Array 1 879213-886977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044225.1 Mycoplasma gallisepticum strain ts-11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 879213 36 100.0 30 .................................... CCTCAAATTAAAAAAGATATTTTAAAAAGT 879279 36 100.0 30 .................................... AAAGCGTTTGGCGAATCAATCGAATACTTA 879345 36 100.0 30 .................................... TCAAACGAAAAAATACTTTTGGCGACAACA 879411 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 879477 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 879543 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 879609 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 879675 36 100.0 30 .................................... GATTAATATATCAAAAACAAAGTTAGGTTA 879741 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 879807 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 879875 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 879941 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 880007 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 880073 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 880139 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 880205 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 880271 36 97.2 30 ..............T..................... TCGGTTATTGAGATCTTGAAACACAAGGAA AA [880284] 880339 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 880405 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 880471 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 880537 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 880603 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 880669 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 880735 36 100.0 29 .................................... ACAAAAATGATGTTTATACAACCTAGTTT 880800 36 100.0 31 .................................... TTTGTTTTTTATCTTGATTCAAAAGACATCA 880867 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 880933 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 880999 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 881065 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 881133 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 881199 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 881267 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 881333 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 881399 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 881465 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 881531 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 881597 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 881663 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 881729 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 881795 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 881861 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 881927 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 881993 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 882059 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 882125 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 882191 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 882257 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 882323 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 882389 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 882455 36 100.0 30 .................................... CCAATTTACAAAACTCTGCGAGTGCTCAAT 882521 36 100.0 30 .................................... CAATCTCAACTTTAGATCAAAAACTGTTAA 882587 36 100.0 29 .................................... GATTAATATTTCAAAACCAAACTAGGTCA 882652 36 100.0 30 .................................... AAATGGAAAACGAACAACAAGATAAACAAG 882718 36 100.0 30 .................................... TAGAGTTTTTCAAAAATGCTTACATGAATA 882784 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 882850 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 882916 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 882982 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 883048 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 883114 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 883180 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 883246 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 883313 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 883379 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 883445 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 883511 36 100.0 29 .................................... AAAACTTAACTAATTTAACACAAAAGTTG 883576 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 883642 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 883708 36 100.0 32 .................................... TCCACCACCCCACTGTCCTACACTATTACCGT 883776 36 97.2 30 T................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 883842 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 883908 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 883974 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 884040 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 884105 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 884171 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 884237 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 884303 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 884369 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 884435 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 884501 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 884567 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 884633 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 884699 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 884765 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 884831 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 884897 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 884963 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 885029 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 885095 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 885161 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 885227 36 100.0 29 .................................... TCCCATTCTATTTTAACGTTTGAAATGAA 885292 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 885358 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 885424 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 885490 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 885556 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 885622 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 885688 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 885754 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 885820 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 885886 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 885952 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 886018 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 886084 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 886150 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 886216 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 886282 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 886348 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 886414 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 886480 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 886546 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 886612 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 886678 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 886744 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 886810 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 886876 36 100.0 30 .................................... TCTTCACGTAAATCAAAGTTACCAGAATAC 886942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 118 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //