Array 1 16284-18066 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLH01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N50422 N50422_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 16284 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 16346 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 16408 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 16469 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 16530 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 16591 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 16652 29 96.6 32 ...........A................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 16713 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 16774 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 16835 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 16896 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 16957 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 17018 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 17080 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 17182 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 17243 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 17305 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 17366 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 17427 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 17488 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 17549 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 17610 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 17671 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 17732 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 17793 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 17854 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 17915 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 17976 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 18037 29 96.6 0 ............T................ | A [18064] ========== ====== ====== ====== ============================= ========================================================================= ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1306-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLH01000007.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N50422 N50422_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1305 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 1244 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 1183 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1122 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1061 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 1000 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 939 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 878 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 817 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 756 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 695 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 634 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 573 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 512 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 451 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 390 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 329 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 268 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 207 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 146 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 85 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //