Array 1 137609-138648 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQR01000003.1 Escherichia coli strain AF31-11BH AF31-11BH.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137609 28 100.0 32 ............................ GCTGACGAACGTACCAGGGTGCACAGGCCATC 137669 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 137729 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 137789 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 137849 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 137910 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 137970 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 138030 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 138090 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 138151 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 138211 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 138271 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 138331 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 138391 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 138451 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 138511 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 138571 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [138619] 138619 28 78.6 0 CC..................A...C.CT | T,C [138637,138641] ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 147708-148637 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQR01000003.1 Escherichia coli strain AF31-11BH AF31-11BH.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 147708 28 100.0 32 ............................ AGGGTCTGATGCGATTTCCCGAAAGAAATATA 147768 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 147828 28 100.0 32 ............................ GGAAGCTACATTGAGCACGCACGCTCAATATT 147888 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 147948 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 148008 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 148068 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 148129 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 148189 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 148249 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 148309 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 148369 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 148429 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 148490 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 148550 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 148610 27 92.9 0 .......................-C... | T [148630] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //