Array 1 114908-114674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025931.1 Porphyromonas gingivalis strain TDC 60 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114907 36 100.0 30 .................................... AAAATAATCACACTTATATAATATGGCAGT 114841 36 100.0 30 .................................... CTGAGCAGCCTATCGAACATTGGCCACTTC 114775 36 100.0 30 .................................... TTTGCGGAAGAGTGCATCTACAGCCACATC 114709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : CGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACTTTTCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACAATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2132965-2133307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025931.1 Porphyromonas gingivalis strain TDC 60 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2132965 37 100.0 43 ..................................... CCAAAACTGCTAAGGCTGCAGCTCAGAATGCACTAGACCAGTT 2133045 37 100.0 39 ..................................... TATAGTTCAAGCTTCTGATACAGACTTGATTGAAGAAGA 2133121 37 100.0 41 ..................................... CGGGAGTGCGACAAGATACTTGGCTCCGGCCGCACGATTGG 2133199 37 100.0 35 ..................................... CGTATATCCGGCATTAGTAGGAGAGGTTATGATAA 2133271 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 100.0 40 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : TACGAGCCTGTCCCCCGAAAACGACCGAACTTTCCTTTACGGACAAATCCGCCTCTTGGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATACGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATCAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTATAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATATGTGATTCGATTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 2166942-2171252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025931.1 Porphyromonas gingivalis strain TDC 60 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2166942 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 2167008 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 2167074 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 2167140 30 100.0 36 .............................. TGTCATATAGATATGACATCTTAGATATTGGTACTA 2167206 30 100.0 35 .............................. TGTCGTAACAGCAGGGATGAACTATGCGCTGCACG 2167271 30 100.0 34 .............................. CGTTATACCTTCTATCGTCTTCAAATCTAAGGAT 2167335 30 100.0 36 .............................. GGGTGGCGAGCAATGACGCGCTCCAGAACCCGACCG 2167401 30 100.0 37 .............................. CCTTTGCCGTACGGGCGCGGCCGTAATGCGATCAAAG 2167468 30 100.0 36 .............................. AATACGTAGGAGGCGGACTATGATAGTAGCGATTAT 2167534 30 100.0 36 .............................. CGTCAGCGCTTCAAGTACTCCACCCGCTCCTACGAG 2167600 30 100.0 37 .............................. TTGTAGAATCTTATGTTTTTAGAGAACTATTTAATCA 2167667 30 100.0 38 .............................. ATGAAATAACCCCAAAGATAAATCCAACTACAGGCAAA 2167735 30 100.0 34 .............................. TAAATAATCATTTAATTGTAACATTTTGTGAATA 2167799 30 100.0 35 .............................. ATAGTATCACACAACATCAAATGTTAGATGGATAT 2167864 30 100.0 38 .............................. TTAGTAGGAGATGAAGACGACTTTTTTAACGTGGTCAA 2167932 30 100.0 35 .............................. CTTTGTAGATTTATCGGATTATTTCGATATTATAA 2167997 30 100.0 37 .............................. TTAATGCAAAAACTATAGTCCTCAACGCTAAAGACGC 2168064 30 100.0 36 .............................. AGTATGCCTGACACGCGAGATCGCACCTTGTCGAGG 2168130 30 100.0 38 .............................. ACGGGCGTTGTTCAGTCGGTCGTTATCGGAGTAATCGA 2168198 30 100.0 35 .............................. ACTATTCGGGAGGGAAGATATACAACGAGACCGAT 2168263 30 100.0 38 .............................. ACGGGGATGGCTCAGCCCTCGATTAGCCGGTTTCTGGC 2168331 30 100.0 36 .............................. CTTGCCTTTAGAGCTCTTTTTTTATCAAGCTCATTG 2168397 30 100.0 36 .............................. GCATTCGCGATTTTTCCGACCTCGAACGAATCGTAT 2168463 30 100.0 35 .............................. GACGCAGGCGCGGGCGGACGTGTATAAAAAGTACT 2168528 30 100.0 35 .............................. TTCGGTGGCATCGTCTTCGTTCGCATACAGAACGT 2168593 30 100.0 37 .............................. ATTTCTTACGCCCCATTCAAACTCATCCAGAAATTCT 2168660 30 100.0 35 .............................. TGTTTCAGGATTTACCGTTGTGTACGTTCTGAGCT 2168725 30 100.0 35 .............................. GTGAACGGAGCGTCGAAACAATGCCACGTTCCGAA 2168790 30 100.0 37 .............................. CCGAGCGATAAGACCACATAAGGAGAAACGATCCGCT 2168857 30 100.0 36 .............................. ACCTGCAATAGATATACGACATAATTTCGTATTGCA 2168923 30 100.0 36 .............................. CCTCTAAAATCATGTACGATTTTAGGGGGTTGTTTA 2168989 30 100.0 35 .............................. AGTAATTATTCAAATTTCTTGTTTATCGGATCTCT 2169054 30 100.0 35 .............................. GAGGCCTCATTCGGCTCTATCTTCGCACCCGACAC 2169119 30 100.0 36 .............................. TGTTGGCTTCCAACTTGTCGGCTTTGATCTCAACAT 2169185 30 100.0 35 .............................. CCGACCTGCTTCCACCCTCTTCCGCCTTTATTCAA 2169250 30 100.0 36 .............................. TCTTTTTTTGAAGAAAATTCATAGAAACAATGTAAG 2169316 30 100.0 36 .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 2169382 30 100.0 36 .............................. GCTTTTTCACCTTTCGCGCCAATCGCTCAAAGCTCA 2169448 30 100.0 35 .............................. GTGATACGATTAATACGTTAGCGTTATTCTTCATG 2169513 30 100.0 35 .............................. TTCTTTATCGTGATATTTTGTCCGCTCTTTTTGAC 2169578 30 100.0 36 .............................. AGGTTGCGCATTTCTTCTCCATGCAAGATGTAAACA 2169644 30 100.0 37 .............................. TTCATGTCTATTCCTCTTCTTTATAGGTTCCTAATTT 2169711 30 100.0 34 .............................. TAAATGCGTTCTCAATCACACCAATCTTGCCGGC 2169775 30 100.0 35 .............................. CGTTCAGTTGTTCGCATTCAGTCGCCGACTGCCCC 2169840 30 100.0 35 .............................. ATCCACATTAGACGCATTCGCACTCGTCCAGCCCG 2169905 30 100.0 35 .............................. CTGATGACATACAAAGAGTATATCGCGGCAATGGT 2169970 30 100.0 36 .............................. TATCCTCGTACAGGTTTGCCACCTTGTCGGAGACGT 2170036 30 100.0 38 .............................. ATGCTTATTCAAAGGTGGATCGCGTGGTGATTTCTCAG 2170104 30 100.0 36 .............................. CCTTCTACGATTACTGCCATTTACTTTACTTTTTTT 2170170 30 100.0 35 .............................. TAATAGTCCACACCCCAACGCCAAAGGATGAATCG 2170235 30 100.0 36 .............................. CGGTAATCCTCCAGCGACGCCAGCCCGTCCGTGGCG 2170301 30 100.0 36 .............................. AACGTCGATGTCTCAGGCGACTATGGCACAGCCACA 2170367 30 100.0 36 .............................. CGACATGCCACCCGCAGGACACGATATGCCGCGAGA 2170433 30 100.0 36 .............................. GCGGCCCTTGTCGGCCGCTCTCTCTTTCGTTATCGA 2170499 30 100.0 36 .............................. GCGTACCCGCCTCTGCAGTTGCAAACACAGCTGCGA 2170565 30 100.0 35 .............................. CCAGCCTTGTTTTTCGAACCCGAGGTGGCAAGGAC 2170630 30 100.0 37 .............................. GTACAGGCGATTACGGGCGTGGTGGGTAAAGAGTTCG 2170697 30 100.0 36 .............................. CCGCGTCGGACAAGTCCGCGGGCTGGAGACCCAGTA 2170763 30 100.0 36 .............................. TTTCTCTGACATTAAAATAGAAATCATCGCTGAAGA 2170829 30 100.0 35 .............................. CCTCCGCCCCCAGCCCGCTATCGACCCCCACCTGC 2170894 30 100.0 36 .............................. AGGGCTGACGTGTATAAAAAATACCTGGGGGATAAT 2170960 30 100.0 36 .............................. CTCAACCAGTTCGGGCTGGAGGCGTCGGAGGCGGCT 2171026 30 100.0 35 .............................. ACTTCGCCGTCCGCGGTAATGTGACCAATACCGAC 2171091 30 100.0 35 .............................. CACCCACCCACGCCAGCACCCTCTGCCACCAGCGC 2171156 30 100.0 37 .............................. AACTCAAAAAAACTACAATAAATATGCCAACAGTAGT 2171223 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 66 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CAGTGCCGAACGAAATCGACTGATGGTGCTGTGGTCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGTTAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACTAATTGCCATGCAAAGGTCTCTGTCATATAGATATGACATCTTAGATATTGGTACTA # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //