Array 1 63267-62242 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ANEA01000040.1 Streptococcus agalactiae BSU447 ctg120001137630, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     63266	    36	 100.0	    30	....................................	AAAAATCGAAAAATAGATGTGCGTCCAGCA	
     63200	    36	 100.0	    30	....................................	CCGTTCAATCTGTTCTTGCTTTTGGTCATC	
     63134	    36	 100.0	    30	....................................	AAGGGTGTTAGATGATAATACCTTTTTTAA	
     63068	    36	 100.0	    30	....................................	ACACCGTTGCGGTTGTTGTCGGTCACTCAA	
     63002	    36	 100.0	    30	....................................	TCTATTAACAATAGTTTTATCCAATTGTTT	
     62936	    36	 100.0	    30	....................................	TGAAAACAAGCGCAAAGCTGTCAGAAAACA	
     62870	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT	
     62804	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
     62738	    36	 100.0	    30	....................................	CCGATTATTTCCTACATAATACGCACGTTT	
     62672	    36	 100.0	    30	....................................	AACTGTGTGATACTTTTCGTTTTTTTCTTT	
     62606	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA	
     62540	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC	
     62474	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT 	
     62409	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
     62343	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
     62277	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//