Array 1 29057-27153 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXK01000049.1 Salmonella enterica isolate STY3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29056 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 28995 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 28934 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 28873 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 28812 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 28751 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 28689 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 28628 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 28567 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 28506 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 28445 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 28384 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 28323 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28262 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28201 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28140 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28079 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28018 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 27957 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 27896 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 27834 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 27731 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 27670 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 27609 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 27548 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 27487 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 27426 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27365 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 27304 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27243 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27182 29 96.6 0 A............................ | A [27155] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5403-6895 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXK01000104.1 Salmonella enterica isolate STY3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5403 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5464 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5525 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5586 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5647 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5708 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5769 29 100.0 31 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCC 5830 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5891 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5952 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6013 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6074 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6135 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6196 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6257 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6318 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6380 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6441 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6502 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6563 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6624 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6685 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6746 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6807 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6868 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //