Array 1 79589-79822 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000002.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 79589 33 100.0 33 ................................. CCCGCCTACCAACGGGACGTCATACAGGCAATC 79655 33 100.0 36 ................................. TGTTACAAATTGGCGGCGGAGTCCGGCCGAGTAACC 79724 33 100.0 33 ................................. TCCGACAGGGCCCAGTGCGGGCCCATCCGGACC 79790 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 34 GTCGCACCCTGTATGGGGTGCGTGGATTGAAAT # Left flank : TGAATTTACATAGCGTTAATTTTTTGTTAACACGGCGTTGACAGTTGGGTATTCGGGCTTGGAACGAGGGCCTGAGGGCACTCCGCGAGTGCTTGGACTTCCGGTCGCTGTTGTTTTTGAATTTCCGGGATTGGAATGGGCTGCGGGTGAAATTCAAAAACAAAGGCGAACGCTGCCGCTCCTCCAGTTCCAAGCCCTTCTCTCCGTGCCTTCGGCCCTCCTGAGGGGCATAGCAGCGACAGCTCTTGGAACGAACGCTGCCGCTACAAAAAATGGCCGGCCAAGTTAACTTGGCCAGCCGCTGAAAAGAAACCGCTTGGTGCGAACCCCAAGCTCCCATGAAATCCCCGGGTCCTTCGCACCTCGGATTTTGGCGAATCCCGTCGATTTACTCTCGTTCTCGAAAATGTCAATCCATAACAGTTGCTTTTTTGATATGCTGAAGAGGAGAAAGTGCGCTAAGGCATCTCCCGCCGAGATGATTTAGGGTAGTTATCGCT # Right flank : AGCCGCTTATA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTATGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 94760-96888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000012.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 94760 33 97.0 36 ............G.................... CGATTTTGTGCGAAAGTCCCCCGAAGACTGGAGCGC 94829 33 100.0 36 ................................. CTCGGCCAAGTCCGGGAGATCGGCCGCAAGTCACAG 94898 33 100.0 33 ................................. AACGAGATTATGCGCCGATGGGACACGCTGGAC 94964 33 100.0 34 ................................. TAGCAGCGGTACCGGCTTTTGGTTGGCGTGGATG 95031 33 100.0 34 ................................. ACCCATGTCCAATTTAAAGGACATCTTATCTCCC 95098 33 100.0 36 ................................. GTTCGGGCTGCTAGGTATGTAGGATTGAGTCATATC 95167 33 100.0 35 ................................. TTGGTGTTGCCGCTTCTCGCTTCGCGGAGGTGGTT 95235 33 100.0 34 ................................. CTCGCCACTGCCCGGGAGTCTGGATTGGAACGAG 95302 33 100.0 35 ................................. GGTTAATAGCTATATTTAAACGGCCTCGTAGCCGG 95370 33 100.0 35 ................................. CATCCAAAGAGTTGCAGATATTTTGGGGCATGCTA 95438 33 100.0 34 ................................. GCTGATTTTAAGGAGTTGCCGGAGCCGGGAGACC 95505 33 100.0 34 ................................. TTCCGATAGTTTTCGTTGACTTTTTCCAAGCCCA 95572 33 100.0 35 ................................. CCCGTGATGCCCTTAATTAGGGCGAACAGTCCGGA 95640 33 100.0 34 ................................. GTCCAGAGCGAGAAGGTCGGCAAGGTATCACCGG 95707 33 100.0 34 ................................. GTGAGGAGATGGAAAGACGCAATGTGACTGTTAG 95774 33 100.0 36 ................................. ATCCACGCGAACCCGCAGGCGCTGGAAGTAGAGCGC 95843 33 100.0 33 ................................. GATGCCGACTTTCCGAATGAGTGCATACGGTCC 95909 33 100.0 33 ................................. GTGGTTGCTGCATCGCGTCCCGGAAGTTTTGCA 95975 33 100.0 35 ................................. GGGTCCGTGGCGTATCCGCACTGATAGACGGCGGC 96043 33 97.0 35 ............G.................... TTGAGTGGCGCGACCGTGGAGGCCGTGAGTGACTA 96111 33 97.0 36 ............G.................... GCGGATGACCAAGCGGCAAGCTACCTGCGGGAGACG 96180 33 97.0 34 ............G.................... CAGAGCCCTCAGCGTGCGCAGCTGTGCCGAAAAC 96247 33 100.0 35 ................................. TTGCCGATATTAAGGCTCCGAACGGACAGGATGCG 96315 33 97.0 38 ....................T............ ATAAAGTTGTCCAGTTGAATGTCCAGTACAGTGTCCAG 96386 33 100.0 34 ................................. TTTGAGTCCCTGGGAGACACGGATCGTAGTATCC 96453 33 100.0 33 ................................. ATTGCAGCATTCGGTGAGATGATCGTTTCCGGA 96519 33 100.0 35 ................................. GGAAACGCAGCGGGAAGCTCGTCCGGTAGCGGCGC 96587 33 97.0 35 .....................A........... GACGCGGTGCGGAACCGAGACCTCCAGAATGATCC 96655 33 100.0 35 ................................. GATGCCCGAAAACTATTCCATGATGACGGTAAGCC 96723 33 100.0 33 ................................. CACCGGAAGCCCCGAGCGATGCGGGGAGTTGTG 96789 33 100.0 34 ................................. ATCTGGCATCGCTCCTTATGTTATAATCGAGAAA 96856 33 97.0 0 ........T........................ | ========== ====== ====== ====== ================================= ====================================== ================== 32 33 99.3 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CGTGACGAAGGAGACGCTCGCTTTTGAGAAAGGGACCGTCGTCATCCCCGCCTATCTCGCCAAAGGAATCGAGTTCGACGCCGTGCTGATCTACAACGCTTCTCCGGCCGTGTACGGGCGCGAGAGCGAGCGCAAGCTGTTCTATACAGCCTGCACGCGCGCGATGCACCGGCTGCTGCTGTATATGGACGGAGGCTGGACCCCTTTGCTGGATGGGGTGAGTGCGGAGTTGTATGAGAGCCGCTGAATGGAGGGGCAGGCCCTTGCAAAGGGCCTTGCTCTCCTCTCTCAATCGTACCAGGCGAACCAGGCTCGCCTGGTGCGAACCCCAAGCTCCCATGAAATCCCCGGGTCCTTCGCACCTCGGATTTGCCCGAACTTTGTCGACTGCAAGTTATTCTCTAATTTGTCAACCGGGCGCACAGATTTGTTTGATATGATAGGGGGAGAAAAAGCTCCGAATTGATGCTTCGGGTGAATCAATCGGCTGGTTTTTCGCT # Right flank : TTCATCCTTGAAACACATCCTCCGTGACAGGTTGCCCTACATATAGAGGGCATAAATGGAATCGTGATATGATGAATCTAAAACCGAAGGTACAAGTGATTCGGCTTTATTTTATAAGATGGCAGTACAGAGTAATACACGGGAGTCAGCCGGACGATAACCAGATGCCGAAGGAGGGATCTAATGAAAAGAATCAACCAGCTCGAGCATGAAGCGCCGGGTTCCGTCAACTTGAGTCCTGCTCAGATCGAGGCCATCATACGGATTCTCAACGAGACAGTGGCTCCCGCATCCATCATGCTCTTCGGCTCGGCGGCCAAGGGGACGTTTCGTCCGGACAGCGATCTGGATTTGGCGTATATCCCCCACAGACATCGGCCCGGGGCCTATGAACGGTTTCAAATTGCCGCAACACTCGCGGATGTGGTGGGGCGGGAAGTAGATCTGGTTGATTTTGAACAGGCGAGTCCGGTCTTTCGCGTACAGATCATTGACGGCGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 98107-100708 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000012.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 98107 33 100.0 34 ................................. CATCCCCTCGGAAGCCTTTGCCAGCGCGATCTTC 98174 33 100.0 34 ................................. GTTTAATGTTCTTGACCAGCACTTTGTGCTGTGC 98241 33 100.0 35 ................................. GTATGCCAAGTTACCATCTCCGCAAGATATTTTGC 98309 33 100.0 36 ................................. GCATCCTCTGTGGCGGATAGCCTCGGCTAATGGCCC 98378 33 100.0 36 ................................. AAAATCGTTTCCCGCTCCCATATCGGTCCGCTCGAA 98447 33 100.0 34 ................................. CTACTCCCTATTTTACACTGATGTAAGCTATTTT 98514 33 100.0 35 ................................. ATCATCCTTTGATATTCCCGATAAATCCGGCTCGT 98582 33 100.0 34 ................................. CTTCGCCGGAATCCTGCTATGAGCCAGCGCCAGG 98649 33 100.0 35 ................................. CTTCGCCGGAATCCTGCTATGAGCCAGCGCCAGGC 98717 33 100.0 36 ................................. CCGGAGGTCAGGTCCCCGCCAGATGAAAGGTCAAGG 98786 33 100.0 35 ................................. TTTGACGATAGTTGTATAAATTTCTTTGAGTTTCG 98854 33 100.0 36 ................................. GCTTTTACTGATTTTTTTAGGAACCAGTTTGATTTC 98923 33 100.0 35 ................................. AGCGCATAAGGGATGGCGACCGTGTACCAGTCGCC 98991 33 100.0 36 ................................. CTGGGCCGCCCGCTGCTGGTCGGCGGCATAGTCCAG 99060 33 100.0 33 ................................. GGACAAATCGGCTGCTGAGCCGTCAGCGCGAAC 99126 33 100.0 33 ................................. ATGTTCGAGCAAATTTTGCAGCAATCGCCGGGA 99192 33 100.0 35 ................................. ATAGCGGGCGGTCTGCCTTGGTTGATAATCGGCGC 99260 33 100.0 33 ................................. AACGGAATTGAGGCTAGCAGCTGCTATAGAAAT 99326 33 100.0 35 ................................. AGCCGGTGGTGAAACTCCACCTTGCCGGAGACGCG 99394 33 100.0 33 ................................. AAGAAATCCGATATCATCAACTAGTCCCTTTTT 99460 33 100.0 34 ................................. TGTGCCAGTCTCCATAGGCCGCAACGCGCTCTTT 99527 33 100.0 36 ................................. TTTGCCCGATGATCAGCTCGAGCGCCTGAAGGACTT 99596 33 100.0 35 ................................. CGGGAAGCGGTGCAGGCCGGTGTGGACGAGCGGCT 99664 33 97.0 33 .........A....................... CGCGGCACATAGCCGATTCGGAGGTCTACCAGC 99730 33 100.0 35 ................................. AGACAAGTAATATGGCGATTGAGATCAATACGATG 99798 33 100.0 36 ................................. CGTTTTCGTGATTTTAGCCAGCACTGCCGCAAGCTG 99867 33 100.0 34 ................................. TACATATTGATCAAATTCAGGCTTTCGCACGGAA 99934 33 97.0 33 ...............A................. CGCCGACGGATTGCTTGTTGACGCGGGTAATCA 100000 33 100.0 33 ................................. CGCCTGCTGATTGGGCTTGGTGCTCTCCGGCGC 100066 33 100.0 34 ................................. TATTTTGAGAGGATGGAGAAGACGGAATGACCCA 100133 33 100.0 34 ................................. CGCGCTGGGGCATCAATGAAGGTGACCTTGGCGG 100200 33 100.0 35 ................................. CATTGCCGGAATATTTGGCTTGGATCATATCGGCC 100268 33 100.0 34 ................................. TGGGCAAGACCCAGTATAAGGACGTGCCCAAGAC 100335 33 100.0 37 ................................. GGCGGTAATACGTATGCCTGGTATGCGCGGTCCGGTC 100405 33 100.0 34 ................................. CCAATACGCCGTGGGAATCCCTTCGGGTAGAAGA 100472 33 100.0 37 ................................. GTAGTATTATTTTTAGGTAATCCTAAAAGTCTTGCCT 100542 33 100.0 34 ................................. TTCGCATCCTTGGTGCTCTTGGTAAACTCGGCTG 100609 33 97.0 34 .......................A......... ACACGCATACGCTGCCGTGCGCCCTCGCCACCTC 100676 33 87.9 0 ........................T.A.AG... | ========== ====== ====== ====== ================================= ===================================== ================== 39 33 99.5 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : CACCATTACACGAAGCAGGACTCTATCATCCTGAACTTGCAAAGATGCTGTGAAGCTTGCATCGATCTGGCGATGCATACGGTGGCGGAGCTTGGAACGGGTGTGCCGCAGGCCAGCCGGGAAGCTTTTGACATCCTGCTGCAAGAAGGAGTGATTCCCGAGGAATTGGCTCGCAATCTTAAGGCGATGGTTGGCTTCCGTAATATTGCCGTTCACGATTACCAGGCCGTTCAGTTGGACATTCTTAAGGCGATTTTAGAAGAGCATTTGACGGATTTCACGGAGTTTGCGGCGATTCTAAAAGCACAAGCGTCGTTTGGTGCGAACCCCAAGCTCCCATGAAATTCCCGGGTCCTTCGCACCTCGAAATTCGACGAATTCTGTCGAACCCGAGCTGTTCTTTAATTTGTCAATAGAGCACACAGATTTATTTGATATGATAGTCGCAGGAAAAGCACCGGATTGATGCTTCGCGGGGATCAATCGGCTGGTTTTTCGCT # Right flank : TAGCTTCGTCATATTTGCACATTTTTTCACAACTAATGACTTTCAAATACATATCCTTACAAGGAAATTATTCTCTAGTAGAGAAGTTATTAATTAAAAGATTTCTGGAGGAGGAAAAGCTTGGCTACCCTCAATCAGTTTCAATTTCTCCATTTCAGGGCGCTGTTCACTGCGCGCGAGGCGGGTCAACTGCCGCCATATTTGGGTTCAACTCTTCGAGGAGTGTTGGGACATGCCATGCGTGGGCTGGTGTGCAGCCGTCCAGGACTGCGCTGTCATCTATGCGAACTTGCCGTAGATTGTCCGTATGCACATAGTTTTAATTCCCCAGGCAATGAGGGAGGCGCTGTAAATCCATGGGTACTTTATGTACCGACGCGGGATAAGACAAGCTGGCAGATTGGCGATTCGCTGATCTTCGAGCTCGCAGTAGTTGGAAGTGCTACTGGACAAGGACAGTTTTACCTCGACGGTATTCGTCATATGGAGCGGTTCGGCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 141758-139421 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000012.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 141757 33 100.0 37 ................................. TCATTACTACCCGTATCGCTGGTGGACGCGCTTTGTC 141687 33 100.0 36 ................................. CACCAGCGGGACCACTTTAAGATTGGTCAGCGCCGC 141618 33 100.0 34 ................................. TTCTTCGCCCACCACTTGCTGGTGGCAAGAGCGT 141551 33 100.0 33 ................................. ACAACAGAATTTACGGATAACCTAAACGAATTT 141485 33 100.0 34 ................................. TACTCACCGGAGGCTCGACGCCGGCCGCCGTCCA 141418 33 100.0 36 ................................. CCATTGCCCCGTCGCCGCCTCGGTCTGCAGTGTGAC 141349 33 100.0 35 ................................. GATCACCTCACAATCGGATAAGAGCGGCCACCGCC 141281 33 100.0 36 ................................. ACTTATGATGGCCGCCTATTTTTTTATCCCGCTCTC 141212 33 100.0 34 ................................. CGAGAACGCGTCCAAGAGGATGTTGTAGAAAGAC 141145 33 100.0 35 ................................. TCCAGCAGGAGATCGAGAGCCTGAACGATGCCGTC 141077 33 100.0 35 ................................. CTTCCGGATCCATTGTTGCCACTCCTGCTGATGAA 141009 33 100.0 34 ................................. GACGCCCGCCTGGAGCATGAAATCAAGCGCATGC 140942 33 100.0 35 ................................. CTTTTCCCGGCCGCCAGTGATCGGAGTCGGATTGG 140874 33 100.0 35 ................................. GTCCAATATTTGAGTGGTCCGAACAGATAGTATTC 140806 33 100.0 33 ................................. CCCGGTTCAAAAAAAAATTTTGGAAGAGAGGTC 140740 33 100.0 35 ................................. TCGATAGCCCCCGGAACATACCCTTCGGCCTTGGT 140672 33 100.0 33 ................................. TACTCGGCCGCCGGTCTTGTGGCTACTATTGAC 140606 33 100.0 36 ................................. CTGCCAGTTGGTCACCATCTCGTCATAGAGCAAATT 140537 33 100.0 36 ................................. GGGCCAGTCGCTGATAGGAATAAGCACGGTGATCCA 140468 33 100.0 35 ................................. TAAACATCAAAAGCCGAGGGCCATAGCTACTAGGC 140400 33 100.0 33 ................................. CAGACGTTGCGCTAGGGGTGGGAGAGGCTGAAA 140334 33 100.0 35 ................................. GCTGAACCTCTTGGGCCAGCGGCAAATATGATCGC 140266 33 100.0 34 ................................. CACTTTTTGAAAATGGAAGAGCAGAGCCTTCGGC 140199 33 100.0 34 ................................. TTGACGTGCTGCTGGACCCGACACACCGCATGGC 140132 33 100.0 34 ................................. TCCGTCCCGAACAAATGGGTAGTAGCAGCCAGCA 140065 33 100.0 35 ................................. GGGTTAGCCTGGCCGTTGGAGCTGTCGAACTGGCC 139997 33 100.0 35 ................................. CGGTCCTCCGGCAAGTACATATATTGTCCGGACGA 139929 33 100.0 33 ................................. AGTTTATCACAGCTCCGCAGCAAGTGCAGGGAA 139863 33 100.0 35 ................................. AAAGTCCATCGCCTTGCTCACCGAGCTACCGGCCA 139795 33 100.0 33 ................................. ACGTCGTCCCTCGGCTTTATCGTCGGGTTTCTC 139729 33 100.0 37 ................................. CGGCGGGCCACTACGAGACGACGCTGACCACGCCGGA 139659 33 100.0 36 ................................. ACCCTTCGGCCCCATCGGCCCTTGCGGACCTGTGTC 139590 33 97.0 34 ..........................A...... AGCTCGTCCGGCAACTCGTCCAGAAAGAGCTTGC 139523 33 100.0 37 ................................. GACAAGCTGCACAGCTCCTGGGAAGTCAAGACGGCCA 139453 33 90.9 0 .............A.................CC | ========== ====== ====== ====== ================================= ===================================== ================== 35 33 99.7 35 GTCGCATCCCGTATGGGATGCGTGGATTGAAAT # Left flank : ATCAATAATCAGCGCGATATTGTACCCCTTTTGCCGGGCCAGCTGCGTAGCCAGACTGCTCGGTTCATAGTTCATCTCCTGCATAATGGCTCGAACTTTGGCTTTGGTCGCTTCCGAAATCGTCGGAGCGTCATTCAGCACTTTGGATACTGTTGACTTCGCCACATTTGCCGCGCGGGCAATATCATTGATGGTCACTTTCATCGCACCCAGCCCTTTTACACGAATGCCAAAATTGTCAATTTCTATTATAACGCTTACAAGCTGCCGTTTGAAGGGCTGTTCTTCCACCCCTGCCTAAGAGGCAAAAGAAAACTTGGTGCGAACCCCAAGCTCCCATGAATTCCCCGGCTCATTCGCACCTCAGATTTTGACGAATCTTGTCGTTTTTGTCTTGTTCCCGAAAATGTCAAGCTCACATGCAGATTTATTTGCTATGCTTAACATAGAAAAAAGCGATTCTCTCTGCCTTATTGAAATGAATGGACGCTAATTTCGCT # Right flank : ATTCCAATCAACCTCTTCCGCCTCATCACAGCACGCAAAAACGCGCGAACTCCCCGGCCACAAGGGCCGGGAAAGTCCACGCGTTTTCAATTTCGGCGGCGGGAAGGCCGCCGGGGAACCGGCAGAAGCCGGTCCGCCGGGCAGGCTTGCTCCCTTTTGCCGGATTAGTTCTGCCAGTCTACGGTTACGGTGGCTACGCCGCTGGACGGCGATGTGAAGGTGTGGTTGTTGCCGCCTTCCCAGGTAACAGTAGATCCGTTAACCTTGATGAATTTGAATTGCAGCGCCGTGCTGGCCGGAACGCTGACGTCGAAGTACCAAGTCGGGTAGGAAGCTTCCACCTGGTTGTACAGCGGGCCAATGGCCTTGGCTGCGGTCCAGTTGCCGAGTTCGGCCACGTTGCCGGTCAGGTAGACGTTCTGGCCCAGGGACGTAGTGGCATTGTTCACTTTGAAGCGAACGGTAACCTGATCGGCGGTCAGCACGTTGAAGTTATTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 151404-155073 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000012.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 151404 33 100.0 36 ................................. CAGCTTATGAGGGGACAGGCATCCAGGCGCGCCACG 151473 33 100.0 34 ................................. TAAGCCTCCTGCTGCGGCCGATCTTTGTCGTTGT 151540 33 100.0 34 ................................. AGCGCCAAGCAGAGGAAATTGATCCGGAAAAGCT 151607 33 100.0 35 ................................. CCTACGAGGTTTATGAGTCGCTTACAGTCCTCCCC 151675 33 100.0 36 ................................. TTTAGGAGCCTGAAGAACAGGTAAATGGCTCCTCCT 151744 33 100.0 36 ................................. CAACACCTCATGGCGCTGCGGGACTCGGTCCCCAGT 151813 33 100.0 34 ................................. GGCTTAGTCATTTTTATAATCCTCCCAGGGAACT 151880 33 100.0 35 ................................. AAGTTTATCCTTGAACATCCCCAGATGCCGAGCCA 151948 33 100.0 34 ................................. GTCCATCGTGCCCTCGGCCACCAGCCGGATGACC 152015 33 100.0 36 ................................. TCGTCATAGTTGCATGGGCCGCTGTAAAGCTCTGTC 152084 33 100.0 33 ................................. CCACGGGGTCGCCAAAAAGCCGGGCCGATGGGA 152150 33 100.0 33 ................................. CTTTTCCCGGCCGCCAGTGATCGGAGTCGGATT 152216 33 100.0 34 ................................. AAATGATTGGCTCACTCCTGAAGAATTCGGAGAC 152283 33 100.0 35 ................................. GGTCGGGCGAACATGCGCTATTCTGACGCCTAAGT 152351 33 100.0 33 ................................. AGGTGAGTGATCCGCCCGTAGGCTTCACGCCAT 152417 33 100.0 34 ................................. ACCCGGGCGAAGGTCAGCATGCTGGACGCCAAGA 152484 33 100.0 35 ................................. AGGCGGAAGCCGGCGCTGCCCGAACGGAAGTCCTC 152552 33 100.0 33 ................................. GTCCTGGAGGGCGGTAAGCTTACGCTCGTCGGC 152618 33 100.0 36 ................................. CCTTTATACCCTCGCCCGATCCGGGCGGAAAGGCGG 152687 33 100.0 37 ................................. CGCGCGGTAGCGCTGCCCCGGCTGCGGCAGCCGGATG 152757 33 100.0 33 ................................. CTTCATGGCCGTGAAGATGACTCGGTGGATCGG 152823 33 100.0 36 ................................. GCCGCTTGCGCTTGGTTGAATACGTCCATGCCGAAC 152892 33 100.0 35 ................................. CGAATGTTTTCGTTTCTGGCGAAACTGCTGGGCTA 152960 33 100.0 34 ................................. CGGCGGGAACGAAGGGAACATCTTGCCCGGCGTC 153027 33 100.0 34 ................................. GCCCAAATGTTGACATTGATTCCACGGAGGGGGG 153094 33 100.0 35 ................................. ATTCGGACCCAAGAAGAATCCGGTTTCAAAGCTGA 153162 33 100.0 33 ................................. CGGTGTCACCCACTACTCTCCTATCAACCTACC 153228 33 100.0 36 ................................. TCACGGCTGTTCGGGCATTCCTGGTCGATCAGGTAC 153297 33 100.0 33 ................................. GTACTGGTTACAGCTACCATTGATACCCAGGAC 153363 33 100.0 35 ................................. CATGTATGCCAAAAAGGAGGATCAGCCATGATCTA 153431 33 100.0 34 ................................. TTGTGGGCATAAGCCCACTGGTAAAACACGTCAT 153498 33 100.0 32 ................................. GATCAGAAAGGCCGCTGTTTATTGACTGCTCC 153563 33 100.0 34 ................................. GGGTGGATACATAAGCAAGCCCCTGCTCATTGTA 153630 33 100.0 34 ................................. TGTGCCCCCGTGTTACAGAGACCGGGGGCTATGC 153697 33 100.0 35 ................................. ATGGGTTTCGCAAACGTATACGTCCTGCCGCCTTT 153765 33 100.0 34 ................................. GCGTCCGCCAGTGATCGGTGCTGGGTTGGTGACC 153832 33 100.0 33 ................................. TGGGCGGAGACGCGACCCATGTACATATGCGCG 153898 33 93.9 33 .........T...........A........... TAGTTATCCATATCAATCGACCGAAGGAATCAC 153964 33 100.0 34 ................................. TTCGAGCGCCTGCTTGGTCGGGCGCTCGACTTTG 154031 33 100.0 36 ................................. AAGGTCCAATGGCATACCAGCTTCCTCAATCTGCTT 154100 33 100.0 34 ................................. ACCGGTGATGCGTGTAAAGTCGATGCCGAAATCC 154167 33 100.0 36 ................................. GCGGTTGAGCATCAGGTCGAGGACATGTCTACCCGG 154236 33 100.0 33 ................................. GCCCGGGGCAATCGGGTTGTAAGCAGCTTAGGG 154302 33 100.0 32 ................................. AGTCGATGAAGGTCTTGAAGGCTCCCATCGGA 154367 33 100.0 35 ................................. ACGCCCACGGAGATCATCCTGGGGCTGATTAGCGA 154435 33 100.0 33 ................................. TCGGCAGCCTCGGCCTCCTCTGCGGTCAATTTC 154501 33 100.0 34 ................................. TCCACCGCCGTATTGATCCGCTCTACCCACGCAT 154568 33 100.0 37 ................................. TGGGAGGGCTTAATGATGGAACATCACGAAGAGACAG 154638 33 100.0 34 ................................. AGCTCATGATGCAGCAGCTCACCAATTTCACGTC 154705 33 100.0 34 ................................. TGGCGACGTCCGAAGAGGTAAACGGCAAGCTCGT 154772 33 100.0 33 ................................. ATGGAAATGAAGAGGGTTCTGGAGTATTCCAGC 154838 33 100.0 35 ................................. GGCCCGGCCCCGTGGAACCCGGGCATCCCGGTGAC 154906 33 100.0 35 ................................. CCGTCGACCGGAAAAAGATGGCCGAAGTGTGCAGC 154974 33 100.0 34 ................................. CTTGTACCGCTTCCTGTGCTCCCGCTCCCGAATC 155041 33 93.9 0 C.......................A........ | ========== ====== ====== ====== ================================= ===================================== ================== 55 33 99.8 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : TGGAAGTAGGTGAACGGCGTGCTTGTCTTAATCACTTACGATGTGAGCACGAAGAGTTCTGAGGGGCGTAGACGCCTGTCTCAGGTATCCAAGAAATGCCTCAGTTACGGACAGCGTGTTCAGAACTCCGTGTTTGAATGTATCGTGGACGCTACGGAATTTCGTAGATTGAAATATGAATTGGAAGAACTGATAAATGAAGAAACAGATAGTCTGCGCTTCTATAACCTTGGGGACAAGCACAAAACCAAGGTAGAACATTTTGGCGCCAAGAGCAGTTATGATATGGAAGGGCCTTTGATCTTGTAAAGATAGCTTGGTGCGAATGCCAAGCTCCCATGTTTTCCGCAGGTCCTTCGCACCTCAGAAATTGCAGAATATTGTCGAATATGATCTGTTTCTTGAAATGTCAAGGCAATGATTATACTTATCTGATATACTTTCTAGCGAAAAGGAAGCTAAACGTTCTATAAATTTGATCAATTTGGCTGTTTTTCGCT # Right flank : TCTCGCGGTAGGATAATTCGCCTATATAACAGTTCGCATATATAACAGTTCACGCATACAACAGATTGATTCGAGAAATTTTCGAGCCAACACAAACCAAGGGCAGCGCATCGCGCTGCCCTTTTCCTATCCGGCCGTTCCGTTCAGCTTCACTCCTCGCGGGGCTTGCCTGCGGGCGGCGGGGAGGCTGCTTCCGCCTTCTTCCGCGCCCGAAAGCGGCGGACCTTGAGGAGATTGCCGCAGGTTTTGTCCTCGCAGTACCGCTTGGAGCGGTTGCGGGTATCGTCGTAATAGACCCACTGGCAGTCCGGGTTCTCGCAGACTCCGAAGCGGGAAGGGTCCCCGGTTGTCACCGCTTCGGCCAAAGAGGCGGCGATCTCGGCCCGGACTTGGGCCCAATCGTCCCGCAGCGGCTCGGAGACAAGCTCCAGCCGGCCTTCCGGGTCGGCGGCAATCCGTCGCAGTGCGGGGCCAAGCGCCATCTCCCGGTTCAGTAGCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 224724-222668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYKK01000012.1 Paenibacillus spiritus strain MER_111 ME-111_1_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 224723 33 100.0 33 ................................. CACCGGTATACGTACCTTGGTCTGGATTTTTAA 224657 33 100.0 34 ................................. ACCCGTACGCCATTTTGTTTCTTCCAAATGCAGA 224590 33 100.0 33 ................................. TTGGCGGAGACGGTAAGGGGCGGCGGGGACTTA 224524 33 100.0 34 ................................. CACGTAGCTGAGATTCCGCTTGCCCGAAACGACC 224457 33 100.0 35 ................................. ATATATCACGTAGGTGCCCCCGACTATCGGACCCC 224389 33 100.0 34 ................................. TCGCTCCGCTTATCCTCTGTCATTAGGAGTCACA 224322 33 100.0 35 ................................. AAATCGCTGAACAAGCCGATCACCGTTAGTGACAT 224254 33 100.0 33 ................................. AGAAAAAAGGATTTTCGTAGCTACCAAAACAAG 224188 33 100.0 35 ................................. AGGCGGAAGCCGGCGCTGCCCGAACGGAAGTCCTC 224120 33 100.0 35 ................................. CGGAACTTCGTCCCACGTCCCGGCACCGAGAAGAT 224052 33 100.0 34 ................................. CGCTGTTAATTTATCGATTTTTGCCATGTTTATG 223985 33 100.0 35 ................................. TCGGACAATACACTAAGCGGCATCCACGGATCGGC 223917 33 100.0 34 ................................. AGGGTCAGGCGGTACTTTTGCAGCGTCACCGGCG 223850 33 100.0 35 ................................. TTCAGACACATATCGGAACTCCGGTGAACCCGCGC 223782 33 100.0 34 ................................. CGTGTGCTGGACAACAACCAGGAACACAGCATCA 223715 33 100.0 34 ................................. GAGCAGCGACGCCATATGGACTGGTCCGCCGCCC 223648 33 100.0 36 ................................. TTTTCGGCGGAGCGGGACATGGTGACGGCCTACATG 223579 33 100.0 34 ................................. TCACTTCTCCTTGGAGCACGTCAAGGACTTCTTG 223512 33 100.0 33 ................................. CGAGCGTGATTAAACGCTCTCCGGTCTCTCGTC 223446 33 100.0 38 ................................. CCGTGTTAAGCGAGGCATTGACGGACTGGGCGGAAGGG 223375 33 100.0 33 ................................. CATCAGATTTGCGACAAGTGTTTTGCACTTGGC 223309 33 100.0 35 ................................. AAATTTGGCGTATAATGTATATAACAATCTGACTC 223241 33 100.0 34 ................................. CGCCCAGCTTACCCAGGTCGCCGACCACTCCGCC 223174 33 100.0 35 ................................. AACCCGATTGCCCCGGGCGAAACAGGCGCGCGCTA 223106 33 100.0 34 ................................. TTGCTTACAAGGGGGCGGCGCTGATGGACTTCGT 223039 33 97.0 34 ...........C..................... CAGATGATGCGTAAAAGTATTCATATTCTAGCCC 222972 33 97.0 34 ...........C..................... TTTTCGTTCGGAGAACAATACGTCATAGTACTTG 222905 33 90.9 35 ...........C...........AA........ CTGCTCTTCGACCGGGGTTTCCCGGGTGTTATCTT T [222891] 222836 33 97.0 34 ...........C..................... TCGACCTCGGCCAGATGCGCCGTCTCCTTGATGC 222769 33 97.0 36 ...........C..................... CGTTATTCGGCGTCATGGCCCGGGGCGACGGTCGGC 222700 33 90.9 0 .....C........C.........C........ | ========== ====== ====== ====== ================================= ====================================== ================== 31 33 99.0 34 GTCGCACCCTGTATGGGGTGCGTGGATTGAAAT # Left flank : CGGCAAGGATGC # Right flank : CCCTTTGTCAAGTTCCCGTCGAATGGTCTTTAACAAGTCGCGTCCCGTACGGACTTCGTGCTTTGACTAATAAGAAGGTTCATTTTACAAAGTAAGAGGAGGACGTCCTCATGAAGCTCTTAAAATTCGGACTGGCTGCTGTACTAGCGAGCACTTTATCTTGGTTTCCCTCCAATTCTTCTTTTGCTGCGCCTGCTGCAACCACTAAATCCCCGGTGTTATTGCAGATCAACGATTATGCCGTTATCTACACATATCCCAAAGCCCCTTATCTGGATCGCCAACAACGGCTGATTGTCCCCCTCCGCGCGGTAAGTGAATTACTGGGGGCATCGGTAACGTATGACGCGGAACTGAAGCAGGCGACAATCCGAAAGAATGGAAAAGAGCTTATTTTAACCGCGAAATCGAACCAAATTCTTGTCGATCATGTACCCAAGACGATGGATACGGTTCCGACTATAGACCAGCAGTCTTTCCTGCTCCCTGTTCGTGTACTG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTATGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //