Array 1 36317-38008 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAZG01000029.1 Roseburia sp. 1XD42-69 Scaffold29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 36317 32 100.0 34 ................................ TGAATCCTCACCACCGTTATCCCCAAGGGATTTC 36383 32 100.0 34 ................................ TGAGCGTTGTAATCCCAGAAACCGCCGTGAACAA 36449 32 100.0 34 ................................ GTCAATATCTTCACGCTTGTTTTCAGCTTTTCTG 36515 32 100.0 33 ................................ CAATTAGAATTAGAGGAAGTATTATTCACATTC 36580 32 100.0 37 ................................ TTATGGTAATCTAATGAAAAAGTCTTTATTTGACCCG 36649 32 100.0 35 ................................ TTTTCCTCCTTTTTATTCCGCCAGCTCTGCACCGG 36716 32 100.0 34 ................................ CCCTGTCAGCCATCCTATAAGATAGCCCGCAACA 36782 32 100.0 34 ................................ TTAGCATAATTTCCTGTCTCTCCCGGATAAGGTC 36848 32 100.0 35 ................................ TTGTGATTTGCATTTTTTCTTTCCCTCCTTCTTTT 36915 32 100.0 36 ................................ TCTTCCTCCCGGTATCCGGATTCCGGCTTTGTCGTC 36983 32 100.0 33 ................................ CATTACAGAATGTCCTCTTTCTCCTCCCCATCC 37048 32 100.0 35 ................................ AACACAACCATAGAGCAGGACTTGGAGCGGATTTA 37115 32 100.0 33 ................................ CGTATTGACCTTCTGGTAGGATATTGTGGCATT 37180 32 100.0 34 ................................ TTTACTCACGGAAAAGCTTGCCTTGCCTGTCTCG 37246 32 100.0 35 ................................ CCACAACGTTACACAGAGATTAGAGAATAGAGATA 37313 32 100.0 34 ................................ ATGCATGATATTTGGGAAATGCGCCGGACAAAGG 37379 32 100.0 35 ................................ CATATTTAGATTTGGGGCATGCATTGAAAAGAAGC 37446 32 100.0 33 ................................ TTCTTCCGTCCATTCGCAAGTATCAAAATCATA 37511 32 100.0 34 ................................ AGGTTGCGTGTGCGCTGACACCTACGGCACAACC 37577 32 100.0 34 ................................ AGGTTGCGTGTGCGCTGACACCTACGGCACAACC 37643 32 100.0 34 ................................ CCTTGGTCTGACTGTGTTGTTCGCAGTTCTGCAA 37709 32 100.0 37 ................................ ACAGATTGTGCATTTTGACGAGATCTTTGCAACGGAA 37778 32 100.0 33 ................................ AAACTGCCATCCAAATATAGAGCCAAGCGCATT 37843 32 100.0 34 ................................ ATCAAAATTAAAGTGCAGTCCAAAGTAATCAACT 37909 32 100.0 36 ................................ TTTGGCGTGTTTTGTTGTGTTGTGGGTACTGGAATA 37977 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 100.0 34 GTCACTCCCTGTGTGGGAGTGTGGATTGAAAT # Left flank : GGATTTGGAGGAATACCCACCCTTTTTATGGAAGTAGGTGATGGAATTGTTAGTACTGATTACATATGATGTTTCCACCCAGAGCGCTGCGGGAAGAAAGCGGCTGAGAAAGGTTGCAAAGGAATGCGTAAACTATGGGCAAAGAGTTCAAAATTCAGTATTTGAGTGTATTCTGGACTCCTCACAACTGCTTACGGTTAAGGATAAATTAATGTCTATTATTGATGAAAAGGAAGACAGCCTGCGGTTTTATAATCTGGGCAATAAGTATCAGCACAAGGTTGAGCATTTTGGGGTTAAAGAGTCCTATGATGCGGAAGGAACACTAATGATATAAGCTGTGCGAACCAGAAGTGAACATTATTTTCCAGGGGGGTTCGCACCAGATTTTTTATGGAAATAGTATAATAATTTTAATAAACCAGGCATATGAGTCGGCGGGTTTGTTGGAATTCAATAAATTAGAACGCAAGATTGCTGAAAGATTAGGCAATTTTGCT # Right flank : TTTACAGATACTTGCGTCGGAACTCAACGATCGCCTACGTCACTCCTCGTGTGGAAATTTAATTTACTAAGATAACAAACAATCTGTTAATATATTTTTCATTAATATATGTTTATCTGATGAGGAAAAGTGATTTTCTTATGATAATGTATTTACTAAACAATGAAGTGTTAGCAATCATGAAAAGAATGAGAATCTTATCTTAGAATTGGAATTATTTAGCGCAGAAAAACATCAGGCTTATGAGGAGCCGTCATTTAAAAATTTACAAAGTGTAACAAAGTAACGTATACTCATTTTGTAAAGAGAAGCGATTATGAAAGCAGAATTAGATAAGAAAACGATTATAGAAACAGAGACTAATATGACAGATGAGAGAGGTATTGACTAATGTAAACTAAAAATCATTAGCTGAAGAATAGGGAAACAAATATAGAGGTATGTTATTCCTATCGTGATTTTGTTTCCCAACATAAGGGCTTGTTTGAAGTTATGCAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55629-54668 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAZG01000003.1 Roseburia sp. 1XD42-69 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 55628 32 100.0 34 ................................ TTTGAAAATTTAATAAAGAAAATCAATGAATTAA 55562 32 100.0 33 ................................ GATATAGACAACGACATCAAAGTGTTAGAAGAG 55497 32 100.0 33 ................................ CCTATTACCATCATTTAAGTCATAAGTAACAAT 55432 32 100.0 34 ................................ CGAGTTAAAAAAATCCCTAAATCAGTACGAAAAT 55366 32 100.0 34 ................................ GATGTAAATACCCGTTGGCGTCCGTATAGTCCTC 55300 32 100.0 34 ................................ CCTGGTACGCATCTATTGCCTGCTGCAGCCAAAC 55234 32 100.0 34 ................................ TTACTATTGGCCAGGAGCAGCCCACAGTGCTTGC 55168 32 100.0 35 ................................ ATCATATCTGCCTGTCTTGCAGGAGTGTTAGATAT 55101 32 100.0 35 ................................ TCGGATGAAATATCCGATGCAAAGAAGTACTTACA 55034 32 100.0 34 ................................ CATCAACTCAACGAACCGTCTTGCATCGCCACTT 54968 32 100.0 35 ................................ TGCGATGTCCTCATACTCATTCTGGGGGTCAACGA 54901 32 100.0 34 ................................ GAAAAATGAAGGAATTCCGTGCGAATCGGCATCC 54835 32 100.0 35 ................................ CTTCTGCCGCTTTACATATCAGTCGTTTTTCCCTT 54768 32 100.0 37 ................................ ATAGATATGCTGACGATGTTTGACACGTTCCTGCAAT 54699 32 93.8 0 .............CA................. | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.6 34 GTCACTCCCCGTGTGGGAGTGTGGATTGAAAT # Left flank : ATCTTATGAAAAACCTGAAACGAATATCAGCCCTTCTTGGAATTATACTTTTAGCCGGGCTTTACCTCACCAGCCTGGTTTTAGCTTTAACCAGTAATGCCCACACCTTTGAATTCTTCGTGGCCTCCATTGCCGCTACCGTAATTATCCCCATTCTGCTTTGGATTTATACTGCCATGTATAAATACCTTACCAAACACAAATAACTTCAAAATTCAACATTTGCGTGTATCCTGTACCCTTCACAGTTGGTTATGGAAGATAAATTCATGTCAATTATTTATGAAAAAAAAGAAGGCCTATATCCTATGATGCAAAAGGAATACAAATAACATAGGCTGTGCGAACCTTAAGTGAACATCATTTTCCAGGGAGGTTCGCACCAAGTTTAGGGTGAAAATAACACTATAATTTCAACAAACTGGGTATATTATGTTGCAGTTTTGTTGGAATCAGACAAATCAGAGTGCAAAGTTTCCGATAAATTCAGTAATTTTGCT # Right flank : AAAGTTTAACTGTAATTTCTTTTACAAAAAAGGAGCTGTGCACCATTTTCGTGCAACAGCCCCTTTCCTAATTTCCATAGAGTCGCTGATTAATCCAGCCTTTCCTAAGGAATTGTTATTAAATCTTTACATTTGGCTTGGCTTGATTCGCACACAACTGCCTTGTCGTCAGTTGCCGCAGCCCGCTACGGTGTCATCCTCCGCCTTGCATGTACGAAACAATCCGGCGCCAAATTGCAAAATTTTTCATTAACAGTTCCTAATTTTTCTTCAATTTTGAACTGCGGTATATAATATCGTCCCTTCCCGGTCCGTTTGATACCATGGTGATGGGATAGCCAATCTGCTCCTCCACAAACTCTACATATCTGCGGCAGTTTTCCGGAAGATCCTCAAACTTCCGAATTCCCAGAATGTCTTCTTTCCACCCTGGAAGTGTCTTTAACACCGGTTTTGCCTTTTCCAGTTTTCCTGTGGTGGGAAACTCTGTGGTAACTTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGTGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA //