Array 1 96154-95392 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYY01000007.1 Escherichia coli strain KS-NP065 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96153 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 96092 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 96031 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 95970 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 95909 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 95848 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 95787 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 95726 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 95665 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 95603 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 95542 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 95481 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 95420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113270-111655 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYY01000007.1 Escherichia coli strain KS-NP065 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113269 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 113208 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 113147 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 113086 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 113025 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 112964 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 112903 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 112842 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 112781 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 112720 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 112659 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 112598 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112537 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112476 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112415 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112354 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112293 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112232 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112171 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112110 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112049 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111988 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111927 29 96.6 32 ............................A CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111866 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111805 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111744 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111683 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //