Array 1 8330-7694 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOE01000087.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CVM N51293 N51293_contig_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8329 27 93.1 32 --........................... TCCACTGTACCGCCGACAGGACTTTTTAACGT 8270 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 8209 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 8148 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 8087 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 8026 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 7965 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 7904 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 7843 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 7782 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 7721 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-204 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOE01000138.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CVM N51293 N51293_contig_138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 89.7 32 --..........................G CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 60 29 93.1 33 ...................A........G GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 122 29 100.0 32 ............................. GCAGATTGGTATCTGGTACGACGACTGCCGCC 183 22 75.9 0 ......................------- | Deletion [205] ========== ====== ====== ====== ============================= ================================= ================== 4 29 89.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCA # Left flank : | # Right flank : TAAAC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOE01000139.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CVM N51293 N51293_contig_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CGGGTGATTTTAATGATGTGCTGACTACCGGC 60 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 121 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 182 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 243 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 304 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 365 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 426 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 487 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : ATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //