACAAAT 1403199 24 100.0 38 ........................ GAAGTTGCAAAAATTGCCAATGTTTTTTTCAAACGCGT 1403261 24 100.0 39 ........................ ATTTATGATGAAAATAGGAAATTTTTCAGAAGAATTATA 1403324 24 100.0 37 ........................ AAAAGTTTAAATACCCGAAGCCACAAAGGTAAAAATA 1403385 24 100.0 40 ........................ CGTTCTAGAGCTAAACGATGCATACGCGGTGGTACAACTA 1403449 24 100.0 41 ........................ ATTCGGGGAAAACTTATGCATTATAAGAAGAAGAGATATTT 1403514 24 100.0 40 ........................ TCAAATAAGGAACAACTCTGGGTAAGCCCACAATACGCAA 1403578 24 100.0 38 ........................ CTTAGCGTCTCAACCTGAACCAAACTTCCTAGATCAAC 1403640 24 100.0 38 ........................ TAAACTAGATCCTTATATTTCACGTAAATGTAAAGGGG 1403702 24 100.0 38 ........................ TAAGGAGTAAGCTAGCACTAGCAATAGCGGTTGCAATA 1403764 24 100.0 39 ........................ GTTCATCAGTTCTACCTTTTGGTCCAAAGGCTGATCCAA 1403827 24 95.8 0 ..G..................... | ========== ====== ====== ====== ======================== ============================================ ================== 142 24 100.0 39 GATAATCTCTTATAGAATTGAAAG # Left flank : AAACTACCAAGAGAACTCTACGCCCCGGACGGCTTTTTGGTTTACAAACCGTACGATCCAGCTATTGAAAGTCCCCTATTAGTCAACAGAAAGAAATGGAAGCTGTTCGCCAACTATACGCCAATAGAAGGCAGACCAGAAGAGGACACATGGATTGTAAAGTTGAATACTACCGAACAGTATGTGGAAATACACGATCCAGAGCTAGTTTGGCTACTTTATTACATTAGGGTGGTACACCCAGGAGCGACACCAGAAGAAGCAGTCAACCACGAACTAGCTGAAGTTGAAAAGGATGGTGGGAAGTTCAAAAATGACGACGAGTTGATTGGCTATGCGATGTACTTGTATACAGCCTTAGCAATCGCCATTGCCTACGGACTCCTTGTCGTAGTCGAATGATTTTTTCTGATTAACCGGGGAGTTAATTCTTTTTTTAACGAATAACGTATGTTCTACCCTTATAATGCCTTAGGAGCGCTGCATACAGATTCCTGTCG # Right flank : GATCTTGATGATATTCAATGAAGTCCATTAGTACTTCCCCCCAAGGAGGTTGGAGAGAGGGAGAAAAAGAGTCGTTTGAGAGGTTGATAAATAGGATTATGAGGTTGGGAAGGGTTAGAGGGATGAGAGTGATTTTTGCAACGTATAAACCCCAAGATTTAAATGATTTAATGTTAACGTTAACTAACTTAAAGATTGCATTGAGGGTTAAAGAAGACGCTTTAGATAGGATTAACATGAAGGAATAAGCTAAGTTGTTGCAAGCTTCACCACCAGGGTATGGAGCGTTGAGGACTTTCTCGTTAAAGGTGAGAGATCTGATATTCAGAAATGAGAAGTATCAAGATTCATGAAGATTAGATAGATCTTAGTAGTGTTTAGAAGGTAGTATTATTTCTAGTTAAAGTGCCAAGCACTGCCTTAGGTGTAAAATCCCTTCCATCATAGGTCCACACGCTATTTAAACTGTAAGCGTATTCTAAAAACCTCCTTAACAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 6 1817464-1817874 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1817464 24 100.0 39 ........................ ATACTGCAAGCGAATTGGCGGAAAATTGGCAGCGACGTG 1817527 24 100.0 42 ........................ TTATCTAATTTTAATAATCAAGGAAATTCATTAACTCAAATA 1817593 24 100.0 39 ........................ CCCATTCATCTCTTTCTTTGCAGCTTTGTTCTAACATTA 1817656 24 100.0 41 ........................ TGGTAAATAGCTCTGTTAGGCCCAGTTATTCCATATTCTGA 1817721 24 100.0 44 ........................ ATTTTCTAATATATCTAATTCACTCTGCGTATCATTATGGATAA 1817789 24 100.0 38 ........................ TTAGCCCAACAATTAACTAAAGATCCTGAAGCAGTCAA 1817851 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 7 24 100.0 41 GATAATCTACTATAGAATTGAAAG # Left flank : TCCATCATATGTATACATATTTAATAAAAAATTAAAGAAAAATTATAATATTCCACACTTTTTATAATGAATTCCACGTTAGACTGAAAATTGCTATAATTTATTAAGATTAAATTAATAAAATTATTATTTATATTGAAAATTCATATAAGATATTTTATATTTACTAAAAGATTTTTATCATTTGTATTTTCTTATGCTAAAACTATCCCTTTAAAATCCAGTAAAAATACGATTATTAAGAATAGACGAAAATCTTGTAAATGATTACATTTCTCTTAAAGAAAATATAGGGAAAGAGTTCCCCCGTATACAATCGTTGTTTTCCTTATTCGCTAATTCGTTTTGGGCTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCGTTAAAATCCCGGGAAAACCCGGGAATAGTAAAAAAGAGAACAAAAATAATAATAATACTAATGAAAGAAGGGAGAAGAAAAGATAAAATAGAGGGTTTAAAATCCTAA # Right flank : GAAATTTATCAAGTCGAAGATTGCACTAGAGTCAAAAGGTATCATTTCTTTCTTTCCTTCATTTCTTTAACTCTCCGACTACTTCATCAGTATTGATTTTTACTATCTCTTTAGATGCTAAATCCAATAATCTTCTTGCTTGCTCTTCTTCCTTCTTTCTAACTTCTTCTTCCAAATCCTTTCTTAAAACCTCACTTACATTAATCTTATATTCTTTTGCTTTTTCTAACATTTCTCTCCTAACCTTTGTCGAGGCAGCAACCCGTTCGCCTATAATGACCTTCTTGAATTATAAGGTAATAAATATTCTGTAGTAGAATGTTTTCTACCTTATGCTTTCTAGGCTTAAAATTTAAATTCTTTAGGATGATAGATATTAATTGTGGAATGATTTCGAGGCTTAGACTAACCATAAAAGAAACCTCATAATCTTTGTACATAACGTTTGTTAAACTGTATTTAGCCTTTACATTTCTAGGTTTTTCTGCATGAGTATCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 7 1889016-1883229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT549890.1 Saccharolobus solfataricus strain P1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================================================================================== ================== 1889015 24 100.0 43 ........................ AATAAACCCATTCTTCTTCGCCCGTTAGTATTCTAACACTGCC 1888948 24 100.0 41 ........................ ACAGGGATGCGGGTTTAACGCCCCCAGAATGGATTGACCTT 1888883 24 100.0 39 ........................ ATTCTAATAAATCAATTAAAGTTAAGACAAAAAACGTGG 1888820 24 100.0 39 ........................ ATTCATATTGGAAATGGAGTTGAAATGTGCATAAATGAT 1888757 24 100.0 41 ........................ GTACCATCTATAATCTCAATTTACCGCAGAAATAAGATTAC 1888692 24 100.0 43 ........................ ATTTCGAAAAATGCAAAAATAAAAAAATTATTGACAAAAATAG 1888625 24 100.0 43 ........................ CTACACCGATTCCGATACCCATTATAACGCCGATAACTAACAT 1888558 24 100.0 40 ........................ TCCTTTCGTTGTCTGCTTTTCTGTTACTATACACCAATCT 1888494 24 100.0 40 ........................ ACGGAGCAAGCGTCACCGAGACACCTCGGTTAAAGCGAGG 1888430 24 100.0 44 ........................ ATATAAACTATATAATTACTAAGATTTTGTAAAATTATTCTTAC 1888362 24 100.0 37 ........................ CAAAGGTGAGCTGAATGGCTAAGAAGACAGAAGTAGA 1888301 24 100.0 41 ........................ GGACGGCCTCTTAGAAATACTACTGCTTCACCGACAGACAA 1888236 24 100.0 41 ........................ CCAAATAATAATTGGAGCGGTGCAAAAAATTCAAAATTCCA 1888171 24 100.0 39 ........................ AAATACTGAACGGTGGAATAAGTGTCACTGACCCCCATA 1888108 24 100.0 44 ........................ TATGGCAAATAGGACAGATCTTAGTATGCTCAGCGTAACGGATG 1888040 24 100.0 39 ........................ TGTACTCCACCATCTTCTGCAGCTTCCTGAAGGGTAAGG 1887977 24 100.0 43 ........................ ACAGTATTGGACGCCGTAACGAATATTATCACCGGTTCACCAA 1887910 24 100.0 39 ........................ TATTCATAATTTATTATATTTATTCGTTTCGTTATTTGT 1887847 24 100.0 40 ........................ CTTTTCGTTAGCGTGGGGATTCGAAATGTTTATTAACTCT 1887783 24 100.0 39 ........................ CTTCAAACGCTACCTCGACAGTCCTACAGCCTACAGCAC 1887720 24 100.0 45 ........................ TAAATTTAACTTCATATATTCAAGGTTTTACGATTTTGGAGGGCT 1887651 24 100.0 42 ........................ AATTTCATTGTACTATCACCTCATCCTTATTTATCATTATTT 1887585 24 100.0 41 ........................ TGATTGAATGATGTTAGGAGTAAAAATAGATGTTCCGTTCA 1887520 24 100.0 40 ........................ AGTTTTTCATCTAAAAGTTTTAGTCCATTTTCAACATCAT 1887456 24 100.0 44 ........................ AAAACTTGGACAAGTTTCTCACACTGTTCATCACTGATTATTCT 1887388 24 100.0 42 ........................ ACTTCACTTACTGCATACTCATGTTCAGTGTTATAATCGTCA 1887322 24 100.0 39 ........................ GCAATTCCGTTAGGAGTTATAATTTTACTTGTTAGTTTA 1887259 24 100.0 42 ........................ ATTATGATATTTAAAATTCTTTCTGTGTCACGGGGATTATAA 1887193 24 100.0 40 ........................ TATTAAAAGAATGATGAATAAGTTATAATTCTTTTTTTAT 1887129 24 100.0 40 ........................ TAGGTTTTGTGAAAGTGACAAATGCCCATGGAAGGGACAA 1887065 24 100.0 39 ........................ TTTTCCTCCATCTTTATCATTCTTCCTCGCCCTCCTGCA 1887002 24 100.0 37 ........................ ACAACGCGATGTAGAGCGTTAGGAAAGCAACAGTGTA 1886941 24 100.0 43 ........................ ATGAACTGTTTTGCAATGAACGTGTATGAGAGTTTGTACAAGA 1886874 24 100.0 44 ........................ ATTGGTACATTCTCTATATATAACATATGATCTATTGTATACAT 1886806 24 100.0 40 ........................ AATTGGCGAAATTGTTGTATTCTGAAAAGTCATAGTTAAA 1886742 24 100.0 43 ........................ GCAATGATATCCCCGACCCACCTGTTGCAATTGCTGGATATCC 1886675 24 100.0 40 ........................ GTCTTGCGCTAGGTGATGGTACTATATGTATATCATTTTG 1886611 24 100.0 46 ........................ CATCGACACTGTCAGTAACACCTGACCAAGGCTACCAGTTACAGTT 1886541 24 100.0 42 ........................ TGTGTAGAATCATAGTTATAATATAGTGCTAATTTATCGTTT 1886475 24 100.0 41 ........................ TGAATTGTTGGAGGTGATAAATACAAACCTAGTTTATTTAT 1886410 24 100.0 37 ........................ TCAGAAGTCAGAGACACATCTCAAAGAGGCTCATAAG 1886349 24 100.0 38 ........................ ATGCAAAAATTTAAGCTTTTTGCCAACTTTTAACCGTA 1886287 24 100.0 41 ........................ ATAACCGTGATCAAATACAGTGCAACACATAGCATCGTCGT 1886222 24 100.0 38 ........................ GTTGGTAAAGGAAGTTTTGTGTCGAAAAGCCAGATACT 1886160 24 100.0 43 ........................ TCACGATAATGTTACATTCGTGATCGTACGTATAGCCCCTCCT 1886093 24 100.0 41 ........................ TACTGCTATTATGATAACAAAGTTTTACCTAGTCTTTACAA 1886028 24 100.0 39 ........................ ATTATTACACCGACTATAAGCAAAGCTATTGCTATTGTT 1885965 24 100.0 38 ........................ AACGTATTAGAACAACTGGTTCTATATCACGTGTTCAA 1885903 24 100.0 42 ........................ ATTCTATTCCATAATCAACATACTTATTACATGTGTAGTAAA 1885837 24 100.0 40 ........................ TAATCTCATCCAATTATATGCGGTTTGCCATTGATAATTA 1885773 24 100.0 39 ........................ CTTTAGACACGGGATTAATCCCTACACGACGAACCTCAT 1885710 24 100.0 40 ........................ TTTTCTGCGGGATCTGTAAACCTTAAAAAGTCGGGGTCTT 1885646 24 100.0 40 ........................ TTTAATTGGTGGTCTAAAATGTTAACTTTTTCTGTTTCAT 1885582 24 100.0 39 ........................ ATTAGAACCTTCCAAATGTCCTTTACTAAGTCTGGGAAA 1885519 24 100.0 40 ........................ AGCTCTCCAACTAACTTACCCTCCAGCACCGGCGTAACAG 1885455 24 100.0 41 ........................ GAGAGAAAGGAACGAAGTGATGATATCTAATTAAATCTCCA 1885390 24 100.0 42 ........................ TACCTTCTTCAATGCCTTCCAATGCCTCTTTCCTCATTCTTT 1885324 24 100.0 40 ........................ CTAACTCTCTTCTGAATTCTTCATTTGTTTCGCATGCTAA 1885260 24 100.0 39 ........................ TTATTTCTTGCAAAGTTCTTGAAATCATAAAGTGTTAGA 1885197 24 100.0 41 ........................ ATATACATATCTTCACTCTCCTTTATAAACTTTTCTCTATC 1885132 24 100.0 42 ........................ TTAAAATTTCAATTTTTTTACTTTCTTCAATTTGTTTTCCAG 1885066 24 100.0 40 ........................ ATGACGTCCAACATATCGTTGCCGTTCATCGCCCCACCAA 1885002 24 100.0 38 ........................ GCTTTATCATTTTATCAATTCACTCCATTTAAAAATCC 1884940 24 100.0 40 ........................ ATAAGAATTCCAGTTTCTGGAACTGGAAAACAACCGCTTT 1884876 24 100.0 43 ........................ AGAATACTTGTTACCTAACTGGTTGAGCAAAAACTTTAAATAT 1884809 24 100.0 106 ........................ CCCGCACTTCTATAGAGTTGTAGCTTTTTTACCCCATGTTTATATTCTCAAACAGCTGTTTAAAACCCGCACTTCTATAGAGTTGTAGCAAGGGGCTTACTAACAG 1884679 24 100.0 40 ........................ GACCAGAAGGAGGGTTCTATAAGTACCCGAGGATATTAGG 1884615 24 100.0 38 ........................ TTCCAGGTTCAGATATTACAAATGAAAAAGGACGTGTT 1884553 24 100.0 41 ........................ TATTTGGAGATGCAACACTTTCAGATAGTAGTACTGTGCCG 1884488 24 100.0 44 ........................ GTTACACCTAATAGCACATATAGCGTTGGGAAGAAGCTGAAGAA 1884420 24 100.0 39 ........................ CTGCTTTTTAGACTTCTTTTTGTCTCCATTAGCCTTTCC 1884357 24 100.0 48 ........................ ATGTATCCATATTCAATAATGCATTAACTCCAAGTGTTGTGGTATCTT 1884285 24 100.0 41 ........................ CGTCCCGTTGTACATGCCGAGGAGGGCGTAAGAGCCGTTGG 1884220 24 100.0 43 ........................ AGAAAATAAGATAATCTTTTTCAAACCTAAACAAAACACCCAA 1884153 24 100.0 39 ........................ CGTGCTTAATTTCAAATAGAAAAAATAAAAAAACTCTGA 1884090 24 100.0 46 ........................ TATTTGACATTATAACCCAACCTGGTGAAATCCTCCAATAGCATCT 1884020 24 100.0 41 ........................ ATAAAATCGGCGTTTCAACATATTGTCCTTGAATATAATCA 1883955 24 100.0 37 ........................ CCTTAAAAAGTTACCTGAACCATTATTCTGCGTGATG 1883894 24 100.0 39 ........................ TTTTTTCAACTCATTTTCACGGTCGTAGTACGCATCACT 1883831 24 100.0 41 ........................ AATTCTGCGAAATAAATAAATCGTGTAAATACGCAAAAATA 1883766 24 100.0 40 ........................ TATCAACAAAATTATAGTTACAGTTCTGGAAAAAGAACAT 1883702 24 100.0 40 ........................ AATAAATGGAAGCATAATAGTGGTACATAATGGTGGGGAA 1883638 24 100.0 41 ........................ ATGAGGAGAACCCTCGCTGGCAGGGGAGAAGTCAGTACGGC 1883573 24 100.0 40 ........................ TTCATTCTCAAAATAATTTCCGAAAACAATTAGGAATAAC 1883509 24 100.0 41 ........................ AGTGAAATTCAACTAACTGCACAAACTCCAACACTTTTAAG 1883444 24 100.0 40 ........................ GTATGTAATGAACTTTATGAAGAAAATGCTAGATTATTTG 1883380 24 100.0 40 ........................ TTAAGCCGACGCTCCATTGATATCCATAGTCATACATTGT 1883316 24 100.0 40 ........................ GAGGCAATAGTGAATGGTGTAGTTATATGAGCAATGTGTT 1883252 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================================================================================== ================== 89 24 100.0 42 GCTAATCTACTATAGAATTGAAAG # Left flank : GAGCGGTTCTGTGCTTGGTTAAGTTCCCTATACTCTCAACACCATTCAGCGACTCCAGATTTACTAAAAATCTACCTGAACCGCCTATCATTTCTTTTCACCACCTTGTTCACTCTTACTAACTAACTTAGTCCTATTTGCTATACTCATGGCTAACGCACCAGCCTTCCTAGCATAATACACATCTTCCTCAATCATCCTAAGAAAATATTCTATATCTTGGTTAGTCGGTAGATAACCCACTACCGTGTACTTCCCCTCACTTGAAGACACGTTAACAGCGGGATATTCCTTTCCTTGAATCATAGTTGTCGTGCTCACTATCTCACCCCTATCAATACCCATCTGTACAATCCTTTGAACATCATATAGAACCTTAGTCACAGCCTCTTTGGATAAGGCATTAGCAAACCTATCCACTAGTGTTGGAGACTCGCTATAGAGGAAGCCCACAGCCAACAAGTTGGCTACCCTCACTATGATACCCTCCTTCTCTTCTT # Right flank : TAGAAGATGACTTCCTCCCCGCCCTAAACGGTAGACCCAAAATCACCTCCTTAAAAATAAATCTATAGTGTAAATAAGTGTATCTACTAGATTAAATGTAAAATTCTCTGGATTGAATAAATCAGGAAATAAAAGAATTAATAATAATCTAAACTCCTCTCTCCCCACCTCCCCCTTGAATATGGTATATAGAGTACAAGGGCCAGCACGAAGATCAACGTGCGGAAAACAAACTTAGTAGAACCAGTAAATGGAAGAAAAGCCTTAATGTTCCTATAAGAGGTCTCTATGGGACCTCTTACCTTATTGTATAAATCCAACACTTCCCTCTTGGATAGGTCTAGGTTAGTAGCCCTAGCAAAATAAACAAGACTCTTTCTCCTCACTTTTCCCTTGCTGTACACGAGAAGCCTGAACTTGACCTGCTCATCCCTCCTATGCCTCTTACTATTAGTCTTGTAATCCCCGTCAAACTCCTCATACACCTTAACATCCCCAAC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //