Array 1 1392437-1391673 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031699.1 Neisseria animalis strain ATCC 49930 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1392436	    35	  83.3	    30	A..-...T.A..G....T..................	CAGTATGCCTGTCGGTATGTTGTTTTCTTG	AA,C [1392424,1392431]
   1392368	    36	 100.0	    30	....................................	TGAAACGCCTCCTCTGCCGTGCTGGGGTAC	
   1392302	    36	 100.0	    30	....................................	TACATAGTAGTTTTCAGCAATATATGACTT	
   1392236	    36	 100.0	    30	....................................	ATTGCTTTGTTCGGCCTCAAACAAAAATTC	
   1392170	    36	 100.0	    30	....................................	CCGGCACACCCGGCACCGGCAAAACATCTA	
   1392104	    36	 100.0	    30	....................................	TCAGTAATGCCCAAGGAGAAGTCGGCAGGA	
   1392038	    36	 100.0	    30	....................................	ATTTTTTGGTTGCTGTAGGAGAGGTCTCCA	
   1391972	    36	 100.0	    30	....................................	TTCATACGGCGCAGCGCATCCAGCAGCTCA	
   1391906	    36	 100.0	    30	....................................	TATAAGCTTTATATAAGAAGTAGGGTTAGC	
   1391840	    36	 100.0	    30	....................................	TAACGCTCGGCTTAGGAGCGAAAATGTACA	
   1391774	    36	 100.0	    30	....................................	ATGGTTAACGAAGGCGCGGGCTGATGTAAT	
   1391708	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.6	    30	GTTGTAGCTCCCTCTCTCATCTCGTAGTGTTACAAT	                              	       

# Left flank :   CGGCCCGGGCTTGGGCGTACGCATTTTGGGCGAAGTGAAAAAAGAATACGCCGACCTGCTGCGTCAAGCCGACGACATCTTTATCCAAGAATTGCGCAACACCACCGATGAAAACGGCACTTCATGGTACGACCTGACCAGCCAAGCATTCGCCGTATTCCTGCCGGTGAAATCCGTGGGCGTGATGGGCGATGGCCGCACCTACGATTATGTGGTGGCACTGCGCGCCGTCGTAACCAGCGACTTCATGACCGCACACTGGGCGGAGCTGCCGTATTCCCTGCTCGGCCGCGTGTCCAACCGCATCATCAACGAAGTCAAAGGCATCAACCGCGTGGTGTACGATGTAAGCGGCAAACCGCCCGCCACGATTGAGTGGGAATAAAATTTAATCAAAACTAAGGCCGTCTGTATATTTGCAGACGGCCTTTTCATTGCTGCTTTTTCAACAATATATTATTTTTAAAATCATAATGATATGGTGTTACTTAACCTTGCCA
# Right flank :  AGCCAAGCGGGGAATCCTTGAAAAACAAGGGTTCTCCGCTTTATTTCTGCCTAAAATTCCGTTTTAAAACAGCAAAAGCTGGTCGGCATTCACCTTTTTTTCACGCGTTTTCGGCTCGCCAATCAGCATCACCATACCCGCATATTGCTTTTCCGTTACCTCCAAATAACGCACCTGCCCTTCTTCGGGCAGTTGTTGCAGCAGCCTTTTGTGGTGTTTTTGCAACGCATCGCGCCCGCGAACGATGCGCGAATATACCGAAAGTTGCAGCATCTGGTAGCCGTCTTTCTGCAAAAATTTGCGGAACCGGTTGGCTGCCTTGCGCTTGGCAGCGGTGGTAACGGGCAGGTCGAAAAAGACGATTAAGCGCATAAATTGGGCCTCACTCATAATCATGCTCTTTCAGAGGCAGCATTTGCGGCAGCTTCAGCAGTTTGGGATTGTTTTCGGTTAATGCCGTCTGCAAAGACTGTATGGTGCGGTCGATCGCGGCCAGCAGG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTCTCTCATCTCGTAGTGTTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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