Array 1 271009-271952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWW010000001.1 Escherichia coli isolate SC411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271009 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 271070 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 271131 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 271192 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 271253 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 271314 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 271375 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 271436 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 271497 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 271558 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 271619 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 271680 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 271741 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 271802 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 271863 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 271924 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 297652-298717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWW010000001.1 Escherichia coli isolate SC411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 297652 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 297713 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 297774 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 297835 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 297896 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 297957 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 298018 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 298079 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 298140 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 298201 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 298262 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 298323 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 298384 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 298445 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 298506 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 298567 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 298628 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 298689 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //