Array 1 91613-92723 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDR01000004.1 Escherichia coli strain MOD1-EC6056 MOD1-EC6056_4_length_299508_cov_39.1607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91613 28 100.0 32 ............................ AACACCATAATAAGATTCGCCGTTTATAGTAA 91673 28 100.0 32 ............................ GCTAGGGGATGGATTGTTTGAGATACGAGCAA 91733 28 100.0 32 ............................ AGGTTGAGGCGACGGCAACTAAACTGCGTGGC 91793 28 100.0 32 ............................ CTGAATCGCACAGCTAAACACATGCACCGTGT 91853 28 100.0 32 ............................ ACGTTGTAGCAAAACACTGCCGGGCCGTGACT 91913 28 100.0 33 ............................ AGACTGCGGTTTCAATGCGGCGGATATTTTCGA 91974 28 100.0 32 ............................ AGCGAGGCTGCATACGTTGAGTGCCCACACTG 92034 28 100.0 32 ............................ GCATGAGGCACCGCCCTGCACCGGTATTTTAT 92094 28 100.0 32 ............................ TACCGTTTCCCGCATGGAGAAAAACGCCACAA 92154 28 100.0 32 ............................ AAACGTGCGGCGGGCGTCGTGACACGTAAATC 92214 28 100.0 32 ............................ GAACATAAATCAAAGTGGAACCGTGCGGAACA 92274 28 100.0 32 ............................ TCTTCTTCCTGTTTTACTCCCATATGCGGGAA 92334 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 92394 28 100.0 32 ............................ TGTACTGCCTGATGGTCGATAACCTGTCCGGA 92454 28 100.0 32 ............................ GTTCGAGCGCCCGGAGTTCACAAAACTACCCG 92514 28 100.0 32 ............................ AAAATTCATGTTCCGCTGCCAGTTCGCGGGGA 92574 28 100.0 32 ............................ TCTGAGCGTAAATCATAAGCTGGCTGATGCAC 92634 28 100.0 32 ............................ CGGCTGCACGAATTCGCGAGCGAACTGTTTCT 92694 28 85.7 0 ....................A...C.CT | T,C [92714,92718] ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGCTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101780-103008 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDR01000004.1 Escherichia coli strain MOD1-EC6056 MOD1-EC6056_4_length_299508_cov_39.1607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 101780 28 100.0 32 ............................ GCTCTGTTGGATGAACGCGGCGCATTAACAAC 101840 28 100.0 32 ............................ CAGCGGAGTTTTTGACTGAACGAACCCCTGAG 101900 28 100.0 32 ............................ CTAATACCCCTGACGCCGCTGCCGCCTGGATA 101960 28 100.0 32 ............................ AGCCCGAGTGCCTCCGGTCGTAATCTGTGGTG 102020 28 100.0 32 ............................ CAATGGGGTGATTGAATATTTTGCCATCAGAC 102080 28 100.0 32 ............................ ACCGCCGGGGCGGCTTCCCCAATAAAAAGGAA 102140 28 100.0 32 ............................ ATCTGGCGGTCGCGGATCAATGATGGACAAAC 102200 28 100.0 32 ............................ CACTGCTCCCGTTTGCGCTCTAAATATTTACG 102260 28 100.0 32 ............................ GCAAGCAGCTCAGGAATACAGAATGTGCAGCT 102320 28 100.0 33 ............................ GGGCCAACGCATATCACCGAAACGCTGGTTGTT 102381 28 100.0 32 ............................ TGCACGATTTCCCCCGGAGTGTATCCGTGTGA 102441 28 100.0 32 ............................ TGTCTGATCCGTTTCGCCCCCGTTTCGCTGTA 102501 28 100.0 32 ............................ GTAGAGGGTATCGACTGGGACGTAATTTTATT 102561 28 100.0 32 ............................ ACTCATCATCGTATAAATCTTTCATAGCCACC 102621 28 100.0 32 ............................ GCCCAGGACTCTTCGCCGTAGATGCCGCGCCA 102681 28 100.0 32 ............................ AAGTGCAACGGTTGCCAGCCCGCTGAATGAAC 102741 28 100.0 32 ............................ TGCACGCTGGGCAGTGCCCTGACCGGTGCGAA 102801 28 100.0 32 ............................ AAGTGCAACGGTTGCCAGCCCGCTGAATGAAC 102861 28 100.0 32 ............................ TGCACGCTGGGCAGTGCCCTGACCGGTGCGAA 102921 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 102981 27 92.9 0 .......................-C... | T [103001] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCAATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //