Array 1 948113-949605 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023311.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4596 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948113 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948174 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948235 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948296 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948357 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948418 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948479 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948540 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948601 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948662 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948723 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948784 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948845 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948906 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948967 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949028 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949090 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949151 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949212 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949273 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949334 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949395 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949456 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949517 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949578 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965737-967701 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023311.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4596 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965737 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965798 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965859 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965920 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965981 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 966042 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966103 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966165 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966226 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966287 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966348 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966409 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966470 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966531 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966592 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966653 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966714 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966775 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966836 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966897 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966958 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967020 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967123 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967184 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967245 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967306 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967367 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967428 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967489 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967550 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967611 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967672 29 96.6 0 A............................ | A [967698] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //