Array 1 986130-987987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051370.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM 24392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 986130 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 986191 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 986252 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 986313 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 986374 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 986435 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 986496 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 986557 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 986618 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 986679 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 986740 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 986801 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 986862 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 986923 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 986984 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 987045 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 987106 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 987167 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 987228 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 987289 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 987350 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 987411 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 987472 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 987533 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 987594 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 987655 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 987716 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 987777 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 987838 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 987899 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 987960 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1004669-1006408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051370.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM 24392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1004669 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 1004730 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 1004791 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 1004852 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 1004913 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 1004974 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 1005035 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 1005096 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 1005157 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 1005218 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 1005279 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 1005340 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 1005401 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 1005462 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 1005523 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 1005584 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 1005645 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 1005706 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 1005768 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 1005830 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 1005891 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 1005952 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1006013 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1006074 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 1006135 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1006196 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1006257 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 1006318 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 1006379 29 100.0 0 ............................. | A [1006406] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //