Array 1 18779-16676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZX010000001.1 Pectobacterium versatile strain IPO:0139 NAK:93 PCC:139 GJPAHMEL_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18778 29 100.0 32 ............................. CCAGTTGCTATCAGGAGACTGAAAGCTCGGCA 18717 29 100.0 32 ............................. ATGATTATTTGCTACATCAGAGATGCGAGGTG 18656 29 100.0 32 ............................. ATGGCCTACGGCCTGTTGCGCCTGCGCAACGA 18595 29 100.0 32 ............................. TAATGCCAGCCGTTCAGCGTGGCAAGACTATT 18534 29 100.0 32 ............................. CCGTCATAAATTTCATTCAGGTGTCCGCGTAA 18473 29 100.0 32 ............................. TCATGCCAAGTGCCCATACCGACAATCCCGTC 18412 29 100.0 32 ............................. GCGCTATCCCACTTCATAAAGGAAAAGAAGCT 18351 29 100.0 32 ............................. GGCGGCACTGGCGAACTGCACGCGACGCTTAC 18290 29 100.0 32 ............................. TCACGCTGACACATTTCTAACACCGCTCCAGT 18229 29 100.0 32 ............................. CTAACAACCAGTTGCAATTCCAGGCGCAAGCT 18168 29 100.0 32 ............................. TTAAGTTGTGAATGAAATGTTAAATATGAATT 18107 29 100.0 32 ............................. GATGGTTTGAAACAGGCCAGCCTTTTTAGCCC 18046 29 100.0 32 ............................. AAATAGGATACTACATGAATACAATTCTTAAC 17985 29 100.0 32 ............................. CGATATTGCAGGCTGGAGAGCGCGGAAATGGT 17924 29 100.0 32 ............................. TCGATGATGTAGTTTTTAAAGACGTGCGCCTG 17863 29 100.0 32 ............................. GAATGAAAGAGAAAATATGCTGGCAGTTGCAG 17802 29 100.0 32 ............................. AATTGAACGTCACGCAATACACTATCGCTGAC 17741 29 100.0 32 ............................. CACAATCAACTTTGATGTAAGTGATTTCACCC 17680 29 96.6 32 ............................A CTTGTCCTACTGCAATCATGTTAGGATTGGAA 17619 29 100.0 32 ............................. AGCTACTTTCTTTTTATCCGAGAAATCAAAAA 17558 29 100.0 32 ............................. GGTTTCATACAAATCATTCGCTAACTCTAGCC 17497 29 100.0 32 ............................. CGCGCGTCAAAATACTGGCCTCGCGCTGAGCG 17436 29 100.0 32 ............................. CTTGGAAGAAAATACAGAATAAGCGAAGCCAC 17375 29 100.0 32 ............................. TAATTGTAAAACAAATGCTCGTCGCATGTGGC 17314 29 100.0 32 ............................. TTTGCACTGGCCCCACTTAATGCTCCCAGTAG 17253 29 100.0 32 ............................. TGTTAATTTCACAATGCCCACAATGTGAGCAT 17192 29 100.0 32 ............................. GGATGGACATTAAAACACGCTCACATGCCTGT 17131 29 100.0 32 ............................. GCAATTTATTAATTATTAACGATAAAACAAAT 17070 29 100.0 32 ............................. AGATTGCGGCGCTGCTGGCTGATGAGACCTGG 17009 29 100.0 32 ............................. CGTTCCGACTGGAAAATGATGCTTTCAGAAAT 16948 29 100.0 32 ............................. CGACCGCTCAGGCCGTAAACAGGGTTGCAGGT 16887 29 100.0 32 ............................. CCACAAACATAACCACTTTGACCCGTATATTC 16826 29 100.0 32 ............................. TGAGGGGGAATGTCAAAAAATGTAGTGATAAC 16765 29 100.0 32 ............................. CTATTCCTGATTCATCAATCAAACCCTTACTA 16704 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATGTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22409-20975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZX010000001.1 Pectobacterium versatile strain IPO:0139 NAK:93 PCC:139 GJPAHMEL_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22408 29 100.0 32 ............................. CTCTTGCCATTACTCACCCCACAATGAGGAAA 22347 29 100.0 32 ............................. TTGATGCTTTCGACAATCAGCGCCAATCCACC 22286 29 100.0 32 ............................. TCGTAGCCCACACCCTTCCACTTCTTCATATC 22225 29 100.0 32 ............................. GCAGGTGAAAGCAGCGGAGGCGGCACTGAAGA 22164 29 96.6 32 ............................C GAAACGGAGGAAAGCACATTGAGACTTGAAAG 22103 29 100.0 33 ............................. TTATCTTTATAGCACAGCAGGACGCTGACGAAC 22041 29 100.0 32 ............................. CGCACTCAGAAAACCATCTGTATCGTCATTGG 21980 29 100.0 32 ............................. CCTGATGAAATCGCGCTACGGGTAGGGAATGC 21919 29 100.0 32 ............................. CTACTCAGGCGCGGCACACTCAGATCGCTGAC 21858 29 100.0 32 ............................. TTGAACGCGATACCAGCCGACACCATAGCAAT 21797 29 100.0 32 ............................. TACCAGGTTGCCCCGATCTGGCGGCTTTTCAG 21736 29 100.0 32 ............................. ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 21675 29 100.0 32 ............................. CGCCTGCCCGATAAAATCATTTCTGATGTGAT 21614 29 100.0 32 ............................. CGAGAAATAGCAGAAATGGACGGCAAGAAAGC 21553 29 100.0 33 ............................. CTAAACGCGGTGAGCTCGATACGCGTGAAGATG 21491 29 96.6 32 ............................T CCTTGCCGTGACAATGCGGGCAAGCCTGGTGC 21430 29 100.0 32 ............................. AGCAACAGGGGATAAATTTTGCTCAATGAAAC 21369 29 100.0 32 ............................. TGAGTTCGAGGTTTAATCATGAAACTACACCC 21308 29 100.0 32 ............................. AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 21247 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 21186 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 21125 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 21064 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 21003 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 222598-221070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZX010000009.1 Pectobacterium versatile strain IPO:0139 NAK:93 PCC:139 GJPAHMEL_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 222597 28 92.9 32 ............GT.............. CTATGCGGCTGCCTAACGATGCCTGTGTTAGT 222537 28 92.9 32 ............GT.............. GTATCCAGGTGACCTGTCTCAGTTTGCAGCTC 222477 28 92.9 32 ............GT.............. GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 222417 28 96.4 32 .............T.............. AGGACACGTTCCCAGTCGGCTAACAGGCTTTG 222357 28 96.4 32 .............T.............. TGCATCACGCTGGCCAGCGTGCCGCTCTTTAT 222297 28 100.0 32 ............................ TAATGCTGTTTGTGAATCGCGGGTTCTTCCGT 222237 28 100.0 33 ............................ TGACTCGGCAGCAAGCCTGACGGTACTTCTTTC 222176 28 100.0 32 ............................ TGTCAGCGCGAAAGCGAATATCACACAAAGAA 222116 28 100.0 32 ............................ GGGTCTGGCGTAGCAACCTGCGCGGTCAGTGC 222056 28 100.0 32 ............................ ATCCAGCAGGCCGGGGGCGCGACTCACTATCG 221996 28 100.0 32 ............................ CGACGCAGTGGGCGGCAATCGGCGTTCTCGGT 221936 28 100.0 32 ............................ CGATTTGCGAGGGGAATTTTTGCGAGGGTTGG 221876 28 100.0 32 ............................ TATTAGCATCCTACGGGCAGACTTATTTGATG 221816 28 100.0 32 ............................ TAAAGGTTGGGCTATAGAAAATGGGCGACTGA 221756 28 100.0 32 ............................ ATTCAGAGCGGCCACCAGAATCCCAAATGGGA 221696 28 96.4 32 .............T.............. GGCAAACGCAGATACGAGCGTTAATTCTGTAT 221636 28 92.9 32 ...........C.T.............. AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 221576 28 89.3 32 ...........C.T.......C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 221516 28 92.9 32 ...........C.T.............. GGACTGAACGGATTGATCGGGCGGGATATTCA 221456 28 92.9 32 ...........C.T.............. TCCTTCGCCAAGATCAGCGCTTACTTCATATA 221396 28 96.4 32 .............T.............. GTTTAATGGGTTTGTGAATTGCGTTCCTGCAC 221336 28 85.7 32 .......A.T...T...T.......... ATGACTGATCATGCGCTGGCTGGGGTATGGGG 221276 28 92.9 32 .G...........T.............. CCCGATGCACAGATGTCTGCTGAGACACAGGA 221216 28 85.7 32 T.........TC..G............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 221156 28 96.4 32 ...........C................ GCAATTGCTGAAATCGATGCACAAGCGGCTGT 221096 27 89.3 0 ......................-...TG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 231171-234562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGZX010000009.1 Pectobacterium versatile strain IPO:0139 NAK:93 PCC:139 GJPAHMEL_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 231171 28 100.0 32 ............................ CACCGCCAAGCGCTCCGCTCTTTAACATCGAT 231231 28 100.0 32 ............................ ATGACGGAATCCACGACCTGAGAAATCAACAT 231291 28 100.0 33 ............................ AACCGTAACCGATGGTTAGCACACCAACAGAAT 231352 28 100.0 32 ............................ TTCATTAGATTGTTTTCTGAAACAAAGAGTAG 231412 28 100.0 32 ............................ AGTCACTCATTACCGGGGAGTATTACTTCTCG 231472 28 100.0 32 ............................ AGGCTGAAAGACATAATTCGGCATGTCGTTGA 231532 28 100.0 32 ............................ CTGATGTGCTGTGGGAAGCCTGCTGCGAGTAT 231592 28 100.0 32 ............................ TAATACTGATGGCGTTGTTGACCGGTTGCTCA 231652 28 100.0 32 ............................ GTCGTGGGCAAATGCGTTTGAGATATACATCA 231712 28 100.0 32 ............................ TGACTAAAAAGGAGGTTGGGATGAAGTACGTT 231772 28 100.0 32 ............................ GTCCAGGGTCATAGCATGGCAGTTTACGACGC 231832 28 100.0 32 ............................ ACCAACCTTGCAAGCGAACTGCGCCAAAACGA 231892 28 100.0 32 ............................ TCAGTCTGCGGCTGTAGCGCCTCTGGAAGAGA 231952 28 100.0 32 ............................ AGCAACGCCATTCCGTACCGTGCAGCACTAAT 232012 28 100.0 32 ............................ AATGTAAAGTTTTGAGAGGGCATCGATACGAC 232072 28 100.0 32 ............................ CATAGGGGCTGGCGCTGTGTGTTATTGAAAGG 232132 28 100.0 32 ............................ AGAAGCGACAGAAAGAGAAGCAGCAACAAGAT 232192 28 100.0 32 ............................ ATGGGGCCACTCTTCCAGTAGCCGGTCGTTAT 232252 28 100.0 32 ............................ AGTTGCTGAACGAGATAGCGCATCTGCTCTGC 232312 28 100.0 32 ............................ TCACCGTCGAGAAATGACTTTGAATCGATAAA 232372 28 100.0 32 ............................ AAATGGACCATCGCCATTCGCCGCCATTTTCA 232432 28 100.0 32 ............................ AATTACGATGTACTGCATACCCCCAGCAGGTA 232492 28 100.0 32 ............................ CATTCTAACGGAGATCAAAATGGCATTTGTAT 232552 28 100.0 32 ............................ AGCTCGCCTCTCCGTTTTTTCACGCTATCAAC 232612 28 100.0 32 ............................ AAACTTCGCAGACGTTCTGTTGTTGTGGGAAC 232672 28 100.0 33 ............................ AGCGTAATACATGAAAACCCCACGCTGCTACGG 232733 28 100.0 32 ............................ GGTGGAATGGGGATGGATTTCCACCACGTCAC 232793 28 100.0 33 ............................ GTGAAAATGCTACTCATCATTAACAGGCACGGG 232854 28 100.0 32 ............................ GCGACGATTGCAGGGTTAACGATGAGATAGCT 232914 28 100.0 32 ............................ ATAGCATCGGGCTGTTCTCCGGTTGCTGTTAC 232974 28 100.0 32 ............................ TGTTTGTTGCCTGCGAATGGCTTATCTTCTGT 233034 28 100.0 32 ............................ ATGTCTTTGGAGAGGTCATATCTGCCGCCGTA 233094 28 100.0 32 ............................ TCGTCGCTGAAATCCGAGAATGATTTTAATGT 233154 28 100.0 33 ............................ CGCAACCGCTAGAAGGATGACCGCATGACGCGC 233215 28 100.0 32 ............................ ATTAGTCGAGGTGAGTCAGTTAGTTTTTTTCA 233275 28 100.0 32 ............................ AGTTTGCCGCGCAATTTAATGCACTGCTGGAA 233335 28 100.0 32 ............................ CGCCACGCTCAATCCCTTTCACCTGCCCTCCG 233395 28 100.0 32 ............................ ATCGTGGATGGACAGGGGCGAACCAGCCAAAT 233455 28 100.0 32 ............................ TATGGCCTGGATCTGTTTCTCCAGTGCCGTGT 233515 28 100.0 32 ............................ GTCAAACGGTAGCGCGTATCAAAGAAAAATAC 233575 28 100.0 32 ............................ AGTGCCTGCAAGGTCGCCAGTTCTAGCGGAAT 233635 28 100.0 32 ............................ GAAGGGCGGGGAGACGGCGACGCATAAAGTGA 233695 28 100.0 32 ............................ AGCACCGTGTCAGCCACAAATGCCGGTAACGT 233755 28 100.0 32 ............................ ATTCCGCCCGATCTGCCCGCGTCTACGGCAAC 233815 28 100.0 32 ............................ GAATGGAACGATGACCGTAAGCGCTTTGAAAA 233875 28 100.0 32 ............................ ATTTAGCCCAGCTCGTTATCGTCAAGCCATTG 233935 28 100.0 32 ............................ ATAGCCATGCTGGAGTAGATCAACCAGGCGAC 233995 28 100.0 32 ............................ TACGCCGTTCCCGTCTATACGCATTCCTCATC 234055 28 100.0 32 ............................ CATGCCGCCCCGTCATCATATCGGCGATGCGA 234115 28 100.0 32 ............................ AGTTTGCGCCAGTACGGGCGGTCGGCAAATGA 234175 28 100.0 32 ............................ GTGCGATGTTGTGCTGCATGCGCAACGGCATA 234235 28 100.0 32 ............................ GTCCAGAAATACTCACATCGGTCGCCATTATC 234295 28 100.0 32 ............................ TTAATCCGGTAACTGGCGAAGAGGTGGGAGAA 234355 28 100.0 32 ............................ AGCGGAGTAAGTGCGGATGATTACTGACTTGC 234415 28 100.0 32 ............................ CCTAAATCGGGATAGCGCATTGAGTACGCCGT 234475 28 96.4 32 ........T................... TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 234535 28 82.1 0 ...........C........T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCGGTGACGCCAGCGGAATAAATCGCAGGCTAACTATTTGATAAAGAAAAATATAATCGTCAAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCCATTTCACAGGTTTAATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //