Array 1 66295-67584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVA010000013.1 Listeria seeligeri strain FSL L7-0836 NODE_13_length_72879_cov_185.553350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66295 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 66361 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 66427 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 66493 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 66559 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 66625 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 66691 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 66757 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 66823 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 66889 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 66955 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 67021 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 67087 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 67153 36 100.0 30 .................................... CACAAAATGCTATCAACTAGAAGGTTATGT 67219 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 67285 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 67351 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 67417 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 67483 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 67549 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 62600-61405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVA010000003.1 Listeria seeligeri strain FSL L7-0836 NODE_3_length_291068_cov_165.531707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 62599 29 100.0 35 ............................. TTAGAAAAGGTATACGTGCTTGGCGCTGGCCAAGC 62535 29 100.0 36 ............................. ATATTCAAGGGCTTTTGGAGTAGTTACTTTGGTGAT 62470 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 62405 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 62339 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 62276 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 62212 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 62147 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 62084 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 62018 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 61952 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 61888 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 61823 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 61758 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 61692 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 61628 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 61563 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 61498 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 61433 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 97.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTTGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGGAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 72465-71204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVA010000003.1 Listeria seeligeri strain FSL L7-0836 NODE_3_length_291068_cov_165.531707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72464 29 100.0 37 ............................. GAATACGCATTCGTTAAACACTTTTCAAATTCTCTTT 72398 29 100.0 37 ............................. TATGGACTCAGATAGATACTTTGTAAACACGATAGTT 72332 29 100.0 35 ............................. AAATATCCACAAAACGAATGTAGTTATGAATAATC 72268 29 100.0 36 ............................. TTAGAAAATTATCGAGCAAATGTTTCTGATGACAGT 72203 29 100.0 38 ............................. CCAGCAAGGCCATATTAATGGAAATTCAAACAATTGCA 72136 29 100.0 35 ............................. TCGTTATTGATTAGAACATAAAACTGTTCTCCAGC 72072 29 100.0 34 ............................. CCTTCTAATTGGAATTTGAACATACCATCGTTAG 72009 29 96.6 36 ......................A...... TCATAAATTTGGGGGCGGTTACGACAACTGTCGGAG 71944 29 100.0 38 ............................. CTTACTACAGCAGGCGAATACGACGAGGATAATTTAAA 71877 29 100.0 34 ............................. GAAGGTCTTTTTGACTTATTTAGTAATATGTTTC 71814 29 100.0 36 ............................. ATTTAGAAATCAGTGTGCATTTAAACGCAGGCGGGG 71749 29 100.0 36 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAAGCAAAATA 71684 29 100.0 36 ............................. TTTGTATATTGCGTAACGGGGTACATAACTTCTTTG 71619 29 100.0 36 ............................. CGCATTTTTATGTCTAGTGAAAGTTCCTTAATCAAC 71554 29 100.0 35 ............................. TCAATCAAAACAATTGATTCATGGAATGGTTATGT 71490 29 96.6 35 ............C................ GAGGCATCTGCTAGTAAAGTGAAAAAAGAATTTAA 71426 29 96.6 34 ............C................ ACTTGACCGTTATAGCTTGCAAATAGGGCTTTTC 71363 29 96.6 37 .......G..................... TGGCATAATGCCCATTGACCTTGTAAGGTTGGTCAAG 71297 29 100.0 35 ............................. ATGTATTTCGAACAACTTTTATTAGGGTATAAAAC 71233 29 89.7 0 .............C..A...........G | T [71206] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATTAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATACAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 79572-78700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVA010000003.1 Listeria seeligeri strain FSL L7-0836 NODE_3_length_291068_cov_165.531707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 79571 29 100.0 34 ............................. AAAGACGTTCGTTTAATACTAGCCGTTCACCAAG 79508 29 100.0 36 ............................. ACAGGTCAAGAGTATATGATGCCAGAGTTAGGTTTA 79443 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 79379 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 79314 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 79249 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 79183 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 79118 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 79054 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 78987 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 78923 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 78859 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 78794 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 78728 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //