Array 1 22641-24061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKZ010000020.1 Neisseria meningitidis strain 107075 NODE_20_length_40822_cov_31.810248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22641 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22707 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22773 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22839 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22905 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22971 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23037 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23103 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23169 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23235 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23301 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23367 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23433 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23499 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23565 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23630 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23696 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23762 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23828 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23894 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23960 36 100.0 30 .................................... AAAATCGAAGGTCTTAAGCCCGTCGTTTTC 24026 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //