Array 1 440582-440976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068395.1 Serratia marcescens strain MRSN696556 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440582 29 100.0 32 ............................. CGATGTTTAGCCGCAAGCAGGCCACCGACGAT 440643 29 100.0 32 ............................. GTGAGATAAAAACGCCGGTAGTTAACGCGGTC 440704 29 100.0 32 ............................. TGAACATGATTTCTTCTCCTGGGTCTTCGGGT 440765 29 96.6 32 ............................A CCCGCCGGGCATCGCTTTGTCTGAAATAAGGA 440826 29 100.0 32 ............................. CGCCTGCATCCGCCGCCACAACTGAGTTTTTG 440887 29 100.0 32 ............................. TACGACCTGACCGGGGGCGATTTTGCCCCTAA 440948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGTGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGACGGGCGTAGGGGGGAGTATCTTGTTGTTATAGCGTGAAAATTCGGTGATTCTGCTTTATTGCTATAGATGGTTTTTTTATTTATTAGATTTCAAAGAGTTATGTGACTGCCCCGATGCTTAAATCGCGGTGAAATCTCGTAGATGTTGAAATCCATTTAATTCAATTAGATATATTTATA # Right flank : GGGCGCGACAACGAAGCCTACCGCGGTATTAGCGTGTTCCTTACGCAAGTGTGGGGAAGTAAACGCATCAAGAGATATAATAATTCAAATGAAATAATACCATGCTAATTATATTAAGTAGTATAAGGAGTTTTTGTCTTATTTAAGAAGCTATATGAAATTTAAATTAATATCATTGCGCTTTGATTTTACTGTTGTGAGCTTAATTGGCTTTTTGTGTTTTCGAATAAAATATAAGTACCTTTAGCCTGATGGAAGTGCTAAAGATAACAAGGCATTATTTATATCTAAACGGGATTGTTTATGGGAAGTGATATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTTTTCATGCCGCCGATATTCTGGCAGAGATAGGCTTCTCTCGTGCCGATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 451640-453381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068395.1 Serratia marcescens strain MRSN696556 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 451640 29 100.0 32 ............................. CAGCCTGTCGGGAACGCTGAATTCGCTGATCA 451701 29 100.0 33 ............................. GTCAACGGCGTTGACCGGCTGGCCGAGCATCGC 451763 29 100.0 32 ............................. TAATAACGCCGCAGCGTTAGCGCTTGTTCAAT 451824 29 100.0 32 ............................. GGCCGGTGGAAATGCCGCAGGGCGCGACGATC 451885 29 100.0 32 ............................. GGCACATTGCCCATATCGCGCACGGTCGAGCG 451946 29 100.0 32 ............................. AAATGCTGCTCTATCTCGCCCGGGGATGGCTC 452007 29 100.0 32 ............................. GTCGAGAACTACGCCGAGCCGGTGCCGATTGA 452068 29 100.0 32 ............................. GGGCAATAATTTCTAACCCAATTCTGGGTAGC 452129 29 100.0 33 ............................. GATGCATGGGGCGCTCAAATCGGCGCTCTCCGC 452191 29 100.0 32 ............................. GTGGGTTAATCGTCTAAATAGGATTTGATGAT 452252 29 100.0 32 ............................. GTATGGTTCCGCTGATCATCCAGGTGCCAATC 452313 29 100.0 32 ............................. CCGACGCCGACACGCCTGTTTACCGATATTGA 452374 29 100.0 34 ............................. CTTACTACCGCCACTCATAATGCCCCCGTCATAC 452437 29 100.0 32 ............................. CTTTTCAAGCACCGCCGGCGAATGCAGGTCGA 452498 29 100.0 32 ............................. CCCTTCGCCGAGGGGCTTCGATAATGACAACC 452559 29 100.0 32 ............................. GGATCGCCGGCACGCATTGCAAGACCGAATTT 452620 29 100.0 32 ............................. GCATTGCAGCCAGCGGATTTCTGATTTCGTCG 452681 29 100.0 32 ............................. AGTACAACCGTAATCAGCTGCTTCTCTCTGGT 452742 29 100.0 32 ............................. TTTCTGGACCATAAATTTTAGCGGGATGTATC 452803 29 100.0 32 ............................. AATACTCGATTTTTTCCCCTGCTGTTCCCCGC 452864 29 100.0 32 ............................. GGAATGCCTCACTAAAGGACGTGCCGGCAGAG 452925 29 100.0 32 ............................. GCGTGAACGTCAAAGACAGCGCAGGACGTCTA 452986 29 100.0 32 ............................. CATCGACGATTTAGTTTCTATCGCCACTGCCA 453047 29 100.0 32 ............................. CGCCCCAGATTGAGGGGTTGTAGTTTGAGCCG 453108 29 100.0 32 ............................. GCCGCCTGCACTTTGTCAAATCGCGCCTTGCC 453169 29 100.0 32 ............................. AGAAATGATTACTGTTACAGCCTGGGCGGAAC 453230 29 100.0 32 ............................. TCCGTTAGGTCGATATGCTTGCAGCTGAAGTC 453291 29 96.6 32 ............C................ ATTATGTCCAGAAGTGGTTAGAGGAACAGGGA 453352 29 82.8 0 ............C............CGAT | C [453373] ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGATTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGGGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGCTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTACGAGGCCGGTTGGCCGTGTGGCTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAGCCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCCATTGAAAATCAGTAAGTTATCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATTAGTTAATCTTAGA # Right flank : TTTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCACCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGCGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 456786-460339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068395.1 Serratia marcescens strain MRSN696556 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 456786 29 100.0 32 ............................. TAAACTTACCAGAAAGGTAACTATCGTGCGAG 456847 29 100.0 32 ............................. AGAAGATCTAAAAGATAAACCCCTCTCTAACG 456908 29 100.0 32 ............................. GGCCACCAACGCGGTCATCGTATAATGGCTAT 456969 29 100.0 32 ............................. CCATCACCCTGCACCTACCGCGCACCCTGCGC 457030 29 100.0 32 ............................. AGGTGAGCGGCCGCGTTGATTGGAACTCATTC 457091 29 100.0 33 ............................. TCATGCGGCTACGCGCGGCGGCCGCGTGTTTGC 457153 29 100.0 32 ............................. CGCAACGTGCGCAACCAGCAGCAGCCGGACGG 457214 29 100.0 33 ............................. GTTAATCTTGTCGAACCCTTGCGCGATGACATC 457276 29 100.0 32 ............................. TTCGACCAGCACCAGCCGCAGGACGTGGACAC 457337 29 100.0 32 ............................. CGGCCATGCTGTTACGCTCCCAGCTTAACGCC 457398 29 100.0 32 ............................. TCGCTGTCTAACGTGCCGCTGGATGGCGTGCT 457459 29 100.0 32 ............................. GTTGCCGAGCAGCTGGCCAGCATTGCGATCGA 457520 29 100.0 32 ............................. CCTTTACGATGTCGGCTTTCGATAAATTAGCG 457581 29 100.0 32 ............................. GAAATTGCCTTGTTCCTCGGCGCGTAGGCGGC 457642 29 100.0 32 ............................. GTATCTTTGCCGAACCTACCCTGCAAAAGTCG 457703 29 100.0 32 ............................. CATACTATGGGCCACTCGTTCGAAATGTCCGA 457764 29 100.0 32 ............................. CGGTCAATAAAAAAGAGGTCCGGCCGCTGACC 457825 29 100.0 32 ............................. CCCAGGTCTCCGCAAATACGTTATCCAGCCAG 457886 29 100.0 33 ............................. GTTTCCCCGTTCTGCGGGTAGATATTCACCTGC 457948 29 100.0 33 ............................. TTCGTGAGGGCGATCATGACGACCGCTGATTAC 458010 29 100.0 32 ............................. CTCCTGACGTTCTGCGTACTGGTGTTAGAAAA 458071 29 96.6 33 ............................A GCCGCAACGGCCGGCCGCTCACTGAAGCCGTAG 458133 29 100.0 32 ............................. CAAACTTTGTTAATTAGCCAGTGCTGCGACAG 458194 29 100.0 32 ............................. GATGGAAAATGGCGGCCAGTTGAACCCGGCGC 458255 29 100.0 32 ............................. GCCGAAGAAACGACGGCGGCGGGGATTGTGGC 458316 29 100.0 32 ............................. CCATCGACAAGCGCGCCGCGCAGCTACCAGAC 458377 29 100.0 32 ............................. CCGGGCTATTACGTCCAGCCATATATCAACGT 458438 29 100.0 32 ............................. CGAAACACCGCCGCAAATGACCAGCGAGGGGC 458499 29 100.0 32 ............................. GGCGAAATGTCCACGCCAACAACGAACCCGCG 458560 29 100.0 32 ............................. CGTCTGAACATCGTGATTTGCCTGGGTGAGAG 458621 29 100.0 32 ............................. GGTAAAAAAGTCCACCCGCGCAGTGTTGCGGC 458682 29 100.0 32 ............................. TGGGTGGATGACGTGGCGGCCGGTGAGATTGG 458743 29 100.0 32 ............................. ATGTTCGCATTGAGGTGTTCGACGGCCAGAAT 458804 29 100.0 32 ............................. TCGTTATCCGGATCGCCCATGTTGCACTTGAC 458865 29 100.0 32 ............................. TTGATGGATGTTGCATCGGGCGCTTTGGAGGA 458926 29 100.0 32 ............................. GCACGATTATCGCGCTATTACGGGCTGTTACA 458987 29 100.0 32 ............................. TTGAGCCAGCATTGCGGAGTTGGCTTGCAACT 459048 29 100.0 32 ............................. CTCACGTTAAAAACCGAGGATTACCAGGGGGC 459109 29 100.0 32 ............................. CGGCGACGTTATCAGGTGCGGCTGGCGCAGGC 459170 29 100.0 32 ............................. CTGGCGTTTCACATGACAGGCCGCGTGATGGT 459231 29 100.0 32 ............................. GAGGAAGAAGACGACGAAGCAGCCTTTACCGC 459292 29 96.6 32 A............................ CAATCGCAAGTGTCATCTGGCGAAAAGTCTAC 459353 29 100.0 32 ............................. GCCGGAGGATTCTCTTTGCTTCCAGGAAGTAC 459414 29 96.6 32 ............T................ GCCGCCAATTCTTTTTGCGTCAGGCCGAGTTG 459475 29 100.0 32 ............................. CGATCAGCGCCGGTGATGTTGACTACTACGAG 459536 29 100.0 32 ............................. AGGTGTTCGGGCCGACAGACAACTGGCAGCGC 459597 29 100.0 32 ............................. CGATTATGAGACCCTTGATAGGGCTATATAAA 459658 29 100.0 32 ............................. GTGTCACGCTGTACAACCCGCGCACCATCGAA 459719 29 79.3 12 .................CCA.T.G....C CATACGCGGCAA A [459736] Deletion [459761] 459761 29 100.0 32 ............................. TCCACGGCCAGGCGCTGGGTGTGCAGGCTGTT 459822 29 100.0 32 ............................. TCATAGGGCAGCATCTCCCCGCCTGCCGTACA 459883 29 100.0 33 ............................. GCAGGGGTGGATGATGGCGTTGCAGTCCTCCTC 459945 29 100.0 32 ............................. CCCATGGTCACGAACTCGGCCGCGATGCCATT 460006 29 100.0 32 ............................. AATTTATCCGGTCGATGCCGCCGGATGCGCGA 460067 29 100.0 32 ............................. GCGTCGTCAGGCTGACGAAAGATGGGCAGCGA 460128 29 100.0 32 ............................. TAGATCGCATTGCATCCGGCGTTATGACAATA 460189 29 100.0 32 ............................. CTGGCTACGCCGGTGCGGTTGCCGCCGGTTCA 460250 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 460311 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : ATTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //