Array 1 170549-168623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXU010000014.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 170548 36 100.0 39 .................................... CGGCATCGCTCGCAATGATAGCCGTCAAATCCGTGCGAA 170473 36 100.0 35 .................................... TAGGTAATCTTGTTCCCTAATAGAAAGATACTCAC 170402 36 100.0 39 .................................... CAGGGAAGTAGTTTTCCAAAGCGTACACTACACTTGCAC 170327 36 100.0 37 .................................... AAACGTTTGCGTGCGTTCTTCTACGATCAAACGAAAA 170254 36 100.0 36 .................................... GATAATATCTGATTTCGCTTCAATCAGCTTGTCGAC 170182 36 100.0 36 .................................... AAGGGTAAAAATACGTTGATTTCTTTTGAGTGATCG 170110 36 100.0 37 .................................... TGAAGTAATAGAAAACCCCGCACCCCGAGCCGACCAA 170037 36 100.0 36 .................................... GAACTTCTTGCCGCCGGCCGCCTTGCGGTTCTCCGG 169965 36 100.0 38 .................................... GGTCCGACCAACGGTTGTGATAACCAGCATCGCCCACC 169891 36 100.0 35 .................................... CATCCTCGGCATGTTGGGGTTGAGATACTCCAACG 169820 36 100.0 36 .................................... GCGTCAATCGCGTCGAGTGCGTATCCGATCGCTCGC 169748 36 100.0 37 .................................... GTGGAAAAGGTTGCCCCGCCGACCCGCCAAGGTTCGG 169675 36 100.0 36 .................................... CCGTGATTTCGAGTGCTGCCTGATGATCGGTCACAT 169603 36 100.0 37 .................................... GAGGGTGTTTGGTTTCAATCGGCTCGGATAACCCAAC 169530 36 100.0 37 .................................... TGCTTTTCGATCGACGACCTGCCGCCGCCGCAGCCAA 169457 36 100.0 38 .................................... AAGGGTTTCGCCAGAGCCCACACCGCAGGCAATATCAC 169383 36 100.0 35 .................................... CTCGACCAAGCGAGCACGGTCAACCAAATCAACTT 169312 36 100.0 35 .................................... GTTCGCCGGATCGTATTTACCAGCCCGTTCATGTC 169241 36 100.0 36 .................................... TTGTTCATACACTTCGTAACTGGCTTGCTTAACCAT 169169 36 100.0 37 .................................... GAACCCTGCCGGGGGTGCTATCAGGAGAAAAAGCATG 169096 36 100.0 36 .................................... AGTCCTTCGCTATCTTCTAGCCGCACATAATGCTGG 169024 36 100.0 37 .................................... GGGTGAGTGCTTTCATCGCTGAGGGTCGGATAAACGG 168951 36 100.0 39 .................................... CGCGAGCGGATCGAGGGTGCGAAAGTGCTGCTCGATCGC 168876 36 100.0 37 .................................... TTGGCCTCGGCGCTCGCATACTGCCAAAAAACGCCGA 168803 36 100.0 37 .................................... GCCGAAGGCGTCAGTTTCTCGGCCGCGTGCGAGCAAC 168730 36 100.0 35 .................................... GCATTGCTGATCGCCGCGCTAGTGCTCGCGAGCTT 168659 36 97.2 0 ...........................T........ | T [168625] ========== ====== ====== ====== ==================================== ======================================= ================== 27 36 99.9 37 CCTTCCGCGTTCATTGGAACGCGGCCTCATTGAAGC # Left flank : ATCGCCGAATCCGTGGTCATCACAGCGGTCAACAACCGGATGGTCACACCAGAACACTTCACGCCCGGTGGCGAGGCAGTCCACATGACCGAGTCCGGACGCAAAGCGTTTTTCAGAGCTTATGAAATCCGGATGGATCAATTGGTGACGCATCCGCTGTTTGATTACCGTGTGAGCTATCGACGGTTGTTGGAAATTCAGACGAGACTGGTCGGAAAAATGATCTCAGGCGAGATTGAGGCGGCACCGATCTTCGTCACACGATAGAAATCTTTGACAACGCAATACCAGCTCGCGCAAGGGGCCATTCTCGCATAAGAAAGACGCGAGCGGTCAGGTAACGACCAATTCCCCCTCCCCGCTCGCAATCACAAACACGTGTAAAACATGAGCCAAACGTCGATTCCTCTCAATGGAAGAACCGCAATCTCATGAAACCAACGTACCGCTCGCAAAACGCTCCGAAATCGCCTAAATTTCTGGACATACGCCAGGGGCCC # Right flank : TCTTTGCCAGCAGTGCATGGGAATCGTCGCCATTTGAGAAGAAGCCGCAAACTCACGCTCTTCGTCCACGTTTCGCGCACGCGTGACTCTCTGGGTGAGTAAAACGTTCCGTCGATGGTCAATTTTACTCTGGCAGATCATTTGATCGTTTTGCCTCCGATGCGCGATACGAAGTTTTTTCGTTCCAGCGTGGTCCGTCGATGCGGCACGTCAAACTCAGCCTCGCCGACGCAGGTTCACAGCGGTTTCCACGAGAGAATCCTCGTCAAACCAACTGTCCAATCGAGTCAAACGGGCGGGCATGGCATCGGCGGCATGCGGCGCGTCATCACCGACGTTGCCATGTTTCACGATCACGGTCGCTCGACATTTCCAGCTGGGCGAGCATGTTTCACGCAGACACCGAAATGCTCTCAAATAGCGGGCATTGGGGCTGTTCGTTGACTCGAATCACTTGTCTTGGCAACGACATTGGGCATCATTGCAACGCTGTGCAGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCGTTCATTGGAACGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 233308-232019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXU010000010.1 Rhodopirellula rubra strain CECT 8075 Ga0372409_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 233307 36 100.0 30 .................................... TGTAGCCCTGCGCGGCTGGGCTTTGTCATG 233241 36 100.0 30 .................................... CCTACGACAATAATCAATTGATTGGTTACA 233175 36 100.0 30 .................................... TGAATTGGGCGAAATCGGAAAGAAGAATTC 233109 36 100.0 30 .................................... GGGTGCCGCCGCCGGTACCACGCTGAAGGA 233043 36 100.0 30 .................................... TTAGACAGCGTGATCGTCGGCACATACTGG 232977 36 100.0 30 .................................... TCTGCACACTCAACGAATCCGGAACGCTCA 232911 36 100.0 30 .................................... AGAGCGATCTACCCGAATATCGTTCCAACG 232845 36 100.0 30 .................................... CAATGGACTACTCGACACGACTGACCGGGT 232779 36 100.0 30 .................................... GCTGCGGGGATTCGGCATGCGATCATCACC 232713 36 100.0 30 .................................... TTCACGCCCCGTATAAAGATTCCCTCGACG 232647 36 100.0 30 .................................... CAAGATCATGGGTGCCTACCATCGCGAGCA 232581 36 100.0 30 .................................... ACGAAGACGCATTTAGAAAACGCTTCACCG 232515 36 100.0 30 .................................... AGAATTTGAAGCTCTGGGTGTCGATCTCAA 232449 36 100.0 29 .................................... GCATGCTCGCATCGCAGCGGGACGGCCGA 232384 36 100.0 29 .................................... CGATTCCAACGACATCATGGTGCGACTCG 232319 36 100.0 30 .................................... GGATCGACCTCCGACCAGTCCGTGGCTGGT 232253 36 100.0 30 .................................... CGATCCATTGCATAAGCTACATGAAGCAAT 232187 36 100.0 31 .................................... CGACTCTGTTCGCTGTCGCTCGCATCACCGG 232120 36 100.0 30 .................................... GAGTACCCGCCCCACGTTCCGCCCCATCCA 232054 36 88.9 0 ............................G.A...TT | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 AGTGTATCTGACCTCAGCCTGCGACCAATCCGCAAC # Left flank : CGACCGAATTTGATGGTGAGCACGGCCCGCTGAACGTTGTGGTGCACCGCTACGTGAACCAGTTTGGCGCATGTTTGAGAGGTGAAACGAAAACGTTGGATTACCCAAAAAGGGCATCGTCGTGGAACTGAGTGGATATCGAAGCATGTGGACGATTGTCATGTTTGACCTACCGGTCGACACGCCAAAAGCACGAAAAGCCTACGCGTCGTTCCGCAAGGAACTACTACGTGACGGCTTTTTCAAGTTGCAGTACAGTGTCTACGCTCGCCCATCGCCGAGCAAAGAGATTGCGAATGTGCATATTGCTAGAATCGAACGCTGGTTACCCAACGCCGGCGAAGTCCGCATTTTCGAAATGACAGACAAGCAGTTCGAAGCAATGAAGATTTTTTGGGGCCAAAAACGTCAGCCACCCGAATCGACACCTCAACAACTTGAATTTTTCTAAACCCGAAAAATCCGTAAATCGTTTTACAAAAAGGTGTTACAGAAGAGGT # Right flank : ACTACGGATCGATAACGATCACCCGCCTTTCGAATTCGTCCAGGTTGAAGCAATACCCAGGAGCTACCGCCAAATAGAGAGCGGCTCTTTAAAAAATTAGATGACTCCCGTTTTGAACGCGATAACGGGACGCCCCCTTCCACTACCCAAGCAACGCAGTGCCATTCTGTTCAGAAGTTCGTTAACGTGCCCGCCGTAGCGTCGAAAACATTTCTGCACACCGAGGTGCAGAATGAAACAACAACGTTTAGATAGAGCCCCTGTGATGCGGCGGAAGATTCAAACTTGCATTGATCGTGAACGTGACTTTGGTGTTGAGAAATTGTCTCTTCTTGACCACCGATCGTAGCGGTGTGAACTTCAGCGGAAACGACGTCTTCGTACGTGTTTCCGGGCACGAAGAGGCGGAACTGATCGGCCACCTACGTTGATCTTCCATCTACATCCACCAGATTCGACGAGTCAGATTTGCTTGGGGGAAAGAACTCGCTCGATTGCTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTATCTGACCTCAGCCTGCGACCAATCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //