Array 1 11951-12169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000020.1 Streptomyces sp. NRRL F-6628 contig20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 11951 27 100.0 34 ........................... CCGAACTTCCGGCTGGCGCTAGCCGAAGCTCGCC 12012 27 100.0 34 ........................... CCGTGCTGATCTCGCGGGCGCGGTCCTCTTCGCC 12073 27 96.3 40 ......................G.... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 12140 27 96.3 0 .................A......... | CCG [12147] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 98.2 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCCACCGCGATACGGCTCGCCGCCGGGGGCGGGCGGTACGTGGACGACGGGCTCGCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGCTGTGCCTGTCGCACGGGACGGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTTGGCTCGGGTGAGGGTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGATCTGTCGGGTTCAATGGGGGCGGGTGCTGGGTGGACACCACGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : TCCCTCCCGGCCCCCGAGCAAGCTCCCGGCAACCGCCGCTCCCCACCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCATGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACTGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCAGCCCGTGCACCTGCGTCCAGGTGGGCCGTGGGTTCGTCCAGAAGCAGCAATGGCGTAGGTGTCAGCCAAGCCCGGGCCAAGGCGATGCGGCGGCGTTCGGATGGGGTGAGGTGATCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGCGGGGTCAGGGTGAAGGTGTGGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27393-27242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000021.1 Streptomyces sp. NRRL F-6628 contig21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27392 29 96.6 32 ............................G GCGCTGTCCGAGGCGGAGCGGGCGCGGCTGCT 27331 29 100.0 32 ............................. GCCGATGATCTCGCCGCGGATCGTCATCCGCC 27270 29 82.8 0 ..............G......CAA.C... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Left flank : GGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCGGGAGCAGTACCAGCGCCAGTTGTCGGGGTCATTGCGGAGGTACGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGGCCGAGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGAACTCACGGCGAGGTGGGCATTTTGGGGCGAATATCGCTATCGGTGAAGCTTGCAGAAACTGGGGCAGAGGCGCCGTAAAGCCGCTGGTCAGGGAGG # Right flank : ACCCCGCCTCACCCCGACCCGGCGCACAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGCGGGCTGGCCAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCCTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94806-94653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000003.1 Streptomyces sp. NRRL F-6628 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 94805 24 100.0 41 ........................ TCTTGAACGGACGAGTCTGATCCGGACCTCGGCCCAAAACC 94740 24 100.0 40 ........................ TCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 94676 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GCGACCTCCTCGACGGTGTACTCCCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCTGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATCGCACCGGCGTCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCTCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGGCAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCGCCCCACCGCGAAAAACAGCGGGCACGACCGCCGAAAA # Right flank : CCCCACCGCACCCCCTGCCGGGGAGGGAAACCTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAGAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCAAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACGGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 193469-193323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000003.1 Streptomyces sp. NRRL F-6628 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 193468 24 100.0 40 ........................ TCTTGTACGCGCGGCGTCCCACCGGACCTGAGCCCCAACT 193404 24 100.0 34 ........................ ACAATCAGCCCGGCCGGCGCCTGAGGCCAAAAAA 193346 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 38 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CGAACTGATCGAGGACTCCTACGACCTGGTGGTGGCGGGCCTGCCCCGCGCGGTCCGCCTCCGCCTCGACCGGCCCTGAGGCCCCGCATCCCGCACCTCTTATGCTCGGGACCATGACCGAGAGCACCGAGCTGCACCCCGAGGACCGCAAGATCGTGACCCTGGCCCGCTCCGCCCGGGCCCGCAACGGGGTCCCGGAGGGCGCCGCCGTCCGCGACGAGACCGGCCGCACCTACGTCGCCGGCACCGTCACCCTCGACTCCCTCCAGCTCAGCGCCCTGCGCACCGCCGTCGCCATGGCCGTCGCCTCCGGCGCCCGCTCCCTCGAAGCCGCCGCCGTCGTCACCACGGCCGACCACCTCCCCCCGGAGGACCGCTCCGCCGTCACCGACCTCGGCGGCCCCACCACCCCCATCCACCTCGCCACCCCCGACGGCACAGTCCACGACACCCTCACCACAACCTGAGCACCACACTCACCACCCCGACCGGCCCAAGAA # Right flank : TCCTGTACGGGCGGCGGCCCACCGAACCCAAGCCACCCTCCCCGCCCGTCAGGGCACCAAAGACAAGGCTCCCCGGGCCACAGCCAGGGCCAAGGCCAAACAGGCACCCCCAGAACCCGGGGTCCAAGGACCCCCACGCATCGGGGACAATGGGCGCATGAGCGCCCCCTCCTCCTCCGCCACCCCCGCGCACCGCGCGGGCTTCGCGTGCTTCGTCGGCCGTCCGAACGCGGGCAAGTCCACCCTGACGAACGCACTCGTCGGGCAGAAGGTCGCGATCACCTCCAACCGGCCGCAGACCACCCGCCACACCGTGCGCGGCATCGTCCACCGGCCCGATGCGCAGCTGATCCTGGTCGACACCCCCGGCCTCCACAAGCCGCGCACCCTCCTGGGCGAGCGGCTCAACGACGTGGTCCGCACCACCTGGGCCGAGGTCGACGTCATCGGCTTCTGCCTCCCGGCCGACCAGAAGCTCGGCCCCGGCGACCGCTTCATCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1492-2560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000063.1 Streptomyces sp. NRRL F-6628 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1492 29 100.0 32 ............................. GCCGGGCGGTACTGGCCGATGGTGCCGGGGAC 1553 29 100.0 32 ............................. AAGTCGGCCACGGCGGGCAGGTCGTTGACCCG 1614 29 100.0 32 ............................. CACCAGGGCGGGCACGGCCGTGGTGTCGGGGT 1675 29 100.0 32 ............................. TAGGAGGAAGTCCATCCTCAGGTTCTTCATGG 1736 29 100.0 32 ............................. CTGCTTCGCCTGACCCAGCGGCCGGTGCGCGT 1797 29 100.0 32 ............................. CGTTCATGAGCTGAGCGTGGACGCTGACGGGG 1858 29 100.0 32 ............................. TCCCAGACCATGCGCGACCGAGTCTGGGACTG 1919 29 100.0 32 ............................. CCGATCAGCTTCCTGCGCGAGATCTACGACCT 1980 29 100.0 32 ............................. GAGAAGCCCATGTCGTACCGCGACGTGTGGGA 2041 29 100.0 32 ............................. CCAGCGCAACACTCAGGTCGGGCCGCCACCCC 2102 29 100.0 32 ............................. GAGGCGTTCAACGCCTGCGTGGCCGCCATCGG 2163 29 100.0 32 ............................. GCGCTGGACAGCCCCCAGGGGGTCAGCCGGTC 2224 29 100.0 32 ............................. ACCGTCGTCAGCTCCGAGATCCGCCGGATCGG 2285 29 93.1 31 ...........................GT CGATACGATCCATCTCAGGATCGCTCCCTTC 2345 29 89.7 32 .T.....T...............G..... TCGTCGATGGACGGCAGGGTCGGCATGGGGCC 2406 29 96.6 32 .T........................... GCTTCGACGGCGAGGCGGATGCCGACGGCGCG 2467 29 96.6 32 C............................ GCACCCCGTATGCCTGGGGCGGAGGGACCGTC 2528 29 86.2 0 .T.................CC.C...... | T,CC,G [2542,2546,2556] ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GCCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCATACACCGCGTCCCCGTTCACCACCTTGAACGCCTCCGGGACCTTCACCACGAACGGCGGCGTGATCTTCCCAAGGTCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAGTCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGAGGGCGTCTTAACACCCCTCACCGACAACCCCCCCTGACCTGCAGTTACACATGGCTATCCGCCCCCGTCCGTCCGCGAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATCGCAAAGGCCCTATAACGCCGCAGGTCAGTAAGG # Right flank : GGGATACTTCTAACGCGAGGCCCGCGAACGGGCCGAGCTCGAACGTTTGCTCTACATCTGCGGGGTGCTTCCCGGGTCTCCGCCGGTCGCCGTTCGACCGCTAGGCGCTCCCTGCGGGGTTCAGCTGCGGTCCGTTTCAGGCTGCCATTCGCAGTTCGGTGCGGGTTCGCTGGACAAGCTCCCGGACGGCTGGCTCACGCCGCCACGGGGCGAGGGCGGCGTTGAACTCGCGGACGTAGTCCAGGGCCCGGGTCGACTGGACGCGGGCGAGGATGTCGACGGCTCGGTGGCCGAACTGCAGGCCTTGTTCGAGGTTCTTGGCCTGGAGGTGGGCGGTCCCGACGATGGCCAGGCGCATGCCGACCGAGCGGGTAAACACGCCAGGCTGCATGGCGGCGGCCTGCGCGTTCCAGGCCAGTGCGGCCTTGGGGTTCTTGAGGTCGCGGAAGACCTCGGCGGCGTCGGCGGAGAGCCGGGCGTGGTGATAGAAGTCGATCCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8222-8497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000063.1 Streptomyces sp. NRRL F-6628 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8222 29 89.7 32 C..T....T.................... GAACAGGAACATCGCGCTCGTCAGGCGGATGA 8283 29 100.0 32 ............................. ACGGCGACGGCAAGGGCGGAAACCCGAGCCCT 8344 29 100.0 32 ............................. CGGCCGCGACGGTGACCTTGGGGAGGGCGGGG 8405 29 100.0 31 ............................. CTGATCGTCTGAAGTACGCGGATGAGGAGCT 8465 29 86.2 0 .................A.CC.C...... | T,TC,G [8481,8485,8495] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : GCGCCAGCGTCACCGTCTCCGACCCCAAAGCCCTCGACAACGCCCGCAAAATCCACCCCCAACTCGACTACGCCGAAGACCCGATCAAGGCAGCCGAAGGCGCCGAACTACTGCTCCACCTCACCGAGTGGCCCGAGTTCACCCGCATCGACCCGGCCGACCTCGCCACCCGCGTCGCCGTCCCCCGCGTCATCGACGGCCGAGGCACCCTGAACCGCGCCCGCTGGCAGGCCGCCGGATGGACCCATCGCGCCCTCGGCCGCCCCTGAACACCTGGCCTTTCGGATCGGGTCGGCCAGCCCCGCACTCGCGAGCTGCTCTGCAGTTCACGTTGGCGCCGTCGGCCAAACTGAAGTGGGCCGCGCGACTGCGGGGATTGCTTTCGGTGAGAGTGGTCTCGAGAGGCGCGATGCAAGTGAATGAGAACCCGCTGGCTTCGCGATAACGTTGCAGGTCAGTAAGTGTCGGCCCCGCACCCGCGGGGATGCTCCCGCGACGAC # Right flank : GGGGATGCTTCGCCGGGGCAGTAGACGGGCTTCATGACGGGTTGGTCGGCCGCGCACCTGTGGGGATGCTCCGGGGTGCGACGCCTGACCGGTGTTGCCTCACCGCGGGGCAGGTTGTCGGCGTACTCCTGTGAGTGCTCCACCAAGTACGGAGATACGTGCACCAGCAGGGAGTCTGTGAGCCGGTCACGTCATCCCGCGGGCAGGGCGATGAACCTCCAGGATGACTGCGGTGCCGGCCACGGTTCGGTCCTCGTGCATGGTGATCTGCTGGCCGGGCTGGAGGTGCGTCCACTGGGAGGGGGTGAGGGGCACGAGGCGAACCGTGGCTCGCCCGCCGGGCTCCAGAATGGGCATGTTTTCAACCCAGAGCAAGGCGATGCTGACCGCACGTCCACCGGTCGGTGAGAGGTGTCCGATGTCCCACATGGGTCGCAGAACACCGGCGCCGGAGATTGGCGTCTTGCGTCGCGCCTCGGCGGCAGGACGGAGTGCCAGAT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4193-6297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000069.1 Streptomyces sp. NRRL F-6628 contig69.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4193 29 100.0 32 ............................. CATCAACCAGCCCTTGCCCGGCAGGCGGTGCG 4254 29 100.0 32 ............................. GCGATGCGGGCGGCCTCGATGCCGTCGCGGAT 4315 29 100.0 32 ............................. CCCCGGGACTGGGCTGGCGGGGGGCTCCTGCT 4376 29 100.0 32 ............................. CCGCCTGCCTGGGACCGGGTGATCTCGGTGTT 4437 29 100.0 32 ............................. ACGACGAGGATCGTGCTCTTGCCCTGCTGGCC 4498 29 100.0 32 ............................. GCGCCGGCGGTCTTCTGCTCCATGGGCCCGGT 4559 29 100.0 32 ............................. ACGATCCGCTACACCGCCGACATCGTGGTCAC 4620 29 100.0 32 ............................. ACCTCCGTCGAGGCCCCCTCGGGGGAGGCCCC 4681 29 100.0 32 ............................. GTGTCGCGGCGGCTCGGCGTGGGGGTGCCGCT 4742 29 100.0 32 ............................. CAGGCCGCGGCCGCCGAGCAGGCCCCGGCAGT 4803 29 100.0 32 ............................. CCGAGAAGGCCGGCGACTACCGCCAGGCCGCG 4864 29 100.0 32 ............................. CGTGGACGACCTGCACCCGGCCGTCCTCCCCC 4925 29 96.6 32 ............................A CTTCCATGGGCCCGCCGCCACGGCGTAGCGCC 4986 29 100.0 32 ............................. CCGCCTCACCACCCTCAGCCCCGACCAGCTCA 5047 29 100.0 32 ............................. GCGTTCGGCCAGTTCAAGGACACCCCCGGCCA 5108 29 100.0 32 ............................. GCCAGCGCGGCCAGGCCGGTGGCGACCGGGAT 5169 29 100.0 32 ............................. GCCCCGGTCCGCCGATACGTGTGGATCGTCTG 5230 29 100.0 32 ............................. CGACTGTCCGATGAGCAGCGCGTGCATGAGCT 5291 29 100.0 32 ............................. CCGTGTCTGGGCGGTCGACAGGATGCGCCACG 5352 29 100.0 32 ............................. TAAGTAACCACCGGACACCCACCCCGGACGCC 5413 29 100.0 32 ............................. GCCTCACGCTCGGCCAGGGCCTTCTCGCGCTT 5474 29 100.0 32 ............................. TTGGGTGGCGTAGGCCGCGTTGGACGGCCGCA 5535 29 100.0 32 ............................. CCGGGCGCGCTCAACCCCTACCGGCTGGTCCC 5596 29 100.0 32 ............................. GTTCAGCAGCAGCGCGCCAGGCCGGTTGACCT 5657 29 100.0 32 ............................. ACGGCGCGTTCGCGGACGATGGTGGCGTAGTG 5718 29 96.6 32 ............................A GCACTGGCCGCCGTGGATGGCGGCGTACTCCT 5779 29 100.0 32 ............................. AGGGCCTCGGTCAGATTGCTGAACGTCTCCCC 5840 29 100.0 32 ............................. ATCACGGTCATGCCGTACGAGATCGCGGCACG 5901 29 96.6 32 .........A................... ATCACCGCGCCCGAGTACGCGCTGCTCCTCCG 5962 29 100.0 32 ............................. GAGTGGGTCGGCCCGTCGCCGCCGGCGACCGC 6023 29 100.0 34 ............................. GATCACGGGGCGGTGGTGTCGGCCAGGTCGACGC 6086 29 93.1 32 ........T...................A CCGGAACCCGGCGGCGAGGAGGGCGTCGACGG 6147 29 100.0 32 ............................. CACCAGCGCGGCGAGGGTCCAGGTGTCGACCG 6208 29 100.0 32 ............................. TCCGCCATGACCCGCATCGCCGTCCCCGCCTG 6269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 35 29 99.5 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CAGCTACTCCCGCGCATCGTGGGGGACATCCAGTCCTTGTTCCAACCCGGTTTCACCGCCCCGGACGACCTGGAAGAACAGGTCGTCGACCTGTGGGACCCCGAGACCGGAAACATCCCAGGCAGCCGAAACCACGCCCCCACCTGACACCGCGAAAAGACGCCATGCCGAACATGACCGTCATCAGCGCCACCGCCGTTCCAGCACACCTTCGAGGCGCTCTGAGCCGCTGGCTGCTCGAAATCACACCATCTCTCTACATCGGAACCATCTCAGCCAGAGTCCGAGAAGAGCTATGGAACAAGACCACCGCGAGCATCACCGACGGAAACGCCGTCCTCGCCTACCCATCAAACTCAGAACAGGGCTACACCATCCGCACCGCAGGTCCGCAACGGCGCTCCCCCGTCGACTTCGAGGGCCTCGTCCTCATGGCCTTCAAGGACACTGAAAAAGGTAAAGAAACCGCAAAGAGCGGGTGACGTCGCAGGTCATGAAGG # Right flank : GTGGGAGGGCCCGTCCCTGCCCGGCGGCTCGATGTCCTCACATCAAGCTCATGGCCAAGGAGCTGCAGGTCCCCGTCATCGCTCTGTGCCAGCTCAACCGAGGGCCGGAGCAGCGTACCGACCGTAAGCCGCAGCTCTCCGACCTGCGTGAGAGCGGGGCCCTGGATCAGGACGCCGACATCGTCGTCCTGATCCACCGCGGGGACGCCTACGAGCCGGAATCGGCCCGCGCCGGCGAGACCGACCTGATCTTCGCCAAGCACCGGGGTGGAGCCAAGGCCACGATCACCGTCGCCGCGCAGCTCCACATGAGCCGGTTCAAGGACATGGCCGCCTGACGTGCGATCTGACGTGCGAGCGAGTCTCGATTCGTTGACGATCTCCCTTCACTCCGGCCCCTCCCCGCCCACGCGTCACCGTCCGTGACAGGGTGTATGCGAACGCAAGATCGAAGGAGAGGCCGTGGAGGAGAGGGAACAGGCCCCGAAGCTGACGGGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3192-2435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000078.1 Streptomyces sp. NRRL F-6628 contig78.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3191 28 100.0 33 ............................ GGCGACCCTCACGGTGCCGGACGTGGTGGCGGA 3130 28 100.0 33 ............................ GGACCGGTGGGAGGACGTCCTGGGCGTCGAGGA 3069 28 100.0 33 ............................ GGAGCACTGCCGCGAGGGTCATGCGGAGCGGGA 3008 27 96.4 33 .................-.......... GGCTATGACCTCCCCAAAGCTGAACTGGCCCGT 2948 28 100.0 33 ............................ GAAGCGGGCCGCCTCGTGACGCAGCCGATGACG 2887 28 100.0 33 ............................ GGAGACGCGGGGGGCGATGGAGTCCAGGTCGAT 2826 28 100.0 33 ............................ GCCGGACAGGTCAATTTTCAATTCCCGGGGGAG 2765 28 100.0 33 ............................ GCGCTATGCCGGTGCACCCGGGCCGCCGCGCCC 2704 28 96.4 33 ....................C....... GTCGGTTTCGACGGTGGTGCGGTGCACGGCGAG 2643 28 100.0 33 ............................ GTCGTCGCCCGGGTCGAGCGGGAGGACGGCATC 2582 28 100.0 33 ............................ GACGTGCACGGCCCAGGCGACGGACGCGCGGTC 2521 27 96.4 33 .....................-...... GGTCAGCCTGGTAAAGCGGGCGGCGCCTGCCCG 2461 27 78.6 0 ...........A...A.C...-..GC.. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CGAGGGCGGGGGTGTTCCGGCGACCCTCACGGTGCCGGACGTGGTGGCGG # Right flank : CAGGAACCGATGCAAGGCCGGTGCGGCAGGCAAGTGATGCCCGCAGGCGCAAGGACTGCCCATTGCCGAACGAGTGACGTTCCCAGGTTGGCCGCTGATGTCCAGCCGCCGCAAATCCGGCGGCCAAATGGCAGCGCGAGTACTAGCCACCGCCCCCGACGCCCCTCTCCACCTCCCCCAAAGCCTCCCCCCACCCAAACCCAGCCGCATCCCCCCGCTTAGGCAAATGCGGCTCCCCCTCGGTGAAGACCACCCGCACCCCCTGCCCCCGCAAGGTCTCCACCGCCCGCCCCACCGCAGGCTGCGCCCCCAGCGCCGTGGACCAGAACGGCGCCGCGACCACCGGCACACCGAGATGTACGGCCTCGGCCGGCACCCCCAGCGCCACCGTGTCCGTGATCCCGGCGGCCCACTTGCACGCGGACGTGGTGGTGAGCGGCGCGACGAGCATCGCCTCCGCCTTGGGCAGCCCGCCGGACTGGCCGGGCAGGATGTAACGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3170-4603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000053.1 Streptomyces sp. NRRL F-6628 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3170 28 100.0 33 ............................ CCTTGACCGGGTGGCCCGTGAGCTGACCGTGCA 3231 28 100.0 33 ............................ CGGGCGTACGAGGGACGCCGCCAGCGGGAGGCG 3292 28 100.0 33 ............................ CAGCTCCCCGTCCTCGTCAGACATGTCTCTCTC 3353 28 100.0 33 ............................ CTCCCCCTCCCCTGCCCCCGGTCGAGGACGCGG 3414 28 100.0 33 ............................ CTGCCCTGGGAGCCGGAAGGGCCGACCCCGACC 3475 28 100.0 33 ............................ TTCGCGTCCCCCGGTCGATACGGCCACTTCCTG 3536 28 100.0 33 ............................ CCAGGACATCGAGTCGGCGGAGAGGCAGGCGTC 3597 28 100.0 33 ............................ GCGCCCGACTTCGGGGTACACCCGGTCGTACGC 3658 28 100.0 33 ............................ CCAGACGGTCTCGCCGCGCAGCGCGTTCAGGGC 3719 28 100.0 33 ............................ GCCGTCCTCCGCACCATCCCCGACCAGACCGGC 3780 28 100.0 33 ............................ GCGCGGCGGGTCCTGGTACACGACGTTCACCGT 3841 28 100.0 33 ............................ ATCAGGGTCGCTGTACTCGGCGTCCGACGCCGG 3902 28 100.0 34 ............................ GCCACGCGTTCAACGGCACGTCGGGGTTGCCGGC 3964 28 100.0 35 ............................ CCCCCCCTCCGGAGGGTCCCGGAGGGGGTTCCTGG 4027 28 100.0 33 ............................ GCCCTCAGCGCCGCCGACGACGTACTGCCTGGC 4088 28 100.0 33 ............................ GGCGTCGGCGGCGGGCGTCTCGCTGGGCGTGGC 4149 28 96.4 33 ...................T........ TCCGCTCGTGGACGCGGCAGGCCGGAGAGGCCC 4210 28 100.0 33 ............................ TCACCCGACGATGAGGCGCGCGATCGGTCGGCC 4271 28 100.0 33 ............................ CAGTCCGGGCGACTGTTACCCCACCTGACCTGG 4332 28 96.4 33 .............G.............. CTCTCTTCCGGGCCTGACGCCCATCGTGATCGC 4393 28 96.4 33 .............G.............. GTTGCGGTTCTGCATGGAGAGCGCCGGCAGAGT 4454 28 96.4 33 .............G.............. GGCCAAGGCCGCATGGCTCATCGGCCGCATGGC 4515 28 96.4 33 .............G.............. CGTCGGTGAGCTCCAGGTGCCAGCTGCCGGGGT 4576 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ =================================== ================== 24 28 99.1 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GGGCCTGCCGGGCCTGCTCGGTGTCGAGCGGCCGGAGCGGGCCCCGGCGAGCGGCGGGCGCACCTCGGCGCCGCGCCGGGTCTCGGCCTCCCGCTGCTCGGCTGTCGCGATCGCCTTGTCGATCCGGGCCAGCCACATCGCGTGCCACGTCCGCAGCACGTGCAGGCACGGCAGGTCGGCGGGCAGGTCGGACATGTGTTCGAGTCTAGGTATGTCGGGGCCGAAGGCGTGCGGCACCCCCCTGCTTGACTTCGAAACGCCGCCTTCCTCTCCCCCATCAATCCGCCCGGCCTGGTACCGGGGCCGCATCGCCTGCATGAAAATCTCGCTCGCCACGGTCCTCGCCCTTGCACTCTGCGGCCGGCAGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCATGGGTATGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCCGGCGGGCGGGATCGGTATCGCCTTCGGCACGCT # Right flank : CCCGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGAACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCAATCTCACTGCCGACACGCGGGCGCCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAAGGGACGTCCTTGAAGGTGTGGGTTCGATGCCACTGGTAGTAGGGCTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTTTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGCGGACTCACGCGAAGAGCGCCGGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8333-8605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000053.1 Streptomyces sp. NRRL F-6628 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8333 29 93.1 32 .........A...C............... CCGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 8394 29 93.1 32 .............C..............G CGGTAGCGGCCCCGCCGAGGGCCCAACTCAAG 8455 29 100.0 32 ............................. TTCACCCTGGTCAGCTCCGATCACCTGCCGAC 8516 29 96.6 32 .............G............... TGAACCCTGGCCGGCCCTTCCACGACGACCGG 8577 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCGGCCCCGCACTCGCGGGGATGCTCCC # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGGCAGACAACAGACTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGACCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCGGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACTAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCCTGCGATATCGATCATTC # Right flank : CTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGACGAGGCCTCTTCGCGCCTGCGGGGATGCTTCAATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACTCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 12648-13004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000053.1 Streptomyces sp. NRRL F-6628 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 12648 28 100.0 32 ............................ CTCCGCCCCGAGATCGACCTCGTACAGCCCCG 12708 28 100.0 34 ............................ GCCCGGGTACTGCTACGTCGTCGCCGGGGGCATC 12770 28 100.0 33 ............................ CCAGCGCAGCCAGCTCGGCAGTTGTAGTGGCCG 12831 28 100.0 33 ............................ CCTGCACGGCTCGGGCATGAACATCACCATCAG 12892 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACCTGATCTCCCAGGG 12977 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 6 28 97.6 38 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCCGCGCCGAACACCAAGTCCTCCAGCGATTCCGCGCCCTCACCGACGCACGCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTAGTCCTCCACCACGGCCACGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCGGGAGAGCACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCCAGCAGAACCAACAGCCACCTCAGCGAGACAAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGGGGATGCTCCGACCAGCCGCGAGTCGGCGCTGGACTACGAGCA # Right flank : TGCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCAGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGCAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 18715-19841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000053.1 Streptomyces sp. NRRL F-6628 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 18715 28 96.4 33 ............T............... CCGATGACCGAGTTGATGCTGGAGAACGCGGCC 18776 28 100.0 33 ............................ CCTTCGTATTGCCAAGTCCGTCGCCGATCAAGG 18837 28 100.0 33 ............................ GCGACGGTTGCGGTCGGTTCCGGTCTCGGGGCC 18898 28 100.0 33 ............................ TCGCTCCTGGAGTTCCTTCGCCCTCTCCTCAAA 18959 28 100.0 33 ............................ GAGCATTCAGCTCGTTGAGGAAGGTCGGGTGCC 19020 28 100.0 33 ............................ CTCCCCCTGGACGGCGCGGTAGACGTCGACCAG 19081 28 100.0 33 ............................ GAGGATGCGCGATCCCTTGCGGTAGCTGTCCAG 19142 28 100.0 32 ............................ AGCACATCTAGGGGTGTGGGAGCCAGTCAGCG 19203 28 100.0 32 ............................ CCAGCTGGCGTAGGGCATGTCCGGGTAGGGCC 19264 28 100.0 33 ............................ GACCAGGGCCGCGCCGTAGGCGGCGGCCGGGTG 19325 28 96.4 33 .........................C.. GTACCTGATCCCAGACGGAGTGCGTCTCGCGGT 19386 28 100.0 33 ............................ GCGCCAGGCCACCCGCGACGCGAACGCGAAGGC 19447 28 100.0 33 ............................ CTACCGTCGTCGTCGCACAGGACGACGTACTCA 19508 28 100.0 33 ............................ GAGGTCGGCCAGGGTCTTGCGGGCGAGCGGGTC 19569 28 100.0 34 ............................ GGTGAGCCACTTCCAGTCGCTCACCGCACCCTCA 19631 28 100.0 33 ............................ CCCTTCGGCGCCCGGCCCGGCCCCCAAGTTCTG 19692 28 100.0 33 ............................ GTCGCCTCCGCGTCGAGCGCGACGGGCTCGACC 19753 28 100.0 33 ............................ GCAGACGATGGAGCGCTACGCGCTGATCGCGGC 19814 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGATGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCC # Right flank : CTCAGCCGTGTCCGCTCGCGAGCCCTTCGCTGCTGTCGGCCCCGCACCCCCGTCGTCAACATGCGCGGCCACGCCGAACTCACGCTGCGCCGCCACGGCACGGCCCCTCCGGAGGTACGCCACGCCCTCGAACGCATCACCAGTGAGGCGCGGCGGATGTCCCGCCTCGTCGACGACCTGCTGCTGCTCGCCCGCCTGGACACCGGCCGGCCGATGGAGCGGGAACCGGTCGACGTGACGCTGCTGATCCTGGACGCCACCGCCGATGCACGCGCGGCCGACCCCGCCCACCACTGGTTCCTCGACCTCCCCGAGGAGCCGGTCGCCATCGCGGCCGATGCCCACCGGCTCCAGCAGACCCTCGGGAACCTGCTGGCCAACGGACGCACCCACAAGCCACCGGGCACCGAGGTGACCGTCGCCCTGACGGCGGACCGCGCCGCGGTCCAGGTGAGCGTCAGCGACAACGGCCCCGGCATCCCCGAGGAGGTGCGGCCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 21126-22973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHX01000053.1 Streptomyces sp. NRRL F-6628 contig53.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 21126 28 100.0 33 ............................ CCTCGGCGCCCGCCTCCTGGACTGGGTTGGCCA 21187 28 100.0 33 ............................ CGACCGCCGGCGCTCTGCGCGACGACGTGCTCC 21248 28 100.0 33 ............................ CGCCGACGCCTACATTTACGAGCAGTACGGATA 21309 28 100.0 33 ............................ GCACTCCACGAGGTGCGCGTGGGCGTCCCAGAG 21370 28 100.0 33 ............................ GAGCGTGCCAAACCCTGTCCACGTCAGAGTCCA 21431 28 100.0 33 ............................ GCTCGACCGGCCCGCGCCGGCGGGCGATCTCTA 21492 28 100.0 33 ............................ CGCAGCAGGACGGCCACCGTCCGCGCAGACCTC 21553 28 96.4 33 .............G.............. GGTCTACCGGCACTACGCCCCGGCGACCTGGAC 21614 28 96.4 33 .............G.............. GTGCTCGCGACGCATGCCGCCCCAGGAGGACGG 21675 28 100.0 27 ............................ GGGCGGTGGCGATGGCGCGGCCCCGGA 21730 28 100.0 33 ............................ GTCATCAGGCTTTCCCTTCCGTGACGGTGGTGG 21791 27 92.9 34 ..............T..........-.. GTACGGCTCTGGCACGGCGGCCGGCGCTCTGGCG 21852 28 96.4 33 .............G.............. GTGTGGTGGCGGTGCGTGGCCAGGCCACAGGCT 21913 28 100.0 33 ............................ GGTGCCGTCGCCCTCGACCCACACCGCGTACCG 21974 28 92.9 33 .............G............T. GATCGCTGAGACCGCCCACGGCCTGAACGTCAG 22035 28 100.0 32 ............................ GAGAACGGCGTCCTGGTCTGCGGCAAGTGCGG T [22060] 22096 28 100.0 33 ............................ CCGGTCGGCGGACTTGATCTCCACCCGCAGCCG 22157 28 89.3 33 .............G.A........T... CTCCGCCGGAGCCTGACGGCCGTGACGCAGCGC 22218 28 92.9 33 .............G..........T... GGAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 22279 28 92.9 33 .............G..........T... GATGCCGGAGAGCCTGAACCACTGGCGCGTCAC 22340 28 100.0 33 ............................ CCCGCACCACCGAACTGGTGGCTGACCTGCGCG 22401 28 96.4 33 ..........T................. GCAGTGGGTGAACGGCAAGCTGAAGGATCACTG 22462 28 85.7 30 .....................C.C.G.T GATCGCGCACCTCGCGGAGCGCGGACTCGT 22520 28 96.4 33 .............G.............. TGGGCGCTGAGCTTGTCCAGGTCGTCCAGGGTC 22581 28 100.0 33 ............................ GCCGGGGCCGTCGAGGTAGTCGGCGCGGACGGT 22642 28 96.4 33 ....................A....... GGCGGCGTCTACGAGGGGAGCCAGGGTGCGCGC 22703 28 89.3 33 A.....T.T................... CGCTGGTGCCCGGTCGCTGGCAGGCGGTTGTCT 22764 28 96.4 33 .....................G...... GCCCCGCGACCCCGACTCCGGCTGCACGGGCCG G [22781] 22826 28 92.9 33 ...........G..............T. TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 22887 28 92.9 31 .......T...G................ CACGACGCAGCCCGCTACGCCCGGCGCTGCC 22946 28 85.7 0 ......T...TG.........G...... | ========== ====== ====== ====== ============================ ================================== ================== 31 28 96.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AGGGGACGGAATGCCTCGGGGAGCCGGGGAGCCGCCGCGGCCCGGCATCGCACATCGACCCGCACGGCTCGCGGAGCGGCGCTCAGGAAGGCGAGGGCGCGTCACCGTCCCCGGCCCCTTCGCCCCCGCCGGCCGTCCGGGTGTGCTCACCAACAGTGATGCGGTGCGACCCCGCGTCCCCGTCTGCCTCCGAGCGGACCACCGCGGCGCCGGCGCCGGACGCCGGCGGGTACTGGCCCGTGTGGTAGATGACGGTAAGGAACGGAAGCACCGCGTCCGTGCTGATCAGGTCGCCGTTGCCCCTGACCGGCAGGAGTTCGGGAGAGTGCAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAACAGAACCAACAGCCGCCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCT # Right flank : CGAGCCAGCCTGTGGTCATTCGATCGGGGCTCGCTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGGGTTTTGCCCTCGTAGGGGCGTGATCGCACGGTCCAGGGCCCGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGGAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGGGCTGGAGGGTGAGGGTCGCGGTGTTCTCGTCGTACTTGACGGCAGTGACGCGGCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCAAGCCGCCGGCCGCGACCGGAGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCCGACCGCCGGTCCTGCGGGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //