Array 1 30335-31382 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHF01000001.1 Escherichia coli strain 630 BN4_630_1_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30335 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30396 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30457 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30518 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30579 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30640 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30701 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30762 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 30823 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [30847] Deletion [30864] 30865 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 30926 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 30987 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 31048 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 31110 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 31171 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31232 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31293 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31354 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56932-58180 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHF01000001.1 Escherichia coli strain 630 BN4_630_1_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56932 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 56993 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 57054 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 57115 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 57176 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57237 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 57298 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 57359 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 57420 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 57481 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57542 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57603 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57664 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57725 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57786 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 57847 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 57908 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 57969 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 58030 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 58091 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 58152 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //