Array 1 231931-233116 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABI01000063.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3263_R1 NODE_2_length_414894_cov_1.62504_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231931 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231992 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 232053 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232114 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232175 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232236 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232297 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232358 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232419 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232480 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232541 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232602 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232663 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232724 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232785 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232846 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232907 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232968 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 233029 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233089 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249786-251401 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABI01000063.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3263_R1 NODE_2_length_414894_cov_1.62504_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249786 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249847 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249908 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249969 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 250030 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 250091 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250152 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250213 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250274 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250335 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250396 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250457 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250518 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250579 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250640 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250701 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250762 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250823 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250884 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250945 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 251006 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 251067 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251128 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251189 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251250 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251311 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251372 29 100.0 0 ............................. | A [251399] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //