Array 1 74579-72485 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXQ01000023.1 Neisseria meningitidis NM183 NM183.contig.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 74578 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 74512 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 74446 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 74380 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 74314 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 74248 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 74182 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 74104 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 74038 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 73972 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 73906 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 73840 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 73774 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 73708 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 73642 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73576 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73510 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 73444 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 73378 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 73312 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 73246 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 73180 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 73114 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 73048 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 72982 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 72916 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 72850 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 72784 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 72718 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 72652 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 72586 36 100.0 30 .................................... CCAAATCGGCAACGGTAATGGTTTCGGGAA 72520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //