Array 1 101349-100100 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOD01000003.1 Salmonella bongori strain BCW_1556 NODE_3_length_174771_cov_1.70938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101348 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 101287 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 101226 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 101165 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 101104 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 101043 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 100982 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 100921 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 100860 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 100799 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 100738 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 100677 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 100616 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 100555 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 100494 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 100433 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 100372 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 100311 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 100250 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 100189 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 100128 29 79.3 0 .....................C.TTTA.T | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118396-117330 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOD01000003.1 Salmonella bongori strain BCW_1556 NODE_3_length_174771_cov_1.70938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118395 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 118334 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 118273 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 118212 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 118151 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 118090 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 118029 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 117968 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 117907 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 117846 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 117785 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 117724 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 117663 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 117602 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 117541 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 117480 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 117419 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 117358 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //