Array 1 78224-77895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPC01000011.1 Erwinia amylovora UPN527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78223 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 78163 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 78103 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 78043 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77983 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77922 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89793-87687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPC01000011.1 Erwinia amylovora UPN527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89792 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 89731 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 89670 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 89609 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 89548 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 89487 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 89426 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 89364 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 89303 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 89242 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 89181 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 89120 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 89059 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 88998 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 88937 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 88876 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 88815 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 88754 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 88693 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 88631 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 88570 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 88509 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 88448 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 88387 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 88326 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 88264 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 88203 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 88142 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 88081 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 88020 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87959 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87898 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87837 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87776 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87715 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 102924-100700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPC01000011.1 Erwinia amylovora UPN527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102923 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 102862 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 102801 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 102740 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 102679 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 102618 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 102557 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102496 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102435 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 102374 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 102313 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 102252 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 102191 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 102130 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 102069 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 102008 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 101947 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 101886 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 101825 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 101764 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 101703 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 101642 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 101581 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 101520 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 101459 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 101398 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 101337 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 101276 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 101215 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 101154 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 101093 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 101032 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 100971 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 100910 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 100849 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 100788 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 100727 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //