Array 1 54-937 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGJ01000013.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 07-0123 NODE_13_length_107296_cov_3.81627, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 115 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 176 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 237 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 298 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 359 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 420 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 481 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 542 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 603 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 664 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 725 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 786 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 847 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 908 29 93.1 0 A...........T................ | A [934] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1605-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGJ01000016.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 07-0123 NODE_16_length_103551_cov_3.73999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1604 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 1543 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 1482 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 1421 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 1360 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 1299 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 1238 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 1177 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 1116 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 1055 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 994 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 933 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 872 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 811 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 750 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 689 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 628 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 567 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 506 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 445 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 384 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 323 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 262 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 201 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 140 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19727-18112 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGJ01000016.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 07-0123 NODE_16_length_103551_cov_3.73999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19726 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 19665 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 19604 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 19543 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 19482 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 19421 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 19360 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 19299 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 19238 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 19177 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 19116 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 19055 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 18994 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 18933 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 18872 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 18811 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 18750 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 18689 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 18628 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 18566 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 18505 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 18444 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 18383 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 18322 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 18261 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 18200 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 18139 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //