Array 1 106-2898 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOL01000335.1 Xanthomonas oryzae pv. oryzae strain XZ43 scaffold334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 106 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 172 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 239 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 306 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 370 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 435 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 501 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 566 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 633 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 699 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 766 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 832 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 896 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 961 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 1026 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 1091 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 1157 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 1222 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 1289 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 1354 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 1421 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1487 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1554 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1620 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1687 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1755 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1820 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1885 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1950 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 2015 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 2081 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 2147 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 2212 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 2277 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 2343 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 2409 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 2473 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 2540 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 2605 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 2671 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 2736 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 2803 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 2868 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 43 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GACTCAGCATTTTTCCAGTCATTGAAATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCTTAGCGGTAATATCAGTCATTTTATTGGTGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1735-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOL01000099.1 Xanthomonas oryzae pv. oryzae strain XZ43 scaffold98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1734 31 100.0 34 ............................... AGGCGCAGGGGGATGTTGGTACGGCGCCAAGTTG 1669 31 100.0 34 ............................... TGCACCCGTACCGAAAGTTTGCAGGGGTGCGGTG 1604 31 100.0 35 ............................... CTGCGGCCCGGGTACGACTCAGTTGCAATGCATAT 1538 31 100.0 37 ............................... GCGCCCGTGGTCAAGCTTACGGAGACCATCATCTCCG 1470 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 1405 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 1339 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 1273 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 1207 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 1141 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 1074 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 1008 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 942 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 877 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 812 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 746 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 681 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 616 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 552 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 487 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 422 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 358 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 292 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CCAGCTTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTTCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //