Array 1 37602-38364 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVT01000014.1 Streptococcus agalactiae strain ES-PW-160 ctg7180000003100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 37602 32 100.0 35 ................................ ATCTTTGTTTCAAAATCAACGTTATCCATGATAAA 37669 32 100.0 36 ................................ TTATCTGTTAAATAGATTGTCATACCCTTTTTAGCA 37737 32 100.0 33 ................................ TTCTAGGTCAATCAATTCTTGTGGTTTATCATG 37802 32 100.0 34 ................................ ACTCATTAAGCGTAATTCCGTGTTGTCAGGTGTA 37868 32 100.0 37 ................................ TTTAGTACCATATGGTTGCATGGCATTTACCAATACT 37937 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 38004 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 38070 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 38136 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 38203 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 38269 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 38334 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.2 35 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45746-44522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVT01000035.1 Streptococcus agalactiae strain ES-PW-160 ctg7180000003121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45745 36 100.0 30 .................................... GAAGTCGAAAAAGATGACTTCTATTACTGG 45679 36 100.0 30 .................................... AATGAAGATATTCTAGCTCGTGTAAAAATA 45613 36 100.0 30 .................................... TGAAAAAATCAAAGAATTGTGCAAACAGCG 45547 36 100.0 30 .................................... ATCTAACTTAACTTATGAGTCAGTATTTTT 45481 36 100.0 30 .................................... TTGACCTGTTTCATTCTCTGGAACTTGTTG 45415 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 45349 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 45283 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 45217 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 45151 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 45085 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 45019 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44953 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 44887 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44821 36 100.0 31 .................................... CACAAGAAACAAACAGCCTTGATGACTTAAT 44754 36 100.0 29 .................................... AACCCTATGTTTGATAATATTTTAGACGT 44689 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44623 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 44557 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGG # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //