Array 1 126-2288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUY010000035.1 Corynebacterium diphtheriae bv. mitis strain 08-18 NODE_35_length_5700_cov_21.154854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 126 28 100.0 33 ............................ CTTTCCTTTCTACTTGACGGATCTGTGTAAGAG 187 28 100.0 33 ............................ CAGCGCGGTGCAGACGGACTAGCGTGGGTACGC 248 28 100.0 33 ............................ CAACATACCTTTACGACCATGGGAAAGTAGTGC 309 28 100.0 33 ............................ TATTTTTCGACTTGTCAAGTTGCTAGGCTACCG 370 28 100.0 33 ............................ GCTTGTAGGCGGGTGACGTCACCGCGAAACGCG 431 28 100.0 33 ............................ TACGAGCGCGCATACATTTCTGCTAATTATGCC 492 28 100.0 33 ............................ GTGTTCCTTTGGCTTGTGGGGTTGCGGCCCCTC 553 28 100.0 33 ............................ GAAACAACCATTCCCCACTCGGCGGATGAAGGG 614 28 100.0 33 ............................ GCCGCGTCAGCCCATACGAGCTGCTCAGCGAAG 675 28 100.0 33 ............................ CTGATTACCCTTGGCGCTGATCTCGCTTCAATG 736 28 100.0 33 ............................ TAGGCTGTTATCGAAATTGTCAACAATGGATCG 797 28 100.0 33 ............................ TGCCATGATCGTCTTTTTTGATACCCCGACAGC 858 28 100.0 33 ............................ TAGTCGATGCGGCAAAAGAAAAAACATCTTCCG 919 28 100.0 33 ............................ CGAGAAATGACTAATCGGATAACACCAGTCAAG 980 28 100.0 33 ............................ TATATCTGGCACGGCCGAATCCTACAGGCATAC 1041 28 100.0 33 ............................ GCAACATTATGAAGGGGCTTAAAGATGGTCTTG 1102 28 100.0 33 ............................ AATTGATCGCAAAAAACGCTGAGTGGAACAAAC 1163 28 100.0 33 ............................ TGAAAACGTGACTCTCCATAAGCGGTCCCCGTC 1224 28 100.0 33 ............................ GATATAGTCGGTGCCGTTAATCGTGGTGCCGAG 1285 28 100.0 33 ............................ CAGCGAGCTTTTTCTCAGCAATGCCCTTGAGAC 1346 28 100.0 33 ............................ GCCGCATTGAGAGCTAGGATGCCGCTAGGTGCG 1407 28 100.0 33 ............................ TTCGGTTTCTTCCTCAGCTTCTTCCGCCATTGA 1468 28 100.0 34 ............................ GCGACTACGACACCGATACCCTCGTAGGCGCTCC 1530 28 100.0 33 ............................ GATCATATAAGCGGAGAACTAGCTATTTTCGTG 1591 28 100.0 32 ............................ ATGCCGACTCCTGGTGGGGGGTAAAAGTGGGG 1651 28 100.0 33 ............................ TACCGGTGTGTACTCATCTTCGGCAGCGGTCAC 1712 28 100.0 33 ............................ TAGATCATATGTATCACCATCATCAAGCAAGGC 1773 28 100.0 33 ............................ GCATCCCTCCTATTTTTGGTGATAGTGGGATGG 1834 28 100.0 33 ............................ GACGCGCTCACCAGCGTATCGGCAGAAACCTCG 1895 28 100.0 33 ............................ GTTCAGGAGTTTTATCGGTGACATCTTCGATTC 1956 28 100.0 33 ............................ GTTGGGTGTGGGATCGTCCTCGGGTTCGAGCTC 2017 28 100.0 33 ............................ AGCTAGTTCTCCGCTTATATGTTCTGACCGCAG 2078 28 100.0 33 ............................ CACAAGCGGCTGTGGGTGCTGCTCGTGAGAAAG 2139 28 100.0 33 ............................ TTTTCGATGATCGCCGCGATGTCACATTGTGTG 2200 28 100.0 33 ............................ GACCCAGCAGTCGGCGGTGGGTGTGCCTAGTTG 2261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 36 28 100.0 33 GGCTCATCCCCGCTAGTGCGGGGAAAAC # Left flank : CGAAGCCAGCGACTAGTTCCACTGCCACAAGGCAGAAGGAACGCAGATAAACATAGCCTGCCCCAGCATGGGGCTAGGAGTACGAATCCTGGGCTCCTTTAAGCGGAACTGCCAACAACGTAATGG # Right flank : CTTATCAAGCTGCACGTTTAGAGCCAGTTAGAGCTTATTACATATAACTTTGTTTCAGCAATTTTTCTGCTTCATCTTTATTTCTACTGTTTTAGGATCAGCCATTCACCCAAATTTGCTTAGTCCTTTCTTCTAGCCATAGGCTGGCATTGTTCCCTGCGATCAGGGATGAGCCTTTTTAATATCTCTACAAGATTTACATAGGCATACTTCCCCGCACCAGCGGGGTTTCCTTTTACGCGTCTTCCTTTGGGCAGACCTCCACCTCTAATCCACGTTCATTGGTATAACGCACTAGGAATCGACCTACACGAGCCTCTCCTCTTTCGTCGAAAAGCAACGCAACTTGGCCTTTAAGCAAACCGGATCGTTGCCATTCTGGTGGTGTTTGTGCTTCGAGCGAATCAATAACGGCATTAAAATCCGGCTCGCTACGTGTCATTCGGGCCGGCAGGCGCACTGTGTTTCCAGCCAATGCCTCAGCTTCTTTCCAAGTAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCCGCTAGTGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 427-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUY010000021.1 Corynebacterium diphtheriae bv. mitis strain 08-18 NODE_21_length_37468_cov_24.307758, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426 29 100.0 32 ............................. AGACGGTCTAGCGTGGATACGCTTCCGCAAGA 365 29 100.0 32 ............................. TCCATAGTATTTCAAACCTTCCTAGACCGTTT 304 29 100.0 32 ............................. ATATTCGTTATTATCAAAGTAACACTGCACTG 243 28 93.1 32 A......................-..... CCGGACGCTGGTGGGACGGCGACAAGGGCGGG 183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GGGCTCATCCCCGCTAGTGCGGGGAAAAC # Left flank : CTGATCTTTCCCTTTTCGAGCAAGACGACGTCTCATCTTGTTGAACCATTCAAGAAAATCAAAAGGTTCCGCGTCCATGTCGATATCCATGGAATGGGCACGCCAGAAAATAGCCAGCAAAAGCCGCATCACAGCATAGTCTTGAGCCGGGGACTCCCCCTGAATATAGGCAACCTGCACCTCCCCCGCGAAAATATCTCGTATTCCAACTGAAATCTGGTTACCTTGAGTATCAAGAGCCAGAATCCAGCGGATCTCCAGTAACGAAGCCACCACCAACTCCTTCCTGATTGTTTTAAAACTCCCAACTTAGGAAGCACTTTCTCCACAGAATACACTGTATAGATATTAAAAGTTAGTTTTTTCAAAATTTTTTAGTAGAGCCATCATTTACTGATTTCTCTGAATGAAAAACACAGATCCCAAAACCCGTTCTTCAACAAAGATTCATCCACCCTGCTAGTGCAAGGAATCACGGCGGTCCAGTTCTCAAAGTCCCT # Right flank : CGCTAGAAGTGGGCTAGGCTACAGAATTAGGGGGGTGTTCCTATATAGGTTGTCAACCTCGCGGGTGGAGAAATCGGGGGCGGATTCTCTCTGTGGGGTTGTGTGGACGGGTTTGTTTTCGGGCATGACAGCTAGCCGACTGGGATTTTACCCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCATCCCCGCTAGTGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //