Array 1 1141-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDLP01000124.1 Roseomonas sp. TAS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1140 32 100.0 34 ................................ TGACGGGGGAGCCGCCATGGTCAATGCCTTCGAC 1074 32 100.0 34 ................................ GACTGGGCGGATATCCGCTGGTACGACTGGAAGC 1008 32 100.0 34 ................................ AGCACCCACTGCGTGTTGTTCCGGCTGTCCTCAG 942 32 100.0 33 ................................ ACCGAGGCCATCGAACGCCAGGGCGGCACCGGC 877 32 100.0 34 ................................ GTGGCGGACGCGGCGGACAAGCTGGGCGCCACGG 811 32 100.0 35 ................................ CAGGCGCTCGCGGTGACAGCGGCCCAAGCGTGGGA 744 32 100.0 34 ................................ TCTTTGCCGCAGGCATGCCGGTTCAGGGCTTGCC 678 32 100.0 34 ................................ ATCTGCAAGGGTGGGCGACGGTGGGCGCCCGATC 612 32 100.0 33 ................................ CCGAGCAGACGAGCAGGGCGGCGGTTACGAGAC 547 32 100.0 36 ................................ AAGGAGATCGCCAAGATACCGGCCGAGAAGTTGGAC 479 32 100.0 32 ................................ AGCCCGCTCCAACGCACGACATTGCCGCGGGG 415 32 100.0 34 ................................ TCAGGCGGCGCAGTGCTCTCGATCTCCGCGCCAA 349 32 100.0 34 ................................ CGGTATCAGCAAGGAGTTGCTGGGCACCGCCGAC 283 32 100.0 35 ................................ ATGCGACCGCGCGCCATGTTCTTGACCACGCCAGC 216 32 100.0 34 ................................ GATGCGGAGAAGTGCCGAGACGGCCTCGAAGCGC 150 32 100.0 34 ................................ CCCCTGGAGGGGGAAAACCCCCAGGGCGGTCGTC 84 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : TGGAAGTAGGCCAAAGCCATGCTCATGCTCATCACCTATGATGTCAGCACCGTGACGCCAGCGGGACGTCGCAGGTTGAGACGTGTGGCTCGTGCCTGTCTCGACCATGGCCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAAGTTGACCCGGCACAGTGGACCGCGCTACGCGCGCGTCTGATGGCCGAGGTTGATCTGGAGCAGGACAGCCTGCGTTTCTACCGCCTCGGCGCTTCGGGCAGAGCCCGGGTGGAACATATGGGTGCAAAGCCCGTTCTGGATCTGGAAGGACCATTGGTCTTCTGAGATGACGCAATTTGCGCGATCCGGTAGCGACCATGCCGTGGCGTGGTGGCTCGCGGAGCGCTGAACTCATTGAAAACAGAAGAAGAGTTTGTATAAGCGGAAAGACGCTGCCGGACCGACCTAGGCTTCCACCCTGGTTCGCGACGAGTGGCGGGCAAACCATGGAGCTTTCACAAAAAAAAGTGCCGGGA # Right flank : CTCCACGGCGCTCGACGCGGCCAGGACCGCCGGGCCGTCGCTCCCCGTGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18-3104 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDLP01000450.1 Roseomonas sp. TAS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18 32 100.0 33 ................................ GCATATCTCCCCCGCCGCCTGCTGCTCGCTGAC 83 32 100.0 37 ................................ CGCCATGGCGCGCTTGGCCCACAGCCGCACGGCCATG 152 32 100.0 34 ................................ TCCTGCACCGCGGCGATCGTCGTGTCGCCGAAAT 218 32 100.0 33 ................................ CAGCAACAGGCCCAGCGGCAGCAATTCATTGCC 283 32 100.0 33 ................................ ATCAAGGAGTTCGTCCCGCCGGACAAGCAGATC 348 32 100.0 34 ................................ CAGTAGGCTGGGGAGGTTGCCTTGGCGCAGGGCA 414 32 100.0 34 ................................ GCGCAACCGGACACCAGCGTCCGTGCGAACCTGA 480 32 100.0 34 ................................ TTTGCCTGGAGCCCCAGCAGATGGCTGACAACTT 546 32 100.0 34 ................................ CAGGAGCCGGCGCTGTTGTCGGCGCGGAGCTGAG 612 32 100.0 36 ................................ ACACTACGGACACCCCCACCCACCCCCAACTCAAGG 680 32 100.0 34 ................................ GCATCGTCCCGGCGTGATGGGGCGGACGCAGCGC 746 32 100.0 34 ................................ GCGTTTCCATTGTGCTGGATGAGAAGAACGAGAA 812 32 100.0 34 ................................ TCCATCGCAAGCCTGGAGGAGACCGGCATGAACC 878 32 100.0 37 ................................ TTCCTCGCGCCAGGAGCTCCACTGGTCGTCCGAGCGG 947 32 100.0 34 ................................ ATCGGGTTGATCGCGATCGTCCTCGCTCTCGCGG 1013 32 100.0 35 ................................ AGGGCGGGGAGGGATAGCGGCCCGCGCGTTAGCGC 1080 32 100.0 34 ................................ GCCTATGCGGACAGCAGCCTGCTCTATGATGGCC 1146 32 100.0 36 ................................ TGCCGCTGTAGCTCGATATCCGCCTGCGCCTTGACC 1214 32 100.0 33 ................................ GGGCCGTGCTGCTCAACCGCGATATGCCCGGCG 1279 32 100.0 31 ................................ ACGTGGCCGGCAGGGAGGCCAGGGAAAGTGT 1342 32 100.0 35 ................................ TGCCAGCCGTCAGCGCAGCCATTGGCCACCCGCGT 1409 32 100.0 36 ................................ CCGCTGGTGAGCTATTTCGACCAAAGGGATTACTCG 1477 32 100.0 34 ................................ TTTTCCCTTCTCAGGGAGGGGCGTGATGGGGCTA 1543 32 100.0 34 ................................ CCCATGGATCGCGTGGGGGTAGGCAACAATCCAG 1609 32 100.0 36 ................................ TCTGACGGTAAGTATGCCGTGGGCGAACAGATCGTG 1677 32 100.0 34 ................................ ACCTCGCGGAGGTGGGTCGCGTCGGGGGTGCGGG 1743 32 100.0 35 ................................ GCCGGGTGGGATGCGCAGCGCAGTCAGAAGGACCG 1810 32 100.0 34 ................................ AGTCCCTCGAAGAAGGCGGCGTTCGTACAGCCAA 1876 32 100.0 34 ................................ CCACCCTTGGTCAGGGCAACGATCCAGTCCACGG 1942 32 100.0 35 ................................ CGCGAGGGCGCGACGGATGAGGGGCGACTTGTCGC 2009 32 100.0 35 ................................ CTGCTGCGGCTCCTGCTGGCCCTCTGGCGCCGCTG 2076 32 100.0 37 ................................ GAGGATCTGGGCAACTGGATCGCTGGCATCGCCAAGC 2145 32 100.0 33 ................................ ACCGAGGCGATCGAACGCCAGGGCGGCACCGGC 2210 32 100.0 35 ................................ AACTGCCCGGTCATCCTCCTGGCACAGCTGAGCCG 2277 32 100.0 33 ................................ CAGAGCGGGGAGGTAACGCTGGACAACCGGGAT 2342 32 100.0 34 ................................ CTGGCGCTGCTGCCATCCGGCCTGAAGGGCGCCA 2408 32 100.0 34 ................................ CCGGTCATCGCGGCGCCTCCGCGCAGCGCGCCTC 2474 32 100.0 34 ................................ CTGGCGCTGCTGCCATCCGGCCTGAAGGGCGCCA 2540 32 100.0 33 ................................ TCCTCCTGGACCGCGTGGGCGCGGCCCGGCCCA 2605 32 100.0 35 ................................ CGCGGCGCAGTTCCAGGATCGCGTCCTCCTACGCG 2672 32 100.0 35 ................................ CACCAGGGCGCCGGCACGGCGGTGGGCGATCAGGC 2739 32 100.0 35 ................................ AGCATGACGGCGGCCTCTTCCACGATGTCAGCCGG 2806 32 100.0 35 ................................ ACAGCGAGACAGAACAATGAACCCGAAGCGCGCAG 2873 32 100.0 35 ................................ TCCGGTGGCTTCCTCGCGCTGACCGGCCCCGGCAA 2940 32 100.0 35 ................................ CTCCACAAGCCGGAGAAGAAGGACCTTGAGCTGGA 3007 32 100.0 34 ................................ CTGATCCGGGCTCCGGTGGCGGACGTGACGGCGG 3073 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 47 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : GCCAGGACCGCCGGGCCG # Right flank : TGGCGAAGGGCCGGAAAGGGAGTGATGGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 908-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDLP01000717.1 Roseomonas sp. TAS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 907 32 93.8 34 CA.............................. TGGCGAAGGGCCGGAAAGGGAGTGATGGTCTGAA 841 32 100.0 35 ................................ TATGACAAGCTGCGCCGGCACCCCAAGGTGCTGGA 774 32 100.0 33 ................................ TGGCCGCCCTCCAGGGTGCCGGCCTGATCAGTC 709 32 100.0 33 ................................ GCGACGGCGGAATGCGCCTGGTTCTGGACCATG 644 32 100.0 34 ................................ CGGTAGGGCCGGACATTGCGCCGGTCCTGGCTCG 578 32 100.0 34 ................................ CCGGCGCCGCTCGGACGACCAGTGGAGCTCCTGG 512 32 100.0 33 ................................ CCTTTTCCGGCTCCCTGCCACGCCCAGCACTGC 447 32 100.0 35 ................................ TACGGGATCGTGCGGGCGCTGAAAGACCCGCAGCG 380 32 100.0 37 ................................ CAGAAGCTCGCGCAGGACATGGCACGGGTGGAGTCCG 311 32 100.0 33 ................................ GCTCTGAACGGCTCTGGCGTGTCCTCCATGTTC 246 31 84.4 0 .............T..-.T.......A.G... | A,ACG [219,224] ========== ====== ====== ====== ================================ ===================================== ================== 11 32 98.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CGCCTTACGGTGGAGCTGTGCGTAGATGTGATCAAGAGACAG # Right flank : CCCTGTTGGAGGGGTGATCGGCGTCCAAACGGGACCCCACTGACGGCGGGGTTCACAGTGGTTTCCGGGATGATCGGGAGCCAGTGCTGGGATGCTGGTCGTGGAGACAGTGGCAAAGATCCGGCGCCTGCACCGGGTGCAGGGCAAGTCGATCAAGGCGATCTGTCGTGAGCTCGGGATTTCGCGAAAGGTGGTCCGGAAGGTTCTGCGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //