Array 1 159557-155258 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLX01000005.1 Citrobacter amalonaticus strain S1285 scaffold5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159556 29 100.0 32 ............................. CATTTGCGCAATTAGTTCCACCGCAGATTGTT 159495 29 100.0 32 ............................. GGTATAGCCGGAACGTACTGCAAAACAAAATA 159434 29 100.0 32 ............................. AACCTTTGACGATTCTCTTAGGTTCCAGCATG 159373 29 100.0 32 ............................. ATGATGAACATGTTCACGGATGACATACTTCC 159312 29 100.0 32 ............................. CGCAGAACTGGTTACATGGTCACGCTGACGTA 159251 29 100.0 32 ............................. ATATCGCAAGAATAACTACCCTTTCCTTCCAA 159190 29 100.0 32 ............................. CGTCTGGTGTTTGTGTTGGTTTTGTTGTCGAC 159129 29 100.0 32 ............................. ATTTAAACATTGTATTATATATTTTAGGGCGC 159068 29 100.0 32 ............................. TTTTCGCAGTATCGCTACCGTTATCCCCAGCA 159007 29 100.0 32 ............................. CGTCATGCGGTGTCGTTGATGTGCGCAACGTG 158946 29 100.0 32 ............................. AAAACGCGCGTAAGCAGCGCGATCTGGCTCAA 158885 29 100.0 32 ............................. GCTGGCACGGGCAGGAACCGGTCCAGACTGGT 158824 29 100.0 32 ............................. TCCATCTGTGACGAATCGCTGTTTCCGACAAT 158763 29 100.0 32 ............................. TTACATTGAATTTGTCCTCTCTCAGAACGACA 158702 29 100.0 32 ............................. CCAGCAACATGATGCGCGATGAACGCATTCAG 158641 29 100.0 32 ............................. CAGTAACTATTGGAACCCATTGACGCGTAACT 158580 29 100.0 32 ............................. AACCTGATTCTGTCTTATATCTATGTCGGGTA 158519 29 100.0 32 ............................. ATTTAAAATTGCTGGGTCGTGGCTGCAATGAC 158458 29 100.0 32 ............................. TTCTTGTTACTGCATATATTTTTGAGGTTCAG 158397 29 100.0 32 ............................. GGTGATTTCCAGATCCGGGCGCACACGGATTT 158336 29 100.0 32 ............................. CGGCTTACAGGCTCAGGAGAGCCGGAACAACA 158275 29 100.0 32 ............................. ACGGTTTCATGTTTCTGGTGATGGGTTTTACC 158214 29 100.0 32 ............................. AATACCCAGCCTACCCTGGGTTGCCCGACACG 158153 29 100.0 32 ............................. AAGGCCGCCAGGTTGAAAGAGGCATACATCGC 158092 29 100.0 32 ............................. TTCATAAAACTCGGTCTGATGACTTCCCACGT 158031 29 100.0 32 ............................. ATGCTGACCGAGCGGGCCGACGCGATGGACGA 157970 29 100.0 32 ............................. CTCACAGAGCCCGTGCGCCAGCGTATAGAAGA 157909 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 157848 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 157787 29 100.0 32 ............................. CGGTATGATGTGATCAACGTCTATTGCTGGTA 157726 29 100.0 32 ............................. ATGATTCGTGCAACTCATAAAACCCCGCTGGG 157665 29 100.0 33 ............................. CCCTTGTTATGCAGATCCATGACGTACTCACTG 157603 29 100.0 32 ............................. GCGAACAACCAACTGGCAGGTATCAGAATGGT 157542 29 100.0 32 ............................. CGATCGAGGCGGGGAAAGAAGTTAAAGGTGCG 157481 29 100.0 32 ............................. TTACTGCAGCAGTTGTGACATACGTCACCTGG 157420 29 100.0 32 ............................. TCTATACTGCTCACTGGTATTCAGTCGGCATG 157359 29 100.0 32 ............................. CCCCTCCATCACGCGGGGCTTTCTTTTGCCTG 157298 29 100.0 32 ............................. CTTTGACGGCACCACCCGTTTCAACGGGGAAA 157237 29 100.0 32 ............................. ATGACGACTGTAACTATCAGGAAAAAGCGGCT 157176 29 100.0 32 ............................. CACCCTCGTTTTTTCTTTGTGACAGGCGTGAA 157115 29 100.0 32 ............................. GCTTCGTCGGGACTACTTAGATCGCGGGATGT 157054 29 100.0 32 ............................. GCTTGTCGATTACTATACGAAAATGTTATCCA 156993 29 100.0 32 ............................. CCCACAGTTAGCTATTTGTCGCGCCCTGGCAT 156932 29 100.0 32 ............................. CCGTCCGGAGAACTCAACATCGAGGGTCTGCC 156871 29 100.0 32 ............................. CGATTGCCGCTCAGGTGGCAGATGAATACCAG 156810 29 100.0 32 ............................. GCAATTGTAACTAGTGGTATTTTTGAAATCCA 156749 29 100.0 32 ............................. ACATATTCATCGTAGTAGCCACATACAACAAC 156688 29 100.0 32 ............................. GCTATATGCGTATTTGCAAAAGCGCAGGTACA 156627 29 100.0 32 ............................. CCGAGCCAGTGCAGCCATGCCTTCGCTACGTG 156566 29 100.0 32 ............................. GGTGTTGTATCTAAAATATCAATGTCGCGTAG 156505 29 100.0 32 ............................. ACTTTATTTTTCAATCCATGATTCGGATGAAA 156444 29 100.0 32 ............................. ATAATATAACTTCATATATTCAAACTAGCGAA 156383 29 96.6 32 ............................T CACACATGGACGCGGGAAAGCAGCGCCAGGAC 156322 29 96.6 32 ............G................ CCCCTTCCCAACCTTGGCGCGGGCAGTCCCAA 156261 29 100.0 32 ............................. TTCGGTGATTTCACACGCACCCGCCCAAATAC 156200 29 96.6 32 A............................ AGCATCGGCATTAGAAATGGCAAGACCTGTAG 156139 29 100.0 32 ............................. CCAGTAAAATCCACAAAAGGCGCACCGAAATC 156078 29 96.6 32 .............T............... CAGAACGCTTCCCCGGGGACGTTCCTAAAAGT 156017 29 100.0 32 ............................. CGCCGGACCTCAGAGAACCGGCGCATGTTTAC 155956 29 100.0 32 ............................. TTTATCTAAACGAGAATCATGAGACATTTTAA 155895 29 100.0 32 ............................. TATCTGCTGTTTGGATTCTGGTCCGTTACCAT 155834 29 100.0 32 ............................. AAATCTCCACCGTTAATATTTCCGTTGTTGGT 155773 29 100.0 32 ............................. TTGTAGAGGAAATCGGGATCACGCTCGTCACG 155712 29 100.0 32 ............................. CTGAATATTCAACGATAACAGCATCAGGAAAT 155651 29 100.0 32 ............................. GGTACGGAACATACTCCGTTGGATAATCATAC 155590 29 96.6 32 .............T............... CCAATCGCGGTAGCAAAAGTCCCGGTTTGAAC 155529 29 100.0 32 ............................. AGAGAGATCGGGCAGCGATTGCAGCAAAAGAG 155468 29 96.6 32 ............T................ CGGGTTTTGAGTCCACGGTATGACCGCAATGA 155407 29 100.0 32 ............................. CGGGCGCTGGTGTGCTATCCGCTGAATATCGT 155346 29 100.0 32 ............................. CCGCGAAAGCGGCTTGAAGGGCGATCTTTAAA 155285 28 89.7 0 ...........A..C..........-... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTGCTGGCTGCCGGGGAGATTGAAATCCCTAAACCTTTTGAAGATGCCCAGCCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGTAATGTTGTCATGGCCTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCACCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : CGAATGAAGTCTTTTAACCAAAATTAAGACGCTTTCTCTGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATAATGCGCACTACGTCGCGGCTGCGGCGCTCAATTCTGTCGGGTAGCGCTTTGTCGATATGCTGCTGGTTATCCAGACGCACGTCGTGCCAGCTGTTCCCTGCGGGGAAGGCGGTGGTCCGGGCAAGCTGCTGATAACCGTCTTTCTTGCCCAGCCCCCAGTTGGTGGCCTCGACGGACAGCACCGAAATCCCGGCTTTATCAAACACCTCTGCGTCGTTACAGCAGCCCGTCCCTTTCGGGTAGTCCTTGTTCAGTCCTGGGTTTGTGCTGGCGGCGATGCCGTGGCTGTGGGCGATTTTCAGCGCCCGGTCACGCGTTAATTTCCGCACCGCTTCCGGCGTATTCTGCCCGCTGTTGAAATAGAGTTTGTCACCCACGATCAGATTATCGAGGTTGATCACCAGCAGCGTGTTTTTCTTCTCTGTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18368-17981 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLX01000002.1 Citrobacter amalonaticus strain S1285 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18367 28 100.0 32 ............................ TAATCTGATGAGGCTTAATCATCTGTTCTTCG 18307 28 100.0 32 ............................ AATGACTGAGGAGCGGAAAAATGGCAACGGAT 18247 28 100.0 32 ............................ TTCGACTTTGCGGATAACGTCGTCTTTGCTGT 18187 28 100.0 32 ............................ AAGACGAACCGTTGCAACTTTTGCAAAATAAC 18127 28 100.0 32 ............................ ATAGCAACAGAATCAGCCTCTAATGCGGCCTG 18067 28 100.0 32 ............................ TCTGTTGCAGTGGACGTATGACGAGGTGGTCG 18007 27 78.6 0 C...........G.......-..G.C.G | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTTAACCGCTGGCCTGGGCTTAGTCTTCGCGCCGGGAAGCATGTACATCGCTGGGTGCTGTTTGGACCGGAAGGCGCAAAAGCTGACGTTCAGTTCACACCCCGGTTTATTACCACTGACATGCTGGCGCTGCGTGAAGCGGCGGTTGCCGGCGTCGGGGTGGTGCAATTGCCGGTGTTGATGGTAAAGGAGCAACTTGCCGCAGGCGAGCTGGTCGCACTACTGGACGGCTGGGAGCCGGGAAGAGAAGTTATCCATGCGGTATTTCCTTCACGGCGAGGGCTATTGCCCTCTGTGCGCACGCTGGTGGATTTCTTAACGGAAGAATATGCGCGTATGGTGGAGGATTAAAAGAGAAAGTGGGATTAACCCTTTTTTGAATGCATAACTTAACGCATTGATTTTAAAGTGGTTTTATTTTCGGGCTGAAAAAGGGGGTTGTCAGTGAAATTCTGGACTTTTATCGAAAAATCAAAAAGGTAGTCTGTTATTATTTCA # Right flank : TAAAATTTGAGGTACAAAAAAGGCCGGAAGAACCGACCTTTTACTATCTGTACGCCATTCGGGCGTGAAAACAAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATATAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGCACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTTAATAAGTAAAGATTTGTGCGTTTAAAACGCAGCAAATGAAATTTGGCGCATTACTCCGAAATTCTCCAAAAGCACACGGCAAAGCCGCACTTGAAGCGCAACGTATTAAGGGAGCGATGAGATAAACGATGGCGTTACCTGACGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30796-29926 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQLX01000002.1 Citrobacter amalonaticus strain S1285 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30795 28 100.0 32 ............................ TGGCTAAAGAAACTGTTTTTCCGGTTCTGAAG 30735 28 100.0 32 ............................ TGTCAGGTTGCGCATATCAGCCTCCGTTCGAG 30675 28 100.0 33 ............................ GCAAAAAGGCGCATTAAAAAAGAATGCTGAATT 30614 28 100.0 32 ............................ CCATGCACGAATCGGCGGCGACCTGAAAACCA 30554 28 100.0 32 ............................ ATAAACCTCATAAACCATTTGCGCGTTTTCAT 30494 28 100.0 32 ............................ AGTAACAGTCAAATCACCATCGATTTCATATT 30434 28 100.0 33 ............................ AGCACCTCGGCTACATCCTTCGCCACAAACCAG 30373 28 100.0 32 ............................ CCTTTAACTAATTAAAAATTAAGATGCTTTGG 30313 28 100.0 32 ............................ TCCGGACAGTTGTGTTTGTGTCCGTTGTACGT 30253 28 100.0 32 ............................ TTTACGACAAGCGCCGCGCAGATGAAGTTATG 30193 28 100.0 32 ............................ GGACGCAGCACGCGGCAAAAAATCGGCTTAAA 30133 28 100.0 32 ............................ AAAAGCGCCTGGCGCTAACCGAGCAGGAAATC 30073 28 100.0 32 ............................ TAAATCGTGGTTTGACTCTCAGTCAGACGAAA 30013 28 100.0 32 ............................ TGGAGGGTGGCGCGGTCTGCTGCGATGATAGC 29953 28 82.1 0 ..G.....................TTTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGCCAGGAAGCGCGTAACTGGCTGGCGGAGAAGGGTTACGATCGGGCAATGGGCGCACGTCCGATGACGCGTGTGATTCAGGACAACCTGAAGAAACCGTTGGCGAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGGCAGGTTACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAGAAGCACAAGCCGGAAACTGCACATTAATTTTTACTCCCGCGCCTGACGTTGAACTTCAGGCATCGTTAAAATCCGTAACCTCTTTTGAGGCTACGGATTTTTTTTTATCCCATGTTCAAAGACTGACGGGCCAGGCGCTCAGTGTCAGCAGCGGATCTGTCAGCGACCCTTTTTTTAAGCCAGATTGTAATTTATTGATTTCTTGAAGAAAAACAGAATGGCGATAAAAAGGGTCAGGCGCATATTTATTGATATTTATCTTTATCGACAACGGTATAGCCATGTAATATTCCA # Right flank : TCCTTCTGGATGATAATGCCTGGGATTGATATTTACGGCATGGATAATTTATTTATTACATTATTCATAAAATAACATTCATATTTCATATGAGCAGAAAGATAAAGTTTGCCAGTTATTGGTTTGTTGATTTTTGTCAATTTCAAAATTAAGTTCGATTCTGTACTATCGTTGCAATCCCGTCTTACTAATTATTATTTGAATAAATATGTCAGCGAATTTAATCACGCCAACGGATCTTAAAACCATTCTGCACTCGAAAAGAGCGAATATTTATTATCTTGAAAAATGTCGAGTGCAGATTAATGGTGGGCGCGTTGAATATGTGACGAGTGCTGGCAATGAATCTTATTATTGGAATATTCCAGTCGCGAATACGACGGCGATTATGTTGGGAATGGGGACTTCCGTTTCTCAGGCCGCAATGCGCGAGTTTGCCCGCGCTGGCGTCATGGTTGGGTTTTGTGGTACGGACGGCACGCCGCTCTATTCGGCCAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //