Array 1 3-459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULR01000075.1 Clostridium sp. OM04-12AA OM04-12AA.Scaf75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 82.8 33 ......................GTG.A.C TATGTCTCTAATGACTGGTACAAGGACGGAGAA 65 29 100.0 32 ............................. GTGCCTGCAGGAACATAGCTGGAACGCTCTCT 126 29 100.0 32 ............................. ACAAGATCGGGAAATTTCAACAGCGTGCAGGA 187 29 96.6 32 .....................A....... GATATCAGCAGATTTAAGAATACCGGGGACAA 248 29 93.1 32 .....................A......C AGGCGGGCGGCAAGTTCTTTTGCACATGCTTC 309 29 96.6 32 ............................C AAGTTAAGCCCAATCGACGTAATCACGCCGTC 370 29 100.0 32 ............................. GGCATAAGCCGGGAACATGCCCATAGGGGACT 431 29 86.2 0 ...........A..T......A......C | ========== ====== ====== ====== ============================= ================================= ================== 8 29 94.4 32 GTATTCCCCGCGTGAGCGGGGGTGAACCT # Left flank : AAG # Right flank : CCATATCATGAAGGTGTACAGAGTCCGCAAGCCGTATTCCCCACATAAACAAAGCAACATCTAATTGCCCAGTCTGTAAAATTTAAGCATTTCTTATGTGCAGATGCTCTTTGTAAAAGCAGCATTAATCTCTTGACAAACCAACTCAATATTGTTAGTGTATGGGTAGACAAAAGAGAAGCTTATCTATAGTCCTTGCGTACGCAGGGATGCTCCCTGATTAAATTCCAGAGATATAGTATTCCCCGCATCCGCGGGGCTAAAATCAACAAAAAAAAGCAAAGTCTACAAAGTTGTATCTCTATCCAGCCTTGACGCCCCCAGCCTGCTGTGATAAAATCAATTTAGTGTTTTAGGAGAAGTGGCGAGAAAATCTGCCGTGAATGTGCGAGCTGCCAAGCCTTTAATAAGGCCGGCAGCTCTTTTGGCATTGTTATGCATCCTATGAAAATTGCCAGGGGATATGTATGGGAGAAAACGGACAGAAGAAAGTAATTGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGAGCGGGGGTGAACCT # Alternate repeat : GTATTCCCCGCGTGAGCGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 4352-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULR01000044.1 Clostridium sp. OM04-12AA OM04-12AA.Scaf44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4351 29 100.0 32 ............................. TAGCTGAACAAATAGAAAAATTAAAAGGTGTT 4290 29 96.6 32 ............................C CTTGCCTATAAAGCGTTTAAAGACAGTTTAAA 4229 29 100.0 32 ............................. AATATTGTCTTTCTTTTTTTAATGGAAACGAG 4168 29 100.0 32 ............................. ATGCCTTGGAAGCCCCAAAACGTCTTAAAATA 4107 29 100.0 32 ............................. CAATCAAGTCAAAATTTATATCGTTTGAATAT 4046 29 100.0 32 ............................. GTTTCTTCCCATGCTACACTAAACCCAAATGT 3985 29 100.0 32 ............................. TATCAGTATTTGCAAAGTTATGAACTAACAGA 3924 29 100.0 32 ............................. TATATCAGCAAAATACCTTGGATTGACTTTTT 3863 29 100.0 32 ............................. AGGTTATAGGCATTTAAACGGCTGTACAGGGC 3802 29 100.0 32 ............................. TCAATCGAACAGATGTTTGGGTAATTTTAGCA 3741 29 100.0 32 ............................. TTTGTATGTATTTCTTTTTGTCAAATGCCATT 3680 29 100.0 32 ............................. GTGATCCCGCTGGACTCGGACAAGCTTGTTGT 3619 29 100.0 32 ............................. AACGGTACCGTCAATCCATTTAAACTCAGGAA 3558 29 100.0 32 ............................. AAGGGGCCGTGACCGTGTAATTTTACACGCTA 3497 29 100.0 32 ............................. TATCTGGCTTATCTGTATCCGGTTATCCGGTT 3436 29 100.0 32 ............................. CTCGTACAACCAATACAGAGCGTGGTTCTGGT 3375 29 96.6 32 ............................C CCCATAGCAACGCAAAAAAGCCTATAAAAGCC 3314 29 96.6 32 ............................C GATTGTACACCATGTTAGTTATGTCTAACTAT 3253 29 100.0 32 ............................. CATAATATTTTTTATGTTATCTCAAAATATTT 3192 29 100.0 32 ............................. GTTTCGCTGATAGTCGGCTCTTTTGCATTCTT 3131 29 96.6 33 ............................C TCATAAAATGCAGTCAGAATCAGCCTTTGTGTC 3069 29 100.0 32 ............................. TTAGAGCAAGAGCAGAAGAAATTTGTCCAAAC 3008 29 100.0 32 ............................. ATGTTCAATATATGTTTTTTGTCTCGTAAAAA 2947 29 100.0 32 ............................. GATACTGTCACCCTGTTCCACCTGGCGATTAG 2886 29 100.0 32 ............................. ACACACCCCCTGACATTGTAGGATAGAGATCA 2825 29 100.0 33 ............................. GCCATTCTCCAGGCATTAACTGCTGCTGTCTTA 2763 29 100.0 32 ............................. AAGGACTTTGATTTTTAGACCTGTAGAAATCA 2702 29 96.6 32 ............................C TGTACAAACAACATCTTCGTCTAAATCTATAA 2641 29 100.0 32 ............................. AATACTTGGTATTAAGGTTTGGCATTGCAAAT 2580 29 100.0 32 ............................. TCCGCAGTATTTCTAAATGCGGTGCAATTGAT 2519 29 96.6 32 ............................C TGGTCAAATGAGCATAATGGATTTTCCAGAAG 2458 29 100.0 32 ............................. GATGAAAACCTGTAAAAGCTATCCCGCATTTA 2397 29 100.0 32 ............................. CATCTGTGTTTCACTTGGCATATGTCACTTCC 2336 29 100.0 32 ............................. GGTATGAGTTAGGGCGTGATATGGTTAGGGAT 2275 29 96.6 32 ............................C ACGGGATCGTATCCAGATAATAAAAAAATATG 2214 29 100.0 32 ............................. TCATCCACAATTGCTTTTCTATACATTTTTTC 2153 29 100.0 32 ............................. TAATTTGTCTAGACCATTTAAAATACAAGAAA 2092 29 100.0 32 ............................. CAAATTAGAATATTTGAAAAGCTATACAAGAA 2031 29 100.0 32 ............................. AGTTTCTTTTAAATTGTAAGGACAAGATAATT 1970 29 100.0 32 ............................. TATAAAGATACAAAGTTGAACGCACAAAAAAA 1909 29 100.0 32 ............................. GTATAAAGTACCATGTAAAGGGTTTAAAAGGT 1848 29 100.0 32 ............................. CACTTTTTGAAAGAGCAAAATCGTTTTCTATT 1787 29 100.0 32 ............................. ATTTTTTGTACTATCTCAAATTATTTTAGGTT 1726 29 96.6 32 ............................C AGAATTGTTTCATGTAAAACATTATGGAAAAA 1665 29 100.0 32 ............................. ACAGGTTCATTATTGTAAATTTGCTTCCATGC 1604 29 100.0 32 ............................. AAGTACAGTGTGCGCTTTACTCAACGCCAAAC 1543 29 100.0 32 ............................. ATTGGACAGATTTTTATTCTTTGACGCTAGAA 1482 29 100.0 32 ............................. GATATACCTATAACGCCATATAAGGACTTTTA 1421 29 100.0 32 ............................. TGGATTGGCGATGATTGGAGAAGAGTAAAGAA 1360 29 100.0 32 ............................. TATGAGAAATAATACGGAAATTTTTTGAAACT 1299 29 100.0 32 ............................. AGCAAAAAAAGGGATACAAAAAAGCTGTATCC 1238 29 100.0 32 ............................. AAAACGGAATATATTAACGAAAAATAAATAAA 1177 29 100.0 32 ............................. TGATTGACCTGTTTGATTCACAAGCATTTCGA 1116 29 100.0 32 ............................. GGGTCTTACTAAGCTGTTTGAAGTATATAGAA 1055 29 100.0 32 ............................. TATGGGAAATGATACGGAAGTTTTCAGAATTT 994 29 100.0 32 ............................. ATATTTGACAACTATACAGACGTCAATGATTT 933 29 100.0 33 ............................. TACTTCGTTGCTGTAACTGTAATAGCAGTTGAC 871 29 100.0 33 ............................. TAAATGTAGTATCCGTAGTGCCTTCAACACTTG C [868] 808 29 100.0 32 ............................. AATTCCCCCTAACTCAGAACACGCAAATTCGC G [805] 746 29 100.0 32 ............................. CTCATATTATAAACCTCCTACTGATTTAATAA 685 29 96.6 32 ............................C AATTGTTCCAGGATATCCTCGATCTACTAAGT 624 29 100.0 32 ............................. TGTAGAGAAAGAAGTTGAACAGTGCGAAGAAA 563 29 96.6 32 ............................C CCAATACAACTCTTTATACGCCGTTTAAAACC 502 29 100.0 32 ............................. TTGGAATAACAAGAGAAAGAGTTAGAATAATA 441 29 100.0 32 ............................. GCTCAAGATCCTGTTGCCTGTGCTTCTGATCG 380 29 96.6 32 ............................C TCCGCAGTTGCGAACTTTGACAACAAAATAAA 319 29 100.0 33 ............................. ACAATTCAGAAAATCCTTGCGTATTCGGTGAAA 257 29 100.0 32 ............................. GAGTTAGGAATTGAAACACCAGATACATTTGA 196 29 100.0 32 ............................. GGTTACAGATTAATTTGGATAATTGTACCGAT 135 29 100.0 32 ............................. GGCGACTTGGAATAGTGGATTAGAGAAAGACC 74 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.4 32 GTATTCCCCGCGTGAGCGGGGGTGAACCT # Left flank : AGGATGAGATAATAGAAGTCGGTGCGTTAAAAATAGAGGCAGGCACTGTCACAGAAGAATTTTCTATGCTTATCCAGATAGAAGGTGAAATTCCAATAGAGATACAAAAACTGACAGGCATTACAGAACAGGAATTGCAAAGTCAGGGGAGACCACTGGACGAAGTACTTAATAAATTGTTTGAATTTGCCGGAAACAGAGTTATTATAGGACATAATGTTATGTTTGATTATAATTTCATCCGCATTGCCTGTCGGAAACTGGGAATAGAAATGCAACTGGGAACTGCTTCCAAAGATACATTGGCATTGTCGCGGAGAAAAATAAAGGGGGTGGGAAGTTACCAGTTGGAAGCACTTATGAAGCATCTGGGATATGAAGTTTCAAATGCACATAGGGCGTTACCAGACTGTTATCTTACATATCAGTTATATCAGAAGTTAAATGAAATGTGAAAATGGGTGTTGGAAAAAGTGAGATAAAATAAGGCTTTTTTTAGT # Right flank : CGAGCTCTGGAAACAGGCAGCCACGCTGATGCGGTATTCCCCGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGAGCGGGGGTGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //