Array 1 63271-61779 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXM02000029.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0060 NODE_29_length_68861_cov_22.004074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63270 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 63209 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 63148 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 63087 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 63026 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 62965 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 62904 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 62843 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 62782 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 62721 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 62660 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 62599 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 62538 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 62477 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 62416 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 62355 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 62294 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 62233 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 62172 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 62111 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 62050 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 61989 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 61928 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 61867 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 61806 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //