Array 1 18891-18397 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXD01000011.1 Ruminococcus sp. AF16-50 AF16-50.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18890 32 100.0 36 ................................ CTTGTCTGCTTTTAAGTCTGTTGGTTTAGTTACCGA 18822 32 100.0 34 ................................ CGTGCAAATCATATGCAGAACCAATTTCAATTTC 18756 32 100.0 34 ................................ ACAAATGATGTTAAGTCATTCCATGACTTCTTCA 18690 32 100.0 34 ................................ ATTACGTATATCTTCAATGGCATTGATACAACGG 18624 32 100.0 33 ................................ ATCTTTAAGAATTTTAACAGCTTCGTCACGATG 18559 32 100.0 34 ................................ GCAGAGGTAAACATGCCAAACGTATATAAATGGG 18493 32 100.0 33 ................................ TCAAATTTATTTTTTTACAACAGTTCTGGACAC 18428 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGAACCACAAATCCCTAGTAAGTTCGCATGAAAATACCATGCTATTTGTGAATGCACAGTGAACAAAATCAAATCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : ACGATAATGTAAAAAAGAGAGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACTTAGATGAAATGTCAACTGTATGTAGGGATAATCAGAATAATGTAAGTATCGCTGTAAATCCCGATTCTGAAAGGCAGGGATATCCATATTTCAAATTTTATAATTCCGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGATAATAAAAATGCAGAAGACCACAAGCTATGGAAACTTTCGCATAAAGAAAAAAAGTTGCTTAAAGAACTTTTGAGTAGTCCTCCTGCAGAATATTCAGATATGACTTTTGGGGAAGCTTGTAAATTTGAGTGGACTTTTAAATATTTAGAGAAATCTATTAACTTAGATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCCTACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35573-35205 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXD01000015.1 Ruminococcus sp. AF16-50 AF16-50.Scaf15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 35572 37 100.0 29 ..................................... GCCATAATCAAAACCTCTTTCCATCACTT 35506 37 100.0 28 ..................................... ATTAACCATGTTTTACACTCGTCATCGG 35441 37 91.9 29 ..........G....G.......A............. ATGCTCACTGGCTTGACAGTCCAGCCATC 35375 37 91.9 29 ..........G............A............G AAAGATAAGGGAGTGCTGCATTATTAAAG 35309 37 94.6 30 ...............G.......A............. CCTCGATTACGTTGTATGTGCCGATTGGGG 35242 36 81.1 0 A.........G....G.......A.....-.G...G. | CG [35210] ========== ====== ====== ====== ===================================== ============================== ================== 6 37 93.2 29 CTACTACACTAGTGCAAATTTGCGCTAGTCTAAAACT # Left flank : TAACAACAGACAGGAGGGGATAAAAATGGGAAAGACGATCCTTAAGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGAGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGAAATTGAGAGCTGTGACGAGATCACAATAGACTAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGGTGAAATTACAACAGACGGGAGGTGATAAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTATTAAAGCGTCGATAAGATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCCCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGCTGCTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTCATGGTGTAAACGAAGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTAGTGCAAATTTGCGCTAGTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //