Array 1 33015-34323 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBOY01000028.1 Salmonella enterica subsp. enterica strain NY_FSL P3-1548 NODE_28_length_63839_cov_18.3617_ID_5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33015 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 33076 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 33137 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 33198 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33259 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33320 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 33381 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 33442 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 33503 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33564 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 33625 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 33686 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 33747 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 33808 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 33869 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 33930 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 33991 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 34052 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 34113 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 34174 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 34235 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34296 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51030-52523 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBOY01000028.1 Salmonella enterica subsp. enterica strain NY_FSL P3-1548 NODE_28_length_63839_cov_18.3617_ID_5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51030 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 51091 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 51152 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 51213 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 51274 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 51335 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 51396 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 51457 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 51518 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 51579 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 51640 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 51701 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 51762 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 51823 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 51884 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 51945 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 52006 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 52067 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 52128 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 52189 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 52250 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 52311 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 52372 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 52433 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 52494 29 93.1 0 A...........T................ | A [52520] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //