Array 1 73698-72290 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJX01000002.1 Moraxella catarrhalis strain 3/7/2001 NODE_2_length_288320_cov_18.157578, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73697 28 100.0 32 ............................ AATCAGGTAGAGCGGTTGTCCATGTTGGTGTT 73637 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 73577 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 73517 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 73457 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 73397 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 73337 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 73277 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 73217 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 73157 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 73097 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 73037 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 72977 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 72917 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 72857 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 72797 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 72737 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 72677 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 72617 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 72557 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 72497 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 72437 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 72377 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 72317 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //