Array 1 113871-114204 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113871 29 100.0 32 ............................. CCCCCACGCTGGTGGCCGCTCCTCGCTGCGGA 113932 29 100.0 32 ............................. CCCGTCATGTCCGGGAGCTCGACGCCCGCGGG 113993 29 100.0 32 ............................. GGCCGGAGTGCCCGGGCGAGTCGGCGTTCGCG 114054 29 100.0 32 ............................. TGCATGGGGATTGCGGTGAGTCCGCGCATCTC 114115 29 96.6 32 ............................G GTTATCGCCGGGGCGGGTGCCCTGGCCAAGCG 114176 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTTGGCCCCGCGCTCGCGGGGATCGCTCC # Left flank : ACGATCAGACCGGCACCGTCGCCGGCGGCGTCGACTACGGCGGGGACGACACGCCGGACCTCGTCCGAGAGGCCTCGATGGGAGAGGACCACATCACCATCCTGGGCCCCGACTTCGACGAACCCACCGAGGGCGGGAGACAGTGACGGTCATCGTGCTCATCGCCGTCCCGGAAGGCCTGCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCCGGCGTCTTCGTCGGCACCCCCAGTCGCCGCGTACGCGACCGCCTCTGGCAACTTCTGACCGAGCGCATCCGGGACGGACAGGCCGTAATGGCCGAACCGGCGAACAACGAACAGGGCTGGGCCGTTCGCACGGCCGGCCGCGATCGCTGGCGACCGACGGACTTCGACGGACTGATCCTGTCGGCACGTCCCGGAAAGTGAAGACATCAATAGGTGTGGTGGCATGATGCAACTAAATGAAATTCGTGTTACCTGCCGGTAGAAGCCCAGTTCAGGCAGC # Right flank : TCGCGCGAGCCCATGGGCCTGATGCCCAGATCTGTGGGCCCCGCGGAGATCGCTCGACGCAGAAGACCGGTGACACCTCCCGGAAGTGGTTGGCCCCACCTGCGCGGGGCCGACAGACCATCATGCCTACGTGCTGGGAACGGCCTGGGAGCATCCCCGCTCGCGCGGGGCCGACGCCGAGGTTGGCGCGTTCGCGCAAGTGGGTGCGGGAACATCCCCGTGTTCGCGGGGCCGACGCGGCCTGTGCGCGGCCGTCTTCTCCGCCTCGGCCGAGCAATCCCGCGTTCCCGGGGCCGACGGCGAGGTCGACGGCGTGCGCGGACACCGCCAGGAGCAATCCCCGCCTGCGCGGGGCCAGCTTGGCGCCGATGCGGGCGGCGTGCCGGTGCCAGGCCCGCCGAGCCGCCGGGCGGCGTGGTCGTAGCCCTGCAGGAACGCAGTCACGCCAGCGAGGGAGACGCGACCTATGTACATCCCGGGCCGCTTGGCAAAGAACGCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCGCTCGCGGGGATCGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 115296-114839 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115295 29 100.0 32 ............................. AGCCAGGTTCGGCACGAACCCTCCCTCAGTAG 115234 29 100.0 32 ............................. TCCCGGGATCACCGGGCACGCCGGGTCGCACG 115173 29 100.0 32 ............................. GGCGCCCCGCACCGCGCGCGGCGACCTCGCCG 115112 29 100.0 32 ............................. CCACCCCGGGGCCGTGGCCGGCCCCGGGGTCG 115051 29 96.6 32 ............................T GAGTATGGCGTGGGCCGGCATGTGGTATCAGG 114990 29 96.6 32 ............................G ACATGGGCCACGGGCCGCTTGTGTGGGAGGAG 114929 29 96.6 32 ...............A............. TGATCCGCTCCGTACCGTGCTGGCTCCGGGAC 114868 29 82.8 0 A..........A..A............TA | C [114843] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTCGGCCCCGCGCAGGCGGGGATGTTCCC # Left flank : GACCCGGGTCGGCCCCGCGCACGCGGCCGCGTGCCTGAGTTCGGAACGATATCCGCAGGCCGTATTTCATGATTGGTTGCCCAACTCCGCGAAGTTGAGGGCCGACAGCCGGACATCATCGGCCACGCGGGCGCGGGGATGCTCCCTCCGGATAGGGGCAGCGGTGGTGAACGCGAAGTCGGCTCCGCGAGCGGGATTGCTTTGCGTCGGCGTTGAGAATCTGCGAGAGGCGCCGCTCCCTGGGAGAGCGTGGTTCTGACGCAGTATGGCGGCGGGCCGGTCGGTCGGTTGATCCTGCCGGTGCCGGGGGCCGGGTTGTCCTCGGTCGTGCCGGCCGCAGTCGGGTGGGCGCGAGCGTTGCTTCCGTGCGTGGAGGGTGGTGGTGGGGTGAACCACCGTGGTGCCGGCGGAGATTCACCTCGCGGAAACGAGGCATGGGTGGCATGATGCAACCGAGTGAAAAAGCTGTTACCCGCTGGTAGAACCCCAGGTCATCCGGT # Right flank : CGTACCTGATGCTGTCGGGAACTTGTGAATACAAGGTTGGGTGTGCCGATCGAGTGCCGGTGTGCGGCCGCCTTGTGACAGCACGAGAGGATTCCGGGGTGATGGATCCGACCGAGATGACCGAGCGCGAGTACCTTGCGTTCTTTGCCAAGCGGCCCGGGATGTACATAGGTCGCGTCTCCCTCGCTGGCGTGACTGCGTTCCTGCAGGGCTACGACCACGCCGCCCGGCGGCTCGGCGGGCCTGGCACCGGCACGCCGCCCGCATCGGCGCCAAGCTGGCCCCGCGCAGGCGGGGATTGCTCCTGGCGGTGTCCGCGCACGCCGTCGACCTCGCCGTCGGCCCCGGGAACGCGGGATTGCTCGGCCGAGGCGGAGAAGACGGCCGCGCACAGGCCGCGTCGGCCCCGCGAACACGGGGATGTTCCCGCACCCACTTGCGCGAACGCGCCAACCTCGGCGTCGGCCCCGCGCGAGCGGGGATGCTCCCAGGCCGTTCCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCAGGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 119109-117920 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119108 29 100.0 32 ............................. GCGCACGTCGAGGCCGCGGTGGCCGCCGACGA 119047 29 96.6 32 ............................G GCTGTACCAGGTCTCGCCGAGAGGGCCGGTCT 118986 29 96.6 32 ............................T GGCCCCACTTGGTCGTCGACAACCGTCTCGGC 118925 29 100.0 32 ............................. GGGCGGCTATTTCGCAACCGGCCCCGGCTCGG 118864 29 96.6 32 ............................T GCGTTCACCGCGTGGGCGAAGGCGCGCGGCCA 118803 29 100.0 32 ............................. TTCTCGAACGGCGCCCACACCGAGCTGGTGAC 118742 29 100.0 32 ............................. CGTGGACACGACCGGCACCGCGTTCACGGAAC 118681 29 96.6 32 ............................T TCGATGACGTCGTAGTACTCGGGGGGCCTTTG 118620 29 100.0 32 ............................. GGCATCGCCTCGTTGGCCCTCACCCTCATGGC 118559 29 100.0 32 ............................. CCGCCGCCCGCAACGCCACCCCCGCCGTGGAC 118498 29 96.6 32 ............................T GGTGTCGTCGGGCTGCTCGGTGCGGGTCATCG 118437 29 100.0 32 ............................. CGTGCCGCTGTGTGGCTTCGATGGGGTCGCCC 118376 29 96.6 32 ............................G CCGGCCCCTGACCCAGCGTCAGCCACGACGCG 118315 29 96.6 32 ............................T GTCGAGGACGCCCGAGTCGGCGGGGAGGTCGT 118254 29 100.0 32 ............................. GCGAACCGCAGCGTGATGCACGCATCCACGCA 118193 29 100.0 32 ............................. CTGCGCGTCCGTCCACGGATCCGTGTGCTGCA 118132 29 100.0 32 ............................. CTGAAAGACCAGCGCACGACGCAGACCCGCAT 118071 29 86.2 32 ............A.C.........T...G GGACTCGCAGGCGTCGGGCGCGGCATGACGGC 118010 29 89.7 32 .............AG.....A........ TGGGTGACGGCGCGGCCGTGCTGGACCTGGCG C [117988] 117948 29 82.8 0 A..A......T..A..A............ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.7 32 GTCGGCCCCGCGCGAGCGGGGATGCTCCC # Left flank : TCAGCAGGGCCGGTTCGACCGGGCCGACCACAGCAACCAAGGCGAGGGCGCCTGTGGGACGAGGTGATCGCGGCCTGGTCCCGGTGGACGGACAACGGCCGACCGGCCTTCGACACGTTCGGCCTCGACGTCGCCGCCGACGGCACACAGACCGTGTGGTGCGGCGGGCCCGACGGCCGGTCATGGCCGGTCCCCACGGACGGTTGATCCCGAATTGGTCCCGCGTGTAAGGGCATTGGGTTCATCGACGTTCCCGATGCCCGTAGAGGAATGCGCCGCCGGTCTCGCCGACGGCACGTCGAGGACGGGAGCGGCGATGCCGATGGCTGCGATCCCCGGCTGGCCCGGATCGATTACCACTCGAGAGGCACCGAGGGGGTCGTCGGGTGAACTACCGTGATGTTGCCAGAGATTCACCCCGCCGCAAACGACACGGTGGTGGCAAAATGCAACCGGGCGAAAATGCTGTTACCCACTGGTAGAATCCCAGGTCATCCAGT # Right flank : GACCAGGAGCAGGCGGACGGGAGGAAACGCCTGTCGGCCCGGCGAGTTCCCGACGCCCGACCAGCCCGGAGGTCGGGCGCATCCGGCCTCCTTCCCCAGACAACACCGGAACCGGTCCGGCGTGGACGAGTGTGGTCGATTCTTCTCGGGGGCTTTCTCGGCTGCGGTGTCATTTCGGCTCGTTCCACGTGTCTTGAGGGGAGGGTGTCTTCGCCAGGTGGTTGGCGTGGCGTTGTCGAGCGACGTGGAGCAGTTCCTTGGTGAGGTTGTCGCGGTTGACGCCTCGGGTTTTCAGGGCGTGGCAGTTGGGGCAGAGCGCGATCATCACTTCGGGGATGTCTCTGCCGCCGCGGGCGAGGTCGTGGATGTGGTCGACTTCGAGGATGGGTCGGCCGGCGTCGGTGAGTTCGGTGGGATGGCCGAGGCAGCGTGGGTTCTCGCAGGATCCGGCGCTGCGTTCGAGTACGGCCTGACGGGCACTGCGGCTGCGCGCTCGTTTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 124449-124116 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124448 28 100.0 33 ............................ CTCCATGAACTCCACCGAGACGTTGCTGGTCTT 124387 28 100.0 33 ............................ CATGGTTCCCGGCGATGTCCAGCACTGGCTGCT 124326 28 100.0 33 ............................ CTGGTCGAGGCGGCGCTGGTGTCGCTGGCCGAG 124265 28 100.0 33 ............................ CACCCGGGTCACCGAGCGGCTGTCGACGACGTG 124204 28 96.4 33 .............A.............. GGATGCGGAACAGGGCCTCGTCACCGCAGTGTT 124143 28 82.1 0 ................T.......CCTG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCGGCCCCGCGAGCGCGGGGATGGTCC # Left flank : AGGCGTCGGCCTGGGCGGACAACTCCCCGTCGAGGTTCGTCGACGTCTGGAACGACTACGGCGCCGGCGGCGGCCGCATCTGGAGGATGCTGCCGGGCGCGAGCTCGTCCAACGTGCAGTCGAACGACGCGGCCTCCAGCCTGGACTGCTACTGACGAATCCACCCGTCGGTTGCGATGCGACGGACAGCATCGATTCCGTGAGCACATGGGCCCACCGGCCCGCCCCGAGCAGCGGGCGGGCCGGTGGGCCCACCCGGATCAGCAGGCGTCGAGGATCGACGCGAGGGCGTTCGGACCCACGCGAACGAGTCTGTCCGCGTCGTATCTCGACCCTCGGTCGGGCCGGATCGATCACCGCTCGACAGGCACCGAGGGGGTCGTCCGGGGAACTACCCTGGTATCGACGGAGGTTCATTACGCTGCGGACAACGCATGGATGGCAAGATGCAACCGAACGAAAAGGCTGTTACCCGCTGGTAGACGCCCAGGTCATCCAGT # Right flank : GGCGAGCTACTGCGTCAACTGCGTGGGCACCGACGTCGTCGCATCGTTCCGGTCTGCCAAAGTCGGGAGCGGTACCCGGTGCGTCGTGTTGCCGGGTGTGCCGGCTACCGATCAACCCGGGTGACGGTGCCGCCCTGGACACATGCCCACCACGAGCGTCCGTGGCGAGACCGTCGCCCTGCTCGACACCCTCGACGAGATCCGCGCCAACCTCCCCGAGGAACGCCGCACCGAGTTCGACCGCGTAGTCGGCTCCACCCCGCTGCGGCAGATCGTCCAGCTCGCGATCATGCGGTTTGCGCTTCCGGACAAGGGCCCAGGAGGACGCCGCTCCGGGCGACCGGATCAGGGCAGTCGACTGGACCGGCGTTCACAATCCCGACGGCACCCCCTTCGTGCCGTGACCCACCGGGTGGTGTGGACTGGCGTGGCCGAACACGGCCTGGTGACACCGGACCCGACGGCCGACAGCACGGATCCACGACACCGGGTAGGGGTAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 126785-125961 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126784 28 93.1 33 ....................-.......T CGCGCGGTCCTCGACGAGGGCTTGGAGGTAGTG 126723 28 93.1 32 ....................-.......T GGGCGCGAGTCGATTTACGAGTACGACGTGAG 126663 29 100.0 32 ............................. CTCCCCAGGAAGGGGACCGTTCCCCCGCCCCC 126602 29 100.0 32 ............................. AGCGCGCGCAGGTCGAAGGTCTCGGTGTCCGT 126541 29 100.0 32 ............................. TCCGATGCCGGGTACGCCGACGCCCCGCCCGC 126480 29 100.0 32 ............................. TCCTGGACGTCGTGGGTCGCCTTCGACGTCGC 126419 29 100.0 32 ............................. CTCGTTGCTGACCCGTACCGGTGGGAGGAGAC 126358 28 96.6 32 ....................-........ TCGTCCGGCGGACCCTGCCGCGGGCCGCCCTC 126298 29 86.2 32 G...........CGA.............. GGAGGTCGACAGCAAGGAACGGCTGACCGGCC 126237 29 86.2 32 G...........CGA.............. TGCACAGTGCGCAACCTGTAGCCCGGCGAGTA 126176 29 86.2 32 G...........CGA.............. TACACCGAGGACATGTTCAAGCAGCGCGCCGG 126115 29 96.6 32 G............................ GCGTCCATCAGGTCGGCGAGTCGGTGGTGGGC 126054 29 93.1 32 G...........................G GTGTGGGACCCGGACGACTTCACCAAGGGCGA 125993 29 86.2 0 G...........C.G.............T | GCT,G [125966,125971] ========== ====== ====== ====== ============================= ================================= ================== 14 29 94.1 32 ATCGGCCCCGCGAACGCGGGGATGTTCCC # Left flank : TGGACCGGCACCACCCCAGCCACCGACCGCGTGGCCGGCCCCGACGCCACCCCCGGCGAGGTCCTGGAGGACATCGCCACCGGCCGACGGCGCGTCCCCCTTGCCGACGTCCGCCCCTGGGCCGACCCGGAGTTGGAGGTGTTCATCGACACCGCCATGGCCCTCGACCCCGCCGAACGCACCACGTCCGCGCACGGGGATGCCTTGTCGCGTCGGTGACGCCGAGGCTCCCCGAACCTTCGACGCTCGGGAGCGAGGTCTCGGCGCAGCGCAACGGCGTGCTGGTCGGTCGATCCGGCCAGCGTCGAGGACGGGGTCACCCCGATCGTGCCGACTTCGATCGGCCCGGATCGATCACTCCTTCGACGCACGGAGGTGGTGGTCGGGTGAACTACCGTGTGGTCAGAGGAGATTCACCTCGCCGACGACGACGCATGGGTGGCATGATGCAACCGAGCAAAAACACTGTTACCGGCTGGTAGATGCCCAGGTCATCCAGT # Right flank : CGACGATTTCGGCGCCCGCATACGGGACGCGCCGCCGGTGCCTGCCGACGTCCGCGTCGAAGGCGGAGTCGACACCGATGGCTGCGATCCTTGGTCGACCCGAGGGTCGACCGCCACGTGTGGACGCGGACCCTGTACGACACCCGAAGGTGATCATCCCCGGGCTCCCGGCTGTGTTGCTCCGGCGCCGCGAGTACCCGGCACGGATGATCTCGGAGGGGGTGAATTCCCCGGCGGCCCCGGCTACGCCCGGCGAGAGCGCACCGGCGACCGGGCTGCGATGACACCCGGTCGACGAACGGCACATGCCCGGGCGCAGCGTCTCCTTCACCGGCCGCCGGCGGCACGGAAGAGCACTCCCGGCCGGGCCGGCGCGGTGCCCGCGGGGCGGGGTGTGGGTGCCGGGTGATGAGATGCCTGGGTTGGCAATTGCCTTGTCTGGGGCGGGAGTTCATATCGTGTTTGCTTGCCCGGGGGCGCCGGGTTCGACTTAATGGGTA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGAACGCGGGGATGTTCCC # Alternate repeat : TCGGCCCCGCGCGAGCGGGGATGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 131796-130825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 131795 28 100.0 33 ............................ CAGTGCGCTGACGCTGGAGGCGCTACAGAGCCG 131734 28 100.0 33 ............................ CTCCTGCGGGACGGTCGTCGCCTCGTCCACGTA 131673 28 100.0 33 ............................ CCACCGGTCGCGCCGGTGTGGGGCGCCGACTTC 131612 28 100.0 33 ............................ CTACTCGGTCTGGTGGTTTGCGGGGGATATCGC 131551 28 100.0 33 ............................ TGGGCGGCGGCGTCTGCTTCGGCTGTGCGGCGA 131490 28 100.0 33 ............................ CGGCACCACGGGACTGTTCGCGGCGGGCGGCGC 131429 28 100.0 33 ............................ GACAGCGGGTCTACGCTCCCGGGCTCTCAGAGA 131368 28 100.0 33 ............................ GTCATCCGCGCTGGCACCGATTTCGACGGAACA 131307 28 100.0 33 ............................ CCCAAAAACCCACCTAAAGCGGACAGGAGTCCG 131246 28 100.0 33 ............................ CCGCACGGTGCCCATCACCGACCACCCGCCCGC 131185 28 100.0 33 ............................ CACGACCCGAGCTGAGGCCGTTCCGCGTGAAAC 131124 28 100.0 33 ............................ CCTCCAGGGCTTCGGCAGGCGCAGGACCGCTTC 131063 28 100.0 33 ............................ GGCGTGGCTCGACCTCTGCCGTCGCGGACTCGA 131002 28 100.0 33 ............................ CGTCGCCAGCGCGGGCACCCTCACGCGCATGTA 130941 28 89.3 59 ............C.A......G...... TGCGGGCCGGGTGCTGTCGATTCGCTTCATCGGATCCGGTCCCCTGTTCCCGTTGTTTT C [130917] 130853 28 96.4 0 ...........................G | G [130828] ========== ====== ====== ====== ============================ =========================================================== ================== 16 28 99.1 35 GTCGGCCCCGCGAGCGCGGGGATGTTCC # Left flank : TGACGCCGGAACGATCCGTTTTGCAGGTAGTCGTCGGCCCCGCGAACGCGGGGATGCTCCGCAACGTGGACACGCTGTCTCGCACACGGGGATGTCGGCCCCGCGAACGCGGGGGTGCTCCCAGCGCCCGGAGCGACGTGCCACCGAAATCGGTGTCGGCCCCGCGAACGCGGGACTGCTCGGCTCGGCCGTAAGGATCCGTTCGTGTTGCCTGCGGACACGGCGGGCCCTCTCCACCCGGGGGTGCGCTCCTCGAGGGTGCGATCGGTTCGGCGCATGGCGGCCCGGCTTTCGATCCGTCCGGCGTCGGGAGCGGGGTGGGCCTCGGGGCGTGCGGGGTTCGGCACGGATCGATCGCCGTTTCGTCGGCGCCGAGGGGTGGGTGGTGAACTACCTTGGTGGCGGGAGAGATTTGCCCGGGCCGGAGACAATTCACAGGTGGCAAGATGCAACCGAATGAAAACGCTGTTACCCGCTGGTAGATGCCCAGGTCATCCAGT # Right flank : ACGAACTTGCGAACGCCGGAGGGCAACGAGGGGTTGTTCGGACTCACGCACAAGTGCCGCTCGGTAGCTTTATCCCCGGGGCTCCGGACCTGCTCCATCCTGGAGCCTTCGATTCGGCGGTCGGGCGGGACGGACGTTCGCGTCGGCTCGTTTGGCGGGGTCGGTGGTTCGTGTGTCACGGCCCATTTGCTGTCCGGCCCTGGCTCCCGGTGCCCGATCTTTGGAGGAGAGCGGCGGTGGCGGGCATGCGGGCGTGGGGGCGGAGTCGGGCGCGCATGAGGGCGACCGCGCTGTCGGCCCGTCCGCAGCGCACGTTCGCGTGTTCGTCCAGGAGCGTGGTCCAGGCCTGGCACGCCTCGTCGAGGCGGCCGAGGTCGAGGAGCATCTCGGCGAGGATCCCGGAGGAGACGGCGCGGTGGGTGCGTTCGTGGGTGGGGCGGGCCCGGTTGCTTCGGTCCATGGCGGCGGTCGCGGTCTTGAGGTCGCCGAGGGCGCGGTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAGCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 132569-132114 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132568 28 100.0 33 ............................ CGGCTCACGCGGCTCGCCAAGGACCACGGCGGA 132507 28 100.0 33 ............................ CGAGATGGCGGCGGCGTTCGCCCAGGGCGGGCC 132446 28 100.0 33 ............................ CTGGGCGTGTCCGTTCAGCAACTACGCCCCGGC 132385 28 100.0 33 ............................ CGGGCGTCGCCTGCGGGCGGTGGGGGTGGACTC 132324 28 100.0 33 ............................ ATGACGCCGGAACGATCCGTTTTGCAGGTAGTC 132263 28 85.7 33 ............AAC.........C... GCAACGTGGACACGCTGTCTCGCACACGGGGAT 132202 28 82.1 33 ............AAC......G..C... CAGCGCCCGGAGCGACGTGCCACCGAAATCGGT 132141 28 75.0 0 ............AAC.....AC..C..G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.9 33 GTCGGCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACGAGTCGGCCCCGCGAACGCGGGGATGCTTCCCACCAGTGATCCTGGCGTGGAGGAGTGTTCTCGTCGGCCCCGCGCGAGCGGGGATGCTCCCAGGGTGTTGTAGCGCTCGAGCAGGTGCGAGGCGTCGGCCCCCTCGCGCAGCGCAGGGGCGGGCCGGTCGGTCGATCCGGCTGGTGTCGAGGGCGGGTTCACCCTCCCGATCGTGCGGGGCACGGCCGGTCCGGCGCGGGCGTCGCTTCCACGCGCGCAGTCCGGGTGCCGGGGCGCAGCGGGAAGCCGGTGGTTCGCTCCGGACGCTGTCGAGGACGGAATGTGCTCCGACCGTGCCCGCCTCGGCCGCTCCGGGTCGAACGACGCTTCGCCGCACGGAGGGCAGCGCTTGGGTGAACTACCGTGGTCTCGACGGAGATTCGGGTCATCGAAGACGACACATGGGTGGCGAGATGCAACCGAATGAAAACGCTGCTACCGAATGGTAGATGCCCAGGTCATCCAGT # Right flank : GCTCGGCCGTAAGGATCCGTTCGTGTTGCCTGCGGACACGGCGGGCCCTCTCCACCCGGGGGTGCGCTCCTCGAGGGTGCGATCGGTTCGGCGCATGGCGGCCCGGCTTTCGATCCGTCCGGCGTCGGGAGCGGGGTGGGCCTCGGGGCGTGCGGGGTTCGGCACGGATCGATCGCCGTTTCGTCGGCGCCGAGGGGTGGGTGGTGAACTACCTTGGTGGCGGGAGAGATTTGCCCGGGCCGGAGACAATTCACAGGTGGCAAGATGCAACCGAATGAAAACGCTGTTACCCGCTGGTAGATGCCCAGGTCATCCAGTGTCGGCCCCGCGAGCGCGGGGATGTTCCCAGTGCGCTGACGCTGGAGGCGCTACAGAGCCGGTCGGCCCCGCGAGCGCGGGGATGTTCCCTCCTGCGGGACGGTCGTCGCCTCGTCCACGTAGTCGGCCCCGCGAGCGCGGGGATGTTCCCCACCGGTCGCGCCGGTGTGGGGCGCCGACTT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 134345-132976 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134344 28 100.0 33 ............................ CGGGAGGTCGACGAGCAGACCGCCGACGAGGTC 134283 28 100.0 33 ............................ CGGTCTCCCGGTGATCACGGCGCTGTCGGAAAT 134222 28 100.0 33 ............................ CCCCCCGATCGAGTGCATGTGGGCCCTAGCGAC 134161 28 100.0 33 ............................ CACGGAAACCCTCGACCGCGAACTCCGCGACCT 134100 28 100.0 33 ............................ CGCGCGATGGACCGCACCGGCCGCCTCGTCGAA 134039 28 100.0 33 ............................ CCGCGCCCCGGCCAGGGCCTCGAGGTGGCCGTG 133978 28 100.0 33 ............................ GGCGACCGCACTCCTCCGTGCGGATGGACTCGT 133917 28 100.0 33 ............................ TCATCCGCCTGTCGAAAAGCGCCGGACACCGGA 133856 28 100.0 33 ............................ TCGCGTCGGCGATGCCCTCTGCGGTCAGTCGGT 133795 28 100.0 33 ............................ CGTCGTCGCCGTCCTCGCCCTCTCCGCCCTCAC 133734 28 100.0 33 ............................ CCGTCGGCGACAAGGCTCCCTTGTCACCGTGTT 133673 28 100.0 33 ............................ CCGGGGATCGCCACCCTGCGCCGGCGAAGGGCC 133612 28 89.3 33 ...........GAA.............. GGCGGCCAGTGTGTCGAGGTCGCCGAACTGACC 133551 28 89.3 33 ...........GAA.............. TCTCCGCACGAGTGCCAGGAAGGCGGTCCCGTA 133490 28 89.3 33 ...........GAA.............. CCGGACGTAGTACCGGTAGCCGCGTCGCATCCC 133429 28 89.3 33 ...........GAA.............. CATCGACCACACCCCCGCCGCCGACATCGCCGC 133368 28 89.3 32 ...........GAA.............. CCCCACCGCGGCGAGCACTACGTGACCCACGC 133308 28 89.3 33 ...........GAA.............. CTGGTCTCGGCCACCGTCGCCGACGTCCAGGAC 133247 28 89.3 33 ...........GAA.............. GTTGGGCTACTCCGGTTCCGATGCGGATGGCCT 133186 28 89.3 33 ...........GAA.............. TCGGTGTCTCAGGGGGTTTTCACGGGGTGGACC 133125 28 89.3 33 ...........GAA.............. GCAGGAGGCCGTGCGTCTCGGCGTCCGCGACGA 133064 28 85.7 32 ...........GAA..........C... CACCAGTGATCCTGGCGTGGAGGAGTGTTCTC T [133038] 133003 28 85.7 0 ...........GC.A.........C... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 94.6 33 GTCGGCCCCGCAGGCGCGGGGATGGTCC # Left flank : ACGAGGTCGCCGCGGGCCTACCGCCCGAGGTCCTGGCCGCCGTCGAGAAGGCGGCCGCCGATCTGGCCACGGTCAATTCCATGGTCTACCTCGACGGGGTCGACTTCCGGGGTACCGGCCCGGGCGTCCGCACCCACAGCGACCCGGCTCGCAACCTCCTCTTCGAGTACCTCACCGTTCCCCGCCGGGAGTGCATCTACATCACCCAGGTCACCTGGCTCGGAACCTGACTCCCGAACCCACATCGCCACCACCTCACAGCGCGGCACGCGAAATCCCCGGCCGACAGCGTTCTTACCACCGCGTGTCGAGTCGGGAGACCGGCCACGCCCACTCGTGCGTCGGTGACCAGCGTCCGATGCGGGTGACACGGAGGCCGGCGCCCGGATGAACCACCTTGATGTCTGCGGAGATTCGCCCGCCGAAGACGACGCATGGGTGGCAAAATGCAACCGATCAAAAACGCTGTTACCTGCCGGTAGGACCCCAGGTCATCCAGT # Right flank : CAGGGTGTTGTAGCGCTCGAGCAGGTGCGAGGCGTCGGCCCCCTCGCGCAGCGCAGGGGCGGGCCGGTCGGTCGATCCGGCTGGTGTCGAGGGCGGGTTCACCCTCCCGATCGTGCGGGGCACGGCCGGTCCGGCGCGGGCGTCGCTTCCACGCGCGCAGTCCGGGTGCCGGGGCGCAGCGGGAAGCCGGTGGTTCGCTCCGGACGCTGTCGAGGACGGAATGTGCTCCGACCGTGCCCGCCTCGGCCGCTCCGGGTCGAACGACGCTTCGCCGCACGGAGGGCAGCGCTTGGGTGAACTACCGTGGTCTCGACGGAGATTCGGGTCATCGAAGACGACACATGGGTGGCGAGATGCAACCGAATGAAAACGCTGCTACCGAATGGTAGATGCCCAGGTCATCCAGTGTCGGCCCCGCGCGAGCGGGGATGGTCCCGGCTCACGCGGCTCGCCAAGGACCACGGCGGAGTCGGCCCCGCGCGAGCGGGGATGGTCCCGAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCAGGCGCGGGGATGGTCC # Alternate repeat : GTCGGCCCCGCGAACGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 136658-136020 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136657 28 100.0 33 ............................ CACGATCGCGTGGATGTGCGGATGCCACCCGGC 136596 28 100.0 33 ............................ GCCGGAGGTCCTGCGACGGGCTGGCCGGCGGGT 136535 28 100.0 33 ............................ CCACTGGCTGAACTTGGTGCGGACCCGGTACGG 136474 28 100.0 33 ............................ GACCTCGAGGGACACCGTTCGCATCACCCTCGG 136413 28 100.0 33 ............................ TTCGGCGCGCTCCCCGTGGTGTTCCAGCGCAAG 136352 28 100.0 33 ............................ TGGCCGGGATCCTCGTCACGGACGACCCGAACG 136291 28 100.0 33 ............................ CGCCATGGCCTGGAGATGAGCGTAGGCGAGCGT 136230 28 100.0 33 ............................ CGGTGCCCGGCGACTGCGCGAGGCCATCTTCAG 136169 28 100.0 33 ............................ TCCGGGTGGTCGAGGATCTCGCCCGCCGGATGG 136108 28 100.0 33 ............................ CCCGGTGGGTGCATCGCGGCGCGTGGCGCCACG 136047 28 85.7 0 ..........T............T.GG. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 33 ATCGGCCCCGCGAGCGCGGGGATGCTCC # Left flank : TACCGGTCGGCTCCGCGAGCGCGGAGTTGGTCCGTGGAGGAACGGGCGTCCTCGAGGTCCGGTCGTCGGCCGCGCACCGGCGGGCTTGTTCCGGCGTCGGCGTCGAGGGTGGAGTCGCCCTCGGATGTTCCTCTGCGGGCCGCGCACGGGTGTAACTCGGCGTCGACCTCGCGCGGCTGGGGTGATCCTGCTCGGTGGCAGGTACGGCCGTCGGCCCCGCAGGCGCGGGGATTCGGTTCCTCGACGTTCTCCGCGCCCGCGTACGCAACGCGCCGCCGGGTACTCGCCAACGTCCGCGTCGAGGACGGAGCCGACGCCGACGGCCGCGACCCTCGGCCGACCCGGATCGACCGCCGCTCGACACGCACCTCGCGCGAGCCGTCGGGTGAACTACCTTGGAGTCGCCGGAGGTTCGCCTCCGCTGCGGACGACACACGGGTGGCAAGATGCAACCGAACAAAAACGGCGTTACCCATTGGTAGACACCCAGGTCATCCAGT # Right flank : TCTTCGACGTTCGCGGTGCCCGCGTACGCAACGCGCCGCCGGTACTCGCCGACTTCCGCGTGGGTGGAGCCGACGCCGACGGCCGCGACCCTCGGCCGACCCGGATCGACCGCCGCTCGACACGCACCTCGCGCGGTCCGTCGGGTGAACTACGGTGGAATCGCCGGAGGTTCACCGCACCGTGGACGACACATAGGTGGCAAAATGCAACCGAACGAAAAAGCCGTTATCCGCTGGTAGACATCCAGGTCATCCAGTGTCGGCCCCGCGAACGCGGGGTTTGCCCCGACATGACGCTCGATTCCGCCGCGTACGTGATGTCGGCCCCGCGAGCGCGGGGATTGCTCGCCGTTCGAGACGCACCGCAAATCGCCGAACCGGTCGGCCCCGCAGGCGCGGGGATGCTTCCGAACGTGAGATGTACCCACCAGCCGGCGGTTGCGCGCAGAACTCGGCGTTGGCTTCGTATGGGCGTCCCGTTCGTTCGACAGCGGTCACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGAGCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGAGCGCGGGGATCCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 137529-137189 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 137528 28 100.0 33 ............................ CGCCCGCACCGTCACCATCTGCGCACCCGAGTA 137467 28 100.0 33 ............................ CGACCGTGCGCGGCACGTACCTGATCGTCGCGG 137406 28 100.0 33 ............................ GCCGATTCCGTTCGGACAGGACGCCCGTGCGAA 137345 28 100.0 33 ............................ AGCATCGCGGAGTCGGCCCCACCACCTACATGA 137284 28 100.0 40 ............................ ATGTTCCCGGCGGAACGGGGCCAGTCGACGTGTACGACGC 137216 28 71.4 0 ............A.G......G.AATTC | ========== ====== ====== ====== ============================ ======================================== ================== 6 28 95.2 35 GTCGGCCCCGCGCAAGCGGGGAGCGGGG # Left flank : TTCCTGCGTTTCCCCAGGTCAGAGGACCCGCAGTCGGCCCCGCGAACGCGGGGATGGTCCCGATGGCCGGCGACACCAAACCGCGCGTGACCGGTCGGCCCCGCGAACGCGGGGATGGTCCCGGGCTCGCGCTGTATGCGGCCCGCAGCCACTAGTCGGCCCCGCGAACGCGGGGATGGTCCCGCGCGGCGCTGGTCGAGGCGGAGCGCCACGACGTCGGCCCCGCGAACGCGGGGATTCGGTTCTTCGACGTTCTCGGCGCCCGCGTACGGAACGCGCCACCAACGCTCGTCGACGTCCGCGTCGAGGGCCGAGTCGGCGTCGATGGCTGCGATGCCCGGTCGGCCCGGATCAGTCGCCGCTCGACGAGCGCCGAGGATCGTTGGGTGAACTACGGTGGTGTCGCCGGAGGTTCATCTCGCCGTGGACAACGCATGGGTGGCAAGATGCAACCGAACGAAAACGCTGTTACCGACTGGTAGAACCCCAGGTCATCCAGC # Right flank : TCCTCGGTCGTCCAAGCGAACGCAGGGCATGTACCGGTCGGCTCCGCGAGCGCGGAGTTGGTCCGTGGAGGAACGGGCGTCCTCGAGGTCCGGTCGTCGGCCGCGCACCGGCGGGCTTGTTCCGGCGTCGGCGTCGAGGGTGGAGTCGCCCTCGGATGTTCCTCTGCGGGCCGCGCACGGGTGTAACTCGGCGTCGACCTCGCGCGGCTGGGGTGATCCTGCTCGGTGGCAGGTACGGCCGTCGGCCCCGCAGGCGCGGGGATTCGGTTCCTCGACGTTCTCCGCGCCCGCGTACGCAACGCGCCGCCGGGTACTCGCCAACGTCCGCGTCGAGGACGGAGCCGACGCCGACGGCCGCGACCCTCGGCCGACCCGGATCGACCGCCGCTCGACACGCACCTCGCGCGAGCCGTCGGGTGAACTACCTTGGAGTCGCCGGAGGTTCGCCTCCGCTGCGGACGACACACGGGTGGCAAGATGCAACCGAACAAAAACGGCGT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCAAGCGGGGAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 11 138241-137783 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFH01000034.1 Embleya hyalina strain NBRC 13850 sequence34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138240 29 96.6 32 ............................T CGCAGCACTATCTGGGGGCCGACCTGCGGATC 138179 29 96.6 32 ............................G ATGATCTGGCCGATGTCGTCGGGCGACGGCAA 138118 29 100.0 32 ............................. AGACCCCTCCCGCCCCCCGACTCGTACCGGCC 138057 29 100.0 32 ............................. TTCCTGCGTTTCCCCAGGTCAGAGGACCCGCA 137996 29 100.0 32 ............................. GATGGCCGGCGACACCAAACCGCGCGTGACCG 137935 29 100.0 32 ............................. GGGCTCGCGCTGTATGCGGCCCGCAGCCACTA 137874 29 100.0 32 ............................. GCGCGGCGCTGGTCGAGGCGGAGCGCCACGAC 137813 29 93.1 0 ..........................T.T | CT [137789] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTCGGCCCCGCGAACGCGGGGATGGTCCC # Left flank : ACCCCGACCTGATTCCCGCCCCGCTCCTGGCCGAGATGCGCCGGGCCGCGGTCGAGGACCCGAGCGTGGTCGCGGTTACGAACGAGTTCGCTGGCAGCGACTACGCTCGCCGCGTTTACGGACCGGGCCTGTACGCCCGCGCAATGCACCTGGCTACGTCCAGGACCGTTAGTCTCCACGGGATTGGCGCCAGCCGATAAGCACCCGACCGAAATCACCCGCCCTCTGACCTACGTCACCCATGTCGACGACCGCGATCCGCAATCCCTCGGTGGGGTCCTCAAGCAGCGGCTGACTGGAGGGGGATGGATCACCCGGTCGCTGGTGGCACTATCGCTAGCCACGGGCCGCGAACCCTCAAGCACGCCGACAGGGGCACCATCGGGTGAACTACCGTGGTGTCACCGGAGGTTCAGCTCACCATGGACGACAACATGGGTGGCATGATGCAACCGAACGAAAACGCTGTTACCGACTGGTAGACCCGCAGGTCATCCAGC # Right flank : TCGACGTTCTCGGCGCCCGCGTACGGAACGCGCCACCAACGCTCGTCGACGTCCGCGTCGAGGGCCGAGTCGGCGTCGATGGCTGCGATGCCCGGTCGGCCCGGATCAGTCGCCGCTCGACGAGCGCCGAGGATCGTTGGGTGAACTACGGTGGTGTCGCCGGAGGTTCATCTCGCCGTGGACAACGCATGGGTGGCAAGATGCAACCGAACGAAAACGCTGTTACCGACTGGTAGAACCCCAGGTCATCCAGCGTCGGCCCCGCGCAAGCGGGGAGCGGGGCGCCCGCACCGTCACCATCTGCGCACCCGAGTAGTCGGCCCCGCGCAAGCGGGGAGCGGGGCGACCGTGCGCGGCACGTACCTGATCGTCGCGGGTCGGCCCCGCGCAAGCGGGGAGCGGGGGCCGATTCCGTTCGGACAGGACGCCCGTGCGAAGTCGGCCCCGCGCAAGCGGGGAGCGGGGAGCATCGCGGAGTCGGCCCCACCACCTACATGAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGAACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //