Array 1 66224-66678 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWY01000013.1 Lactobacillus delbrueckii subsp. bulgaricus strain Lb1-GS-1 Lb1-GS-1_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66224 28 96.4 33 ..........................T. CGTTGACCGATTGCAGTTCGTGCTTTTGCGTGT 66285 28 100.0 33 ............................ CAAACAGTTCGTCACTTAAAGCGTGCCATTTAG 66346 28 100.0 33 ............................ GCCGGCCGGTTTGTCCAAAAAGGCTCTAAAGGG 66407 28 100.0 33 ............................ TACTTTATTGCCACCGCAAAAGGATACAAAAGA 66468 28 100.0 33 ............................ CGTGCCAAAAATTAAGTTCCTCCTCTACTAGCT 66529 28 100.0 33 ............................ CTGATTGCTGGGGAAGCTGGGAACTGATTGCTG 66590 28 100.0 33 ............................ CGAAGTTCGGCACCTTAAGGACAAGTCCGGAGA 66651 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAAGTGATCAGATTTTATCTATTGGCGCGGTGAAACACGATGGTATAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGTATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAGAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35690-34689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWY01000027.1 Lactobacillus delbrueckii subsp. bulgaricus strain Lb1-GS-1 Lb1-GS-1_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 35689 28 100.0 33 ............................ TGGCAAGCCTCCTAGAATGGCAGGTCCGATTCG 35628 28 100.0 33 ............................ CTGGAAGCTGGAACTGGAAGCTGGAACTGGAAG 35567 28 100.0 33 ............................ AGAGACATAACAAAAAAAGACAGTCAGCGGTTA 35506 28 100.0 33 ............................ CGTGTGTTAAAACGCCGTCGATTTCTTCTTCGG 35445 28 100.0 33 ............................ CCTCCGCGTAGACCGGGATCTTCTCGCCTTCAA 35384 28 100.0 33 ............................ TGCCGTGGCAATGACCAAGATCAATCAGCAAGC G [35360] 35322 28 100.0 33 ............................ CGAGATCCCAGGTGGCTTTGTGATGTTTGTTTC 35261 28 100.0 33 ............................ CCACGGGGACGCCTTCGGGGATTGGACCTCGGA 35200 28 100.0 33 ............................ CCTGCTGGTTAAGGACAACTGGCACAGCCGCTA 35139 28 100.0 33 ............................ TGCGATTAGCAAGATCTGTAAATCATGTTTTCG 35078 28 100.0 33 ............................ TGATTTTCTTGACAGCTTAAGAAAAAAAGCTAA 35017 28 100.0 33 ............................ CATAACCATAGTAGCTCAAAGCCCGATCAAGGG 34956 28 100.0 33 ............................ AGTCCACGTGCGTTTGAAGAACAGCCTGCCTGT 34895 28 100.0 150 ............................ TGTGGGGCGTAGTACACCCCACTGTTATATATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 34717 28 78.6 0 ...........AT.T.C....A.....A | T [34710] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 15 28 98.6 41 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GCAAGTGGGGGTGATCCCGAAGTTCGGCACCTTAAGGACAAGTCCGGAG # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCACCT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //