Array 1 809378-809145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 809377 32 100.0 34 ................................ AGTTTTGGCGAGTTATAACACGCTACTGATCCTA 809311 32 96.9 36 ................A............... TCTGCCATTTAAACGCTCCTTAAATCGTGTTTAAAA 809243 32 93.8 35 ..........G..A.................. ATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTT 809176 32 71.9 0 ......T..A..AC....T...CGC......T | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 90.7 35 GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTAGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAAAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAATATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGGTTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCACATCTTATGTTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCGCAATGCGTTGAAATATAGGGA # Right flank : GTTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCGTTGGATAGCCATCCAACTATCACTAAATTACGCATTCTTTCCCGCCATCAACAGCTATTGCGTTTAGACTTTGAAGAAGGTTTTCATAATGTTGATAGTAGTGAG # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 819547-817913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 819546 32 100.0 35 ................................ CAAAGGTGCTATTGTACTTAGTAGCAAGTCAATTC 819479 32 100.0 34 ................................ TAAGCAATTATAAAGAAAGAATAAAAGACGTTGC 819413 32 100.0 37 ................................ ATCACCGTCCAACTTACCTTTGTTGAATGCTTGTGAG 819344 32 100.0 34 ................................ TAATATGCCCTTGCATAAATTCCACTTTGCCGTG 819278 32 100.0 34 ................................ CTGCCGAGTAATAAGCCAAGCAGAATTTCAAGCA 819212 32 100.0 34 ................................ TTGTGAACATCGAGCAAAATATCGGTCATTGCAC 819146 32 100.0 35 ................................ ATATTCTTCCGCCCGCTGTGTTTCTTCTGTACCGC 819079 32 100.0 35 ................................ ATCATAAGTGGCTTTACGAGTGGCTCTTGGCTCTT 819012 32 100.0 34 ................................ CCTAGCCCCCAAGCACCTTTGGCAATAGTCTGTG 818946 32 100.0 34 ................................ GAGATTTAGTAATTGCTCCATTGAAACGTGGAGA 818880 32 100.0 34 ................................ TTGTGAACATCGAGCAAAATATCGGTCATTGCAC 818814 32 100.0 35 ................................ ATATTCTTCCGCCCGCTGTGTTTCTTCTGTACCGC 818747 32 100.0 35 ................................ ATCATAAGTGGCTTTACGAGTGGCTCTTGGCTCTT 818680 32 100.0 34 ................................ CCTAGCCCCCAAGCACCTTTGGCAATAGTCTGTG 818614 32 100.0 34 ................................ GAGATTTAGTAATTGCTCCATTGAAACGTGGAGA 818548 32 100.0 37 ................................ GTGCCGAGACTTGCCGGTGTATCGGTCACAGCTAAAC 818479 32 100.0 36 ................................ ATAGCCGCCCAGCTCCTTAATCTTATCCAGCGACAT 818411 32 100.0 35 ................................ AAATTATGCCTTAATAATACTTTAAGTTTTTAAAA 818344 32 100.0 35 ................................ TCTTCTGAGCTTTCCAGGCATTAAAACCTTGCTCA 818277 32 100.0 34 ................................ TCAGGGTCGCATAACTCCACTTTGCAGCGATGTT 818211 32 100.0 34 ................................ AGTGAATATACCGCTCAGCGTGCGTTAGAAAATC 818145 32 100.0 35 ................................ GCCGTTTAGATAACCTTGTCAGGCTTGGCACGATT 818078 32 100.0 34 ................................ ACTATTTTTCACGTTATAGAGATCGTATTAGCAA 818012 32 100.0 35 ................................ TCATCGGGCTTTAAGGTCAAGGCATTATCCACTAA 817945 32 90.6 0 .........................C.A...T | G [817923] ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.6 35 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGATTTGTAATGCTTTTTACCATAGGCA # Right flank : ACTTTTTCCACAAACAAGAGTCTATTTAATGCTTACTCTATATTGCAAAATAATATGTATATCACAACGTCCCCTTTGATTAATCTAGATAGCATGCGATCTTAGGAATAGGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAATGAGTAAGACCGAATTTATCGCCCATGTTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCTGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCAGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCGCTCAATGGATTTATGGTCGTTTAAGAAAATTGGGCGCAGCTAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1425186-1425349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1425186 32 100.0 34 ................................ GCTGCTTTTGGCATAGTCCAACGCCTGCTTAAAA 1425252 32 100.0 34 ................................ GGCAAAGGTTGGGTAAATCGTGTAGCAGGTAATC 1425318 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGCAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTACCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTATAAATCAATCCCCATATTTTAAGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGAGATATAGGGA # Right flank : CTTAATGGTTTTGCATACCGTTACCCCCTCAAGTAGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGTCAAAGTCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACGCTCCCTGCAAACTGGGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAGCTCTGCCCATTTTCACTCACCGTCACGGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCATGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGCTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1531802-1530974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1531801 36 97.2 30 ...............T.................... GCCGATTTTAAATTCCATCTCAAGCTTTTC 1531735 36 100.0 30 .................................... GGGCAGTTGCAAGACATGTATCAAAATCTT 1531669 36 100.0 30 .................................... AACCCAAGACGATTTAGAGTTATACCGAAA 1531603 36 100.0 30 .................................... ATCCGCATTGTTCAAAAGTAACAACACAAG 1531537 36 100.0 30 .................................... CACAATCAAAAGCGATTGTTGATGATTCAA 1531471 36 100.0 30 .................................... CGTACATTCGGTTATACATCAACGCTTAAA 1531405 36 100.0 30 .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 1531339 36 100.0 30 .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 1531273 36 100.0 30 .................................... CGAAGTAAAAATCATTGGTTATGTAGGGCA 1531207 36 100.0 30 .................................... AAGTAAATATTACACAGGAATTATGGGAGA 1531141 36 100.0 30 .................................... ATTTCCTCCACGTTCCCCGATAAATGATTG 1531075 36 100.0 30 .................................... TGCTGTTCTAATTCTACGTCAATCGTTTCT 1531009 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGACGCTATCCTCAACCGTGCGTATTGCTTATATGGTATTACCGCCTGAATTATTAACACGTTTTCATCAACAATTGGGCTTTTACGCCTCTACGGTTTCAAACTTTGAGCAATATGTACTAGCGGAATTTATTCAGCAAGGCTATTTTGAAAAACACATTAACCGAATGCGAGCCTATTATCAGAAAAAACGAGATAATTTGCTCTTTTCACTCAAAAATAGCCCGCTTGCTGAAAAAATTACGATAAAAGAAGAGAATGCAGGGTTGCATTTTATCGTGCAGTTTCACACGGCGTTAAGTGATGAAAAAATTCTGCAATCTGCCAATGAGCAAGGTATAAAGATGGTGAGTTTAGCTCGTTATTATCAAGATAAAAGCCAAGCACCGAAAAATGCATTTGTAGTGGGTTATTCTAACCTAGCAGATAAACAAGTTGATGAGGTGGTGAGATGGTTGAAAAATATATTTAGTCGTAGAGTGCTATAGTTATATGTAGG # Right flank : AGAGTGGTATGAACGCCTTATGTTATAAGGGGGTATTGCGTTTTTAAGCGATTAAAAAACGTGAAAAAATACCAAACAAGCGGTCTGTTTTTGGAAATTTTTTGCAAGATTTTGCAGAGTTTTTTGAAAACAGACCGCTTATTTTTCTCTGTTTTTTGTGGAAAATTGCCGATTTAGTTTATTTGTGTGAACAAAATATCGCCAATTGAACAAAAGTTTTTGTGTAGCGTAAAAAAAATTTTCTTATGGTTGATTTTATTAAAAAAGTAGCAATTGGTTTGCATTGACTTTTTCTTCTTGTGGTTTCAGTTCCCCCACGAGCAACAGCATTGATGTGAACTGTTTTTCGGTGATTTCCAAGCAACGCACGGAGCCTTCCTCCGGCAAATGTGCCGTCAGTCGTTTATTGTGCTTTTCTAATGAATCTCTTCCTCGCACAATGCGGGTGTAAACTGAAAGCTGTAACATTTGATAACCGTCTTTAAGTAAAAATTGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //