Array 1 117475-117923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALBT010000008.1 Providencia sp. M-27 NODE_8_length_213462_cov_74.0612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117475 28 100.0 32 ............................ ACCAATACTACCCCCTAAATTTTGTTTATGCC 117535 28 100.0 33 ............................ TCATTATCCTTATGTTTGATGTTAGTTTGTAGT 117596 28 100.0 32 ............................ ATCTGCTGCGCACCGAACTTTTGAAATGTTAG 117656 28 100.0 32 ............................ ATCATCATGTCGTTATGTTTACCGCCGAACAT 117716 28 100.0 32 ............................ GCTTAATTGCGGTTTTTTTACGTTCAAAATTC 117776 28 100.0 32 ............................ TTACAAGTTTACAGCCAGTTTTAATCCGCTCT 117836 28 96.4 32 ...........T................ AATTTGAATTTGAATCGCTTGCTCTGCTGAAA 117896 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAATATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCAATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTTAAAGACTTAAATAGCATGTCACTTTTCGGTAGCCGTTAATTATTTAATATTATTTTTACTCACCGCGCTGTGGAGTGATCCAAGCGCGGTTTTTTTGTTTGGTTTTTTTAGTCACTACTTCAAAGTTTGAGTTCACTATTTGTGTTTTTCATATTGCATAAATTTGCGTTTGTTTTACCCTAATTTGACCTTTGATTTTTGCTCTTTAAAAATTCATTCACTAAACAATAAGTTGCAACCAGTACTGAAAATAAAGCTATTTTTCATTTTTTAAAGTTAGCACGTTGTTTTTATTTGTTTTAATCTACAAAAGTTATA # Right flank : AGTCAGATGTAGATACCATCTCTAGAAGCGAACTCAAAATTAATGAAGGTTAATTTTGGCTGATATCTTATTTGATTTTTTATACCCCCCAAACAGATTTGAATCAGCTTTTGCGTTGTAGTCCATAATGCTGCTCGAGTCTCAGATTTAAAAAATTCTATTGGTATTGCTAATTGTTCATTGTATTGACTGTATTTTGGCATAAAAAGCGCGGTAGTAATTGGTTGTCCAACTATTGGGGGGCACTTCGCTTTTAAATTTTCCTTAGGGTTTTCTTTTTGTAACAAAGCTAAACTAGATATCTAATTTCACTTGAACATCAATATGTATTTTGAAATAGATGATAAGCCACCATAACGGTAGCTTTTTGCTGTTAGATGACTTTACTATTTGATAGTATGAATTCCCTAATGTTTCACAATGGTTAAGTAGTAGCCTATGATTTTTTAAGTACTGATAGAAAAGTGAAAGAGTTAGGCATGCAACTTGAAAGTCGTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 129495-130003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALBT010000008.1 Providencia sp. M-27 NODE_8_length_213462_cov_74.0612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 129495 28 100.0 32 ............................ GATTTAATGATAATGAAGCGTTAATTAATCAA 129555 28 100.0 32 ............................ ACAGACCATAACGCCGAGCTTGTCCACGGCTT 129615 28 100.0 32 ............................ ACATGCGGTTCAGGATGCTTAGTGGACGGGTA 129675 28 100.0 32 ............................ AGCTATGGGGAACACTGGAAGATTTAGAAGCA 129735 28 100.0 33 ............................ ATAACAGGATTTCGCCAACCGTCATGGCGTCAT 129796 28 100.0 32 ............................ TATGCGCATCGTCAATGAAGATGATTCCGATG 129856 28 100.0 32 ............................ AATCGAAGCCGTAGTTACTCAATACTATATTC 129916 28 92.9 32 ...........T...............G ATCGTCGTGAGGATGACGTACTTCGCCCCAGT 129976 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAAACCGTACCTGAACAGCATGTCCAAGTAAGCTATATTCGAAAGCATGTAAAAGGTCAGAGTCGAATTGAAGCCGATATGCAGCAAAAAGCGCGATTATGGTCTGAAAAATCAGGACAACCATTAGAACAGTGCTTAAAGACGTTGTCTGCGAGTAAGCCAAAGGCGGCTAATCGCTTGCCATTTATTTGGGTTGAAAGCTTACATGCCAGAGATAAGCAAGCTGAAAGCCGGTCTTTTCCTTTGTTTATTAAAAGGATAGACGCTACACAAAAGCAAGTTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAATGACTCAGTTTGTTTAGCAACGGTTCCACATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTGGTTAATAAATCAGTAAGTTATAATTATCAATAAATAAAAGGGTATTTTTCGATAAATACCCTTAACTGATTGTTATTACTTGTTTTTTGTTTTAAAGTGCATT # Right flank : ATTGTGTTGCGATAAAGACAGGAAACTATATTGGAGCTACTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGTTGCTTATGAAGAAGAAATTAGAACTGAAAAATTGCAGGCAATGCTTAAGGCGTGGCGAGAGTCAGCTGGGTTAACAAAAGTTTAAATCGCTGAAATTATAGGGGTTAATCCATCAACTATCACAAGGTTGGAGAGTAATGTGAATAATGCGAGTATTAAAAGCATTGTAAAGTATGCAGCTGCATGTGGTATTAAAAACCCTGTAATCGCCCTTTAAGATAAACTTTATTTACTTTTAATTAGTCATCCCATATTAACTTTTAATCTTTACGTTAAAAACAATTCATCTTAGATTTCTCTCCGTACCGTATTAATTAAGTAGATAGATAACTGTCAATTGACAGCTTAGAAACGAAACAAGTAATGGGTATGATTACCGCCACGCAGGCGGCTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //