Array 1 344555-341474 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 344554 29 100.0 32 ............................. CCCATCAAGGTCTACCGCCTCGCCGAGGTGGC 344493 29 100.0 32 ............................. CCCACCCCAACACCCCTAGCCAGCCATCCGGT 344432 29 100.0 32 ............................. CGCCGAGGCCGAGGCCGGCCGGGGCGCCGCAC 344371 29 100.0 32 ............................. CCACCCCGAGGGCTTGACCAGCCCCCGCGCGG 344310 29 100.0 32 ............................. CACTGAGCACTATTCGACTGGTGCAGACCTCG 344249 29 100.0 32 ............................. GTGCAGCAGCGGACGACGCTCGGTGCGGCGGC 344188 29 100.0 33 ............................. TGTCGGACGCCATGCAGCGGAACCACGCCCGCG 344126 29 100.0 32 ............................. TATGCGCGGATCAGGAAGAGCAACGGCAACGA 344065 29 100.0 32 ............................. CCGCCGTCCCCGATGGAAACCGTCAATGACAT 344004 29 100.0 32 ............................. CGACGCGCGTACCAGAGGCATAGCCCGGTTCC 343943 29 100.0 32 ............................. GCTCGCGCGGGCCGGACGGACGGACGGACGGG 343882 29 100.0 32 ............................. CTGTACGGTAGCCGTGCAGGTTGAGGGAGAGG 343821 29 100.0 32 ............................. CCGCTCTCCCTGATGCGGGAACTGGTACGCAT 343760 29 100.0 32 ............................. TTGACGCCCTCGGCGTAGCGGCCGTGCGCGGC 343699 29 96.6 33 ............................A GAGGACTTCCTTGGCCGCGTCGCGGTCGGTCAT 343637 29 100.0 32 ............................. AGGCGGCCGATGGCCTGCCAGGTGGTGCCCTC 343576 29 100.0 32 ............................. CCCCGGGCCGTCCGCCCCGAGATCGGTCTACT 343515 29 100.0 32 ............................. CCGCCGCCGAGCGCCGGGCCGCCGAAGCCGCG 343454 29 96.6 32 ............................A GACGCGGCGATCGTCCAGATCCGCCCGACCGT 343393 29 100.0 32 ............................. GGCGAGCGGGCGGCGACGTCGGTGGGTCGGTG 343332 29 100.0 32 ............................. ACGACCACGACCACGGCGTCGGTCACCGAGTC 343271 29 100.0 32 ............................. CTCGACGCGCAGCTCGCGGTCCTCCTGGCGAC 343210 29 100.0 32 ............................. AGGCTCTTGCCGCCCGCTGTGGCGGCGCCCAC 343149 29 96.6 32 ............................A ACTGCTGGACCGCCCTCTACCCCGACGGCCAC 343088 29 100.0 32 ............................. TCCCCCGTGATGAGATGCCACGGAGGACACTG 343027 29 100.0 32 ............................. CCGTCGCAGTCCCCGCAGGACCCGGCGGCGGT 342966 29 100.0 32 ............................. GAGCTGTTCCGCGCGGCCAAGCAATGGTCGCC 342905 29 100.0 32 ............................. ACGTTTCTCCCGGCACACCGTCGGCGTCCGCG 342844 29 100.0 32 ............................. AACGCGAGCATGGGACGGCTCGGTCTCAGCGG 342783 29 100.0 32 ............................. CGATGCCGCGCCTCGGCATACAGCACGCCCGG 342722 29 100.0 32 ............................. ATGGCGTCCAGGTCGTCGGCCGCTGACGCGCT 342661 29 100.0 32 ............................. GCGACGGGCTTGTCGTCGGTGTCGGGTGGCCC 342600 29 100.0 32 ............................. CAGCGCGCGATTAACGTCAACATCACCAAGAA 342539 29 100.0 32 ............................. CCGGGCGAGCTCGACGAGATCGAGCTCTTCTA 342478 29 100.0 32 ............................. TGAGGTCTCCAATGGACTGGGAACCTGCGGCG 342417 29 100.0 32 ............................. GACGGCGACCGCATTCCGTCTGTCCGCCAGAT 342356 29 100.0 32 ............................. GGCGTGCTCCTGGTCCCCGTCGCCCTGGTCCT 342295 29 100.0 32 ............................. CGCCGGACGGACCGGGTTTCGTCATGACGAAA 342234 29 100.0 32 ............................. TGCCGGGTGAGCGGCTGGCGGTGCGGTGCGGG 342173 29 96.6 32 ............................T ACTGCTCGCCCAGCGCCCCGCCGAGGAGCGCC 342112 29 100.0 32 ............................. CCGGAGCAGATGGCCGACGGGGTGGGATCGAT 342051 29 96.6 32 .....T....................... CCGGTGGTGACGGTCATGACGGTGTCCTTCCG 341990 29 100.0 32 ............................. CGCTCCTGGATCTGCTCGTGGCCGTTCTCGGC 341929 29 100.0 32 ............................. GCGGCCACGTTCGTGTCGAGCGGGTTGCTCGT 341868 29 100.0 32 ............................. TTCCTGCACGCCCGGGGCGGGACCGCGACGAC 341807 29 100.0 32 ............................. GCGCGGTGGGGCGTGCGACGCGTCGCACTGGT 341746 29 100.0 32 ............................. TCGATGAGCCTCCAGTGCTACGACTTCGCGAA 341685 29 100.0 32 ............................. GTACGCGGATATGACGCGGACTACTCGGGCCA 341624 29 100.0 32 ............................. GTACGCGCCGGCACCTACCAGGACCCCAAGCG 341563 29 100.0 32 ............................. AGGCGGCACGCCCAGCTCATGAGCGTTGCCAA 341502 29 96.6 0 .............G............... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.6 32 GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Left flank : GGCTCCTGCCGCGCATCGTCGCCGACATCCAGAACCTTCTCGAGCCCGGAACAGGCCCCACAGACGACGACATCGAGGAAGCCACCGAAGAACTCACCCACCTATGGGACCCCGAACTCGGCAACATCCGCGGCGGGATCAACTACGGCGACAAGGACTGAACCATGGCCTCCATGACCGTCATCTCCACCACGGCCGTGCCCGACCATGTCAGGGGCGCACTGTCCCGCTGGATGCTGGAAACCATGCCCGGTCTCTACGTCGGGACCCTTTCCGCCAGGGTGCGCGACGAACTGTGGAAGGCCGTATCCGCCACTATCGCTGACGGCGCAGCGGTCCTGCTCCACCCCCAGGCGAACGAGCAGGGCTTCACCTTGGCCACCGCAGGCACCCGCCGCCGCACACCCATCGACTTCGATGGGCTGACTCTGGTCGCGATGAACCCCCGCGAATCACATAACGACATGGCAAAGCCCGCATGAAACCGCAGGTCAGTAAGT # Right flank : TGGAACGGGATGATCGACTGGTTCAAGGGCCTGCGCTTCCCCGCGCGGGCGCCCGTAGTGGGTGTTGAGGACGTGGTTGAGGAGTGCCTCGTGGGCGCTGGGCAGGGGGCGGACGAGTGTGTGTATGTGAGGATTTTGTCGGTGGCGCTGGTTGCGTCATATGCGTTGAGGCGCGGTTGCTGCGGGTGACGATGCGCGTGGTGGTGCACTGAGGCATGCGGCGAACGGGCCGGGGGCAGGTGAGGACGAGGGTGTGCAGCAGGGCGGCGGTCAGTCCGCGTGCGGATGTGCCGGCGGTGGCGAGGACGGTGTCGAGCCAGGCGGGGTCGGCCTGGTGGAGTGCGGGGTCGGGGAGGGGGAGGGGGAGGGTGCGGATGGCGTGGAAGAGCGCGCGGTGGCCGGCGTTACCGAAGTGCTCCGGCCGCAGGTCGCGGATGTCGGCGCGCCGGTGCGGTTGGAGGAGGAGCGCGCCGAGGAGGGCTTGTTCGGCGTAGTGCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 354100-356276 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 354100 29 100.0 32 ............................. CCGGAGAGGACCTCGCGACTGATCAGGCACTT 354161 29 100.0 32 ............................. TCGCCCGACTTGTCCGCCCCGGCGGTGAACCC 354222 29 100.0 32 ............................. GTACCTGATTGGTACCTGTCGTGTGGAGTGAT 354283 29 100.0 32 ............................. GGGAAACGCGGCCGGTGCTCCGCGGGCACCGC 354344 29 100.0 32 ............................. ATGTTCAGCGCGTCGGCAAGGGCCTCTTCGAA 354405 29 100.0 32 ............................. ATGCTGCGCACCCGCCGCGCCACGCCGTTCGG 354466 29 100.0 32 ............................. ACCTGGGCGCCCTGCTCGCCGTCGGCGCAGGT 354527 29 100.0 32 ............................. CTGTTGGCGGAGAACACGCCGCCGCGCTGGCG 354588 29 96.6 32 ............................C GGCGCCCCCGGAGTCCCGGAGGCGCCGTTCGA 354649 29 100.0 32 ............................. GTACCTACGAACGACCTTGACCCAGGGGAACT 354710 29 100.0 32 ............................. CGGACCGCGACCCGGCGGGCGCCGCGCCGCGC 354771 29 100.0 32 ............................. CAGCTCGCCATCACCGCGTTCGTCGCGGCCTA 354832 29 100.0 32 ............................. CTGGAGTCTCCGTCCGCGACGCCGGACGCCTA 354893 29 100.0 32 ............................. CGAGCGGATGCCCGCAGTGGTGCAGCCCCATG 354954 29 100.0 32 ............................. GATCTTGTGGACGATGCGGGCCACGTAGGTGG 355015 29 100.0 32 ............................. AGAGGGCCGTGGGCGCGGTCGCCGAGGTAGGT 355076 29 100.0 32 ............................. GCGAGCGCTTCGGGGTTGGTGCCAGCGCGGCG 355137 29 100.0 32 ............................. CCGGACGGCGACCGCGACCTCAGCCAGCGCGA 355198 29 100.0 32 ............................. CACCGCTTTTCGCCTTGCCGACATTCGGCGGA 355259 29 96.6 32 ........................A.... CGCTCAGGAGGTGCGGGTTGAGCTCGGGCGAG 355320 29 96.6 32 ............................T CAGGTAGGCAGCCGAGTGGCCGACGCGGGCGG 355381 29 100.0 32 ............................. CCGCACAACACGGACTCCCGGAAATGGGATTC 355442 29 96.6 32 .........A................... TCAGCCAGTGCTTCCAGCCGCTCCCACGGGAT 355503 29 96.6 32 .........A................... TCAGCCAGTGCTTCCAGCCGCTCCCACGGGAT 355564 29 100.0 32 ............................. CGACCCGCTACCTCGACGCCGCCGAGCAGCTG 355625 29 100.0 32 ............................. GGGTGTCAGGATTCCGGGGGCGCCGTGGTCTA 355686 29 100.0 32 ............................. ACCAGGACCACGGTCACGACCAGGGCCGCGCC 355747 29 100.0 32 ............................. TCCTCGCCAGCGGTGACGCGGTACTCCCAGGT 355808 29 100.0 32 ............................. CGCCTCGGGCCGGGGTGGGAGATGCCACGCGA 355869 29 100.0 32 ............................. GGCATGCGGGTGCTGCATCATGGCTCCTAGCT 355930 29 100.0 45 ............................. GCGTGGCTGGGGCAGCCCCGGTTCCCCCGCATGTGTTCCCCGCAT 356004 29 100.0 32 ............................. CTCGCCAAGGAGCAGCGCAGGTCGGCCGCCCA 356065 29 100.0 32 ............................. AACCCGCGACGAACGACGCCGTACACCGGCAC 356126 29 100.0 32 ............................. CCGGGATTGCCCGCGAGACGGGACTCAGCCGG 356187 29 96.6 32 .......G..................... CGGTTGATCCAGGCGGCGCGGGACCCGGCCGC 356248 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGGTGTGCCG # Left flank : GCCCCGACGCCAGCAGCCGGTCGAACAGACTCCTCACCTTCACCTGGAAGGAAGGGCTGATCTTCCCGACATCGTGCAGCCCGGCCCAGAAACAGACCGCCGCACGCATCTCGGCCACCGAAAGTCTGATCTCAGCGGCAAGGCGCCCCCGGACCGCCTCGTCGAACCAGACATCCCACAAGGCTCCAGCAACGGCCGCCGTGTCGATCAGATGGCACACCACCGAGTACGGAGCCGGCAGACCGCTGTCCTTGCCCCACAAGCAACAATCGATCTCACACACTCAGACGCCCTTGCCCCTACCATCCACTGGTCTCGCTCCCACATCCGACTACGAAGACACTCAAGCAGCCACCACTGACAAAACCCGCTGACCAGGGAGAGAACAGAAGGAGCCGACCATGACACCCAGGCACCCGCTCTGGCCCTCACGGCACACAGAGCACGATCCTGTGAATAACGAATTGGCAAAGCCCAACTAACACCCCAGCTCAGGAAGG # Right flank : GGACCGGATGTCTTCGACGGGCTGTAGTGGGCTCAGGCAAAAGTTCCGTGATGCGGTGACGTAGTGTCACTCGAGGAGGACTCATTTGCGGAGGAGGGGGAAGCTGGCCCGGCCGAACTTCTGCCGTTTGAGCATCTTGATCCGGTTGACTGTGCCTTCCACAGGCCCGGAGTTCCAGTGCGTGGTGAGTCCCGCCGTGACCGCGTTGAAGTCGCCTTTCAGGTGTTCGGCGAAGGTGCTGATGCCAGGCAGGCGGGAGCCGTCGGCGATCCACTCGGGCAGGCATTGGCCGTCGAGCGTGGCCAGCATCTCCGCGAACGAGCTGATGAGCCGTGCCGCCGTCTCCAGCTCCGGGCATCGGGTGAGTACCGCCTTGCGATGCAGTTTGTCCTCTTCGGTGAGGGTGGCGGGGTGTCGGGTGAGCCATCCGGTGACCTGCCGGATCGACGGTGGAACCGATGGAGGCGGGGCTCCTTCCAGGACTGGGAGTTCTCTGCGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGTGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 358786-358079 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 358785 37 100.0 37 ..................................... TGATGTGGCGCCTGGCCCTCGGCACGCGCGGACAGGT 358711 37 100.0 36 ..................................... GGCATGGCGGTGATGTCGGCAGTGGCTGCAGGTCTG 358638 37 100.0 36 ..................................... ACCTTGTGCCGGCCGAGGCCGCGAAGCTCCCAGAAG 358565 37 100.0 38 ..................................... AGCCGCTACGGGTTCGGCGGGCTCACCTGGCACAACTA C [358559] 358489 37 97.3 37 ........G............................ CCCGCCCTGGCCGAAGCGGGCACTGATGGTGGCCGGG 358415 37 100.0 37 ..................................... CTGGGCGGCGGCCTCCCGGTCAGCCGTGGCGTCCTTG 358341 37 97.3 38 ...G................................. GAATTGTCGACATCGGCGGTGTCCATCGGGACGGACAG 358266 37 97.3 38 ...G................................. ACCCTGTCGACACCCAACATCCCCTACCTCGCGGCGGG 358191 37 97.3 39 ..........................C.......... TCCTTGGCCTCGGCGAGGAGCACCGCGCGGCGGCGACGG 358115 37 86.5 0 ......T.................A.C...A.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 97.6 37 GTTCCACCCCCGCCCTCCGGGGCGGCTTCATTGAAGG # Left flank : GACGGGCCGAAGACCACCTACCTCCCGAATGGGCCACCCCGTCCACCCGCTGGACAAGCACAACCCCGTTCATCCCCCCGCACCACCGCAAGAAGAAGCAGGAACTCCACACCTACCTCACCGCCGAAGTCACCCGCGAACTCGCCCACCGCGGCCTGCCGGCACCAGCCTGCGTCGAAACTGTCGCCGGTGCATGGGGCCTCCACACCCGTCACCGCCGCACCAAACAGGAAACCCTCACCACAGCCCGCCCCGCCTACGGACTCCGCCTGACCTTCCACGAACCACTCACCGGCCCCCTCGCCCTCGGCCACCACTCACACTTCGGCCTCGGCACCTTCAACCCCACCCCCTGACACACCGCCACCCAACCTCGGAACCACAAGCATGCCCGGAAACCCCGCACCGCACCGAAGCAAAATGCCGGAAATCACCCGGCATGCTCCCCGCCTGCCAAGTCACCGACACCACAGCAACACCAAACCCCCAGCTCAGACGCC # Right flank : GTCTAGGACGGCCTCTTTTGGGCTCTGGCACAAGTTCCGTGCGGCGGCTACAGGTTGTAGTCGTTGACCGTGTTCCGGGCTGTGCGGAAGTCGCCTTGATTTCGCTCATCGATCGGCTGGTCTGGCTGGCATTCGGTCGCCGTGAGCCAGGTGTTGTCCCAGTTGCAGGAGATGCTGTTCCCGTCGGTCGCCGGCTTGGCGATCGTGTCCGTGGAGACGGTCGGCGAGTCGATACGCGTCGAAGCCCGTTGCACGGCGACGGGTGCGGTGTGTCCGGACTGCGGGGACTGGTCGGAGCGGGTCCACAGCTTTTACCTGCGGTTTCCGGCGGATCTGCCCAGTGCTGGGCGACGCGCGGTGCTGGCTTTGCGTGTCCGCCGGTTTCGGTGCCTTCTCCCGTCCTGCCCGCGGCGGACGTTCGCCGAGCAGGTGCCCGGGCTGACGCGCCGGCTCGGGCAGGCCACCGAGCGGCTGCGGTCGGCGATGGGCTCGATCGGCCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCACCCCCGCCCTCCGGGGCGGCTTCATTGAAGG # Alternate repeat : GTTGCACCCCCGCCCTCCGGGGCGGCTTCATTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 366219-367200 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 366219 36 86.5 37 .....G...........C..G..A..-.......... CGGCGATGTCGCGCTCCAGCGCCTTGAGCCGCAGCTC 366292 36 91.9 36 ....................G.....-........G. CGACCTCGACCTGGCAGACGTTCATGGTGTTCGTCT 366364 37 78.4 25 ..........................ACCT.C.TTG. GTCGGCCGCTCTCGATGTCACAGAG A [366389] Deletion [366426] 366427 37 100.0 38 ..................................... CGGTACCACCGCACCGCGCGCGCCCCGTCGGCGCCCGG 366502 37 100.0 36 ..................................... GCCGACGGAGCCCGGGTGCGTGGACCCGGTGCTGTT 366575 37 100.0 36 ..................................... GCCGACGGAGCCCGGGTGCGTGGACCCGGTGCTGTT 366648 37 100.0 35 ..................................... TCCGCGTCGATGTCCTCGATGCCGACCTCGGCGGC 366720 37 100.0 37 ..................................... GTATGCCGCGCTCCTGCTGGTCGCGGTCGATGCTGGA 366794 37 100.0 37 ..................................... CCGTAACCGGCATCGTGGACGCCTTGCCGCACCTGGT 366868 37 100.0 38 ..................................... GGCTGCACGTGGTCGACCTCGGCGGGGTCGTCGACGGT 366943 37 100.0 35 ..................................... CTCCGGACAGTGGGCTCCAACCTCCTGGAGATGGT 367015 37 100.0 37 ..................................... CTCCGGAGTCGGTCGCCCAGGCCGCGACGGCGGCGCG 367089 37 100.0 38 ..................................... CAGAGCTTACTTTTACTTTTTTCCCTAACACGTATAGA 367164 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 96.9 36 GCTGCAATGGGGCCGCCGCGCAGGGCGGGGGTGGAAC # Left flank : CACGAACACCGCCGGTCCGAACGGATCCAACTGCCACGCGTCATCGTCCCGGGGCTCCCCATCCATCAGGACATGCACCGCCACCCGGTCCGCCAGTCCCAGCTCGTCCAACCACCCCCGGACCTTCTCGGTGACCTGCTCGACCAGCGTCCGCATCGGCAGCACGTACACCAACCGCCCCGGCGTCTCCCGACGCACCCCCACGTCCGGATGCTCCAACAACCGCCACAACCACGGCAGAACCGCCGCCTCCGTCTTCCCAGACCCGGGCGGCACCCGCAACAACTCAGGCAACCCCTCCTCCGCCACACGCTCCTGGAACGGAAACGGCCCAAACCCCGTAGCCCGACGCATAAAAGCCTCGAACGACACACCCACCTCGCACACCCCTCCCCCAGCGCAAACCGGCGACGACCACATCACGCGCGCATACTGCCACCCGCCACTGACAACAGACCGTCCAGCAGCGGACACAGAACGCACGTGCGAATCAGTGACAT # Right flank : CGGCACCCCACCAGGGGCTTCGCGTTCCATGGGCTGCGACGCTGACGTCAGTCGGGGAGACATAAGCGCCACTATCGGGCATCTGACTTCGGTGAGGCACCGGGTTTCTTGGCATGCTTGTGGTTCCGAGGTGGGAGCGAACAGACCACCGAGTGGCAGCTTCTTCCCCCGGGGGCATCTGGGCAAGTCGGTCCGGCACGCGTCTCCGGCTCACCATGGAGACGCCGAGCCGGACCAAGCGTCGCCCAACGCACAGGTCCGGTTCACCAAACCGGGGAGCCACCGCATCATGGACAGTCCACTGCCCCCCTGCCAGCCCTCTCGAAAGGCTCCTTAACACGTCGCACCCCTCGCCCAACTGCACAGCTACGCCGCAGCGTAGCTGTCACGGAAGTAGGGGCGTGCTCGTTTCAGGTCGTTCGGCGTATGGAGACGCAGTTCCAAGTTGCCCGTGCCGTGGTGCCCCTGGCCGGTCACGTCTCGTACGAGTCCGGGGAGCA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAATGGGGCCGCCGCGCAGGGCGGGGGTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 1361956-1363325 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1361956 29 100.0 32 ............................. TGCACGTAGAACGGGCGGAGATCAGGGTGAAG 1362017 29 100.0 32 ............................. GAGCCACGTTGAGCGCCTCCCGCACTTTCACC 1362078 28 96.6 32 .....................-....... GGGGTAGGGTCGGACATGTGTCCGCCTCCTTC 1362138 29 100.0 32 ............................. AAGAGGATGCTGAAGCCGGTCGCGGGGGTCGC 1362199 29 100.0 32 ............................. CGATCCGGGAGCGAGTCACCGGCTCCAAAGCC 1362260 29 100.0 32 ............................. ATATGCCCGTCGGCAACCCGACACCCGACAAG 1362321 29 100.0 32 ............................. GAGACCGGGTTGGGTGCCGTACGTATGCGGAC 1362382 29 100.0 32 ............................. TACGCGCCTATATCGGTCGAGATATCCCGGAG 1362443 29 100.0 32 ............................. CCCGCCCCGCAGAGATAGCACCAGTAGGCCCC 1362504 29 100.0 32 ............................. CTGTCGGGTCCGATGCCGGTGCGGGTGTGGGT 1362565 29 100.0 32 ............................. CAGCAGCAGCGCGAGTTCGGCGACGTCCAGGA 1362626 29 100.0 32 ............................. GCACCCATGTCTGACTCGACTCGCCGGACCCT 1362687 29 100.0 32 ............................. TCCTCACGAGCACCAGCGACGTCACTGCCTCG 1362748 29 100.0 32 ............................. GTCATCAGGTCGCCGTCGAGGTCGTTGACGGT 1362809 29 100.0 32 ............................. TCGGGGAGGTAGGTCGCGCCGGAGGGGAGGGT 1362870 29 100.0 32 ............................. TTCCGCAGCGGCGCCCTCCACACCGAGCGGGT 1362931 29 100.0 32 ............................. GTCATCAACGCCTACAACAACCTGCCCGCGCC 1362992 29 100.0 32 ............................. ACCTTCGCGGGGCGGCTGAGGATCGGGTCGCC 1363053 29 100.0 32 ............................. ATCCTGTCCCGGGTCTCCCGGTTGAGGACGAA 1363114 29 100.0 32 ............................. AAAATCGCCGCCGGGAAATCGACGCTGGCCGA 1363175 29 100.0 32 ............................. GGCCGCTCGCGGGACTCCTTCACCCTCTTCCA 1363236 29 100.0 32 ............................. TGCCGGTGGATACGGACAGCCGGTTCTTCGAC 1363297 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGCGCTTCCGCCCGAGCAACGAGCGTGCGCGTCTTCCAGTGCAACCCGGCACGTCCGTCCTGCTCGTCGCCATCGGACGGCTCCGGCCAGGACACGACGGGCAGTTGGGGCAGTCCGAGAAGGGGAGCGATGCACTCGTTGGCATCCTCCTCCACGTAGTGGCCCAGACGACCTCACACGGCAACGCCGCCAACCGCCGCCCATGCGCGGGATCGATGCGGCAGAGCAGCGGATTGGTGTCGAGCCCCACCGCATAGGTCGGATACTGCCCCGACACGGCACCGAACGGAATGAGCGGCCCATCGACATCAAGAAACAACAACGGCAACCGCGCACCCATGCGAGGACGATACGCGGCCGACCACCAGGCAATTGGCTCTGGACACCTCCCGCCCCTCTCTCGCCCCACCACCCGCTACTTCTGTCACCATGGACAGATGACACCGCCCGACAAAGGCAAAGAAACGGCAAACCCGCTCTAACACCGCAGGTGGCGAAGG # Right flank : GCGCCCAGCGAACGTCGTCTTCCCCGAGCCGCTGAGCGCATCCCCACAGCGCGGGTGGCGCTCACGCCCGAGCATGAGCGCCACCGTCGTCCCCGGTTCGGTGACTTACGCTGTTCAGCTGGCCCGGAGGGTGGCTCGCCACCGACGCATCCTCAAGGGGCCACCCGATCGCTACGCGGGCAAGGCAGTCGGTTCCTTCCCTCCTTCCTCGGGACGGATGGCGACGAGCGTCAAACCGTCGAAATCGACGGGGACCCGGCGGCGTTCACCGGCCGTTCGGAGGGCGTAGCCCTGTTCATTCGCCTCCGGATGCACGAGGACCGCCGCGCCCGTACCGATGGACGCGCTTACCACGCGCCACAGTTCGTCGCGTACACGGGCTGAGAGAGTGCCGACGTAGAGGCCGGGTGTGGGTTCGATCATCCAACGGGTGAGGGCGCCGCGGACATGGTCCGGAACCGCCGTCGTGGAGAGCACAGTGATGGAGGACATGAGCCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1373444-1374693 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1373444 29 100.0 32 ............................. TGCCGGTGCCGGATCACGCCGAGACCGAACGT 1373505 29 100.0 32 ............................. ACCGACACCCGGGGCGGCTACCACCTGCCGAT 1373566 29 100.0 32 ............................. CTGGCGAAAGGGTGGAGTGACGCGAGGCTGAA 1373627 29 100.0 32 ............................. CGTCTGCGCTCCCAGGAGCGGGCCATGTTCGC 1373688 29 100.0 32 ............................. CGGAACCGGATCTCCTGGGTGGTGAATCCGCT 1373749 29 100.0 32 ............................. AGTAACGACACGTCAGCCTCCTGGGTACGTGG 1373810 29 100.0 32 ............................. TCTGGGCGGAGTTCCCGAGGTCGATGCCGGGG 1373871 29 100.0 32 ............................. ACCTCGGGGCGGTGTCCCAAGTCGGCCAGCCG 1373932 29 96.6 32 ............................T ACCGGATCGCCACCCCGGCGACCGCGGTCTCC 1373993 29 100.0 32 ............................. CCCCGGCCGAGTCCGCATCCGGCGCGCGCCCG 1374054 29 100.0 32 ............................. ATGATTGCCGCCGGCGTCCCTTGGCGTACGAC 1374115 29 100.0 32 ............................. AAATGCGACGCCGATAGCCTCCCAATACCGGG 1374176 29 100.0 32 ............................. CCCGTGTCCCTGCCCGTCGGACGAATCCGCAG 1374237 29 100.0 32 ............................. ATGCCTTATCGCTGGGCTGCTCCACCGCCCTC 1374298 29 100.0 32 ............................. GTCGGGGACGGCTCGACGTACCGGTGGTGGCT 1374359 29 100.0 32 ............................. ACGGCCCGGACCACCGTCACCGTCAGCACGGC 1374420 29 100.0 32 ............................. GTCGCCTCGCCCACGGTCATACGGAACGCGTC 1374481 29 100.0 32 ............................. GCGACCGCATTCACTTTCGCGTCGGACGGTGG 1374542 29 100.0 32 ............................. CCGTCTTCGGCGGCCGGCGCCGAGAATCTCGT 1374603 29 93.1 32 .........A..........A........ GCGTTGGAGCGCGTCGGAGCCAGGCTTACCAA 1374664 29 96.6 0 .........................G... | G [1374687] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : ACTGCGGCAGCGCCCGATGGGTCGCGATCTCGTGGCGAATCTTACTGACAGGGCTGTCGATCGAATGACTGTGCGCATATGTGGGTTCACGCAGGAACGCACAATGCTCCGCTCTGTCTCGCGCGATCATGTGCTGGAACTGCGGCATGATCTTTCCGAGATCATGCAGACCAGCCCAGAACATCAAAGTCCGCCTGGCCTGGTCTGGCTGCATACCCAACGCCTGGGCGATCGATCGCCGCTGCCGCTCGGCCAGCATCCGGTCCCACACCGCACCACAGACCATCGCTGTATCGATGAGATGCCCGATGACGGGGTACGGCTCGTCTAACCCGCTGGACTTCCCACACAACCGCGCATCGAGCACGCCACTACCTCGCTCCTGCCGACTTCCCAGGGCTGCGTACTCAACCACACAGGTCTGACAACATGAGGGGGTGACGGAAAAACCTTGTGGTCAAGTAATGGCAAAGGGCTCCTGACGCCGCAGGTCAGAAAGG # Right flank : GTTCGGTTGGCCGGGGTGCGGTGCTGGCCCTGTCGTACCTTCGGCAGGCGGGATCCGATGGGGAGAACGGTGAGGTCAGTCCTTGCGGCCGGTCGCGGCCACGGTGATGCCCAGGCCGATCATGGTCAGGCCGCCGATACCGCCGACCATGGAGAGGCGTTGCGGTGAGCGGCCGAACCAGTCGCGTGCGGTGGCCGCTGTCAGGCCCCATGCGGTGTCCGACGTGATCGCGATGACGTTGAAGACCAGGCCGAGCACGAGCATCTGGAGCGCGACCTGCCCCTGGTCGCGGTCGACGTACTGCGGCAGCACTGCTGCGAAGAACACCATGGTCTTGGGATTCGTCACACCGACCGCGAACCCCTCCCAGAATGTCCGCCGTCCGCCGTGCGCCGCCCCGCCGGCGGTGAAGGCGGCCCGCAGCGCGCCGCGTTCGCGCCATGCCTTGAGTCCGAGGTACACCAGGTAGGCCGCCCCCGCCAGCTTGAGCGCTGTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1521987-1522442 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1521987 29 100.0 32 ............................. GGGGGGTCCCCGGAGGGTTCCCGTGGGGTTCC 1522048 29 100.0 32 ............................. ACGCCGCCCCGGCGACCATTGCTTGGCCGCGC 1522109 29 100.0 32 ............................. AGCTTTGCCGTCGGAACTCTTGACGGTGTCCT 1522170 29 93.1 32 .............GA.............. GTGATCGCCGACCTCGGCGCGGCCGGCGGCGG 1522231 29 93.1 32 .............GA.............. TTGGCCGACTGCGAGTCGATGAAGGTCGGTGA 1522292 29 93.1 32 .............GA.............. CTCGTCTCGGCCGGGATGGCGACGCCGGTCGC 1522353 29 100.0 32 ............................. CGCGGCTCAATGTCGACCGCGGCTCGTTCGGC 1522414 29 86.2 0 ..............A...........TTC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : CAGGTGGCCGACGGGCCGGCGCTCTACCCGGAGGGCCGTGCCGACGTGGTGGTCTGCAACCCGCCGTGGTTGCCGGGCAGTCCGTCGTCGGCTCTGGAACGGGGCGTGTACGACGCGGACAGCGGCATGCTGCGCGCCTTCCTGACCGGCCTCGCCGCCCACCTGGAACCGGGCGGCGAGGGCTGGCTGATCCTGTCGGACCTGGCGGAACGGCTGGGACTCAGGCGGGAGGACGAGGTCACGGAGGCGATCGCAGCGGCGGGCCTGCACGTGGTGGACCGCATGGACACACACCCGAACCACCGCCGCGCACGGGATACGACGGACCCCCTCCACGCGGCACGCGGAGCGGAAGTCACATCACTGTGGCGGCTGTCGGCACCCTGAATCCCACAACTCCGACCAGACCGGCCGGGAACCTCTGCGACCATGGGCGGGTGCGGCAGCAGACGCCGAATCACGAAACGGCAAAGTCCCCCTAACACCCCAGCTCACCAAGG # Right flank : CAATGCGTTGGCCGAATCGGGGTGTCCAGGCCAGGATGCGGTTGTGCGTGATGTCCGTGAGGATCCCGAGTTGCTTGGGCTGGTTCGCCGCTTCGTCACGCCTGACCGGCGGTATCTCAAGCTCGGTGGGGGGCTCCTGGGCATGGCCGAGGACCGGCGCGTCGAGTTCCTGCGGAGGGTCGGTGAGGCCGCCGGCGGCATCACGGCCCGGGAGTTGACCGTCCTGTTCGAAGGCGGTTGGCGCGAACGCAGAACGGCGGCCTGGCTCGTCGCTGTCTCCGGCAGGACCGAGTTCCGTGAACGTCTCGGCGAACTCCTCCTCGCCAGCGGCGGACCCTACGCGGGTCAGGCGTACTGCGTCGCCCTCGCTGCGTTCGGTACCCCCGCCGACGCCGACCTGCTGGCCGCGTACCTCGACCACTACCTGCGGCGCCCCGACCTCTTCTACGACCAGACGGCCGCCATCGGCGCGCTCCTGCACCTGGACGCCAAACTCGGTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : GTGCTCCCCGCGCGAGCGGGGGTGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 1711850-1712732 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1711850 29 100.0 32 ............................. GGTGAGGCTGGACACGACGAAGCGCCCCCGCC 1711911 29 100.0 32 ............................. CGGGCGACGTCGTGCCGGTCGAGTCGTCGCCC 1711972 29 100.0 32 ............................. CTCGGGCGCGCCCTCGGTGGTGCCACCACGGC 1712033 29 100.0 32 ............................. TTCGCGGCGTGCGACTCGATCGCGCGCTCCCA 1712094 29 100.0 32 ............................. GCTCCTACACTCGTCGCGGCCGGCGTCGACCC 1712155 29 100.0 32 ............................. ACGGAGCTGACGCTCGGCGCGCAGGTGCATCG 1712216 29 100.0 32 ............................. TTCAGATCGGAGACCGAGTGCGTGTGGTCCAC 1712277 29 100.0 32 ............................. CACTATGCCCATCTACGACCGGACCGCGCTGC 1712338 29 100.0 32 ............................. GTCATCAGGTCGCCGTCGAGGTCGTTGACGGT 1712399 29 100.0 32 ............................. GATCACGCGTCCACGTTGCAGATGGTGGGTGG 1712460 29 100.0 32 ............................. GATCACGCGTCCACGTTGCAGATGGTGGGTGG 1712521 29 100.0 32 ............................. GTACGACGCGCAGGTGTCCACGGCAACAGCCC 1712582 29 100.0 32 ............................. CGACTGGTTAAGGGCTCACGCGGGGCGTTCCG 1712643 29 100.0 32 ............................. GCGGGCCGGATCGTGTCGCCCGAGCGCGGCCG 1712704 29 93.1 0 .....T......................C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TTGGCCGCGTCCGGGTACTGCGCACGGTTCAGCTCGGCCCGCGCACGCGCCTCCGGGCTGGGGTCGGGCACGATCAGCATGACGTAGCCGTTGCCCTGCGGACCGCCGCCCTGCCACACGTCCGCGTACTCGTACCCGAACTGCTCGGCGATGAAGGCGAGTCGGGTGAGCCTCGTCATCGTCGCGAAGGTGAGGTCGACCTTGACGGGTTCCCCGCTCTCCATCTGCCGCAGCATCTTCGACGCGTAGCGCATGCTTGTCCGGCCCCCGTTCCTCACCGCACGTCCGCAGACTTGCCGATCGCAGCAGCAACCAGCGGACGGATGTCGCCGCCAAGCGTAAGCCCGGCTTGAGCGGATCCCACCGCCGCATGGGCCGAATCAGCACCCGTGGTGGACGTGGCGGAACCACCGACGAGCCTCTGCGACCATGTAAGGGTGACGACGGGCAGACAGGATCACGGAACGGCAAAGCCACTCTGACACCGCAGGTCACGAAGG # Right flank : CTCATGGTCCCGTGCCCGCGTCCGCCTTGGGAGGCGGCGACGGGCACGGGGTGAGGGGATGGTGGTCAGGCGGATACCTCGTGCAGGATTGTTGCCAGTTCAGCCGGTTTGTCCAGCATCGGCCAGTGCCAGCCCGGCAGGTCCCTGTGGTCCCAGTCGTCGCCCCTCATGTGCTTGAAGGCCGGTACCGCGTCTGCCATGGTCCGGACCGTCTCGATCGTGAAGCTGCACAGCACGTGCAGGCGCGGCACCTTCTCCCAGGCGTCCGTCAGTCGTACCGGTGTCGTCGCGGTCGCCCATGGCTGGGGGGTCGAGAGGCGTTCAAGACGGTCCAGCGCCTCGTCCGACAGGTCGGCGGATCCGTCGGCGAGCTGTCGCCACGGCGGCGGCGGGAGTTCCCGGCCGTGGCCGGCCGTGCGGACCGCCTCGGCGTTGGCGGCCCGCTCCTCCGGTGACGTGAACTCCGCGTGCGACATGCCGTCCGGCAGCGGCCCGCTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 1773741-1774572 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1773741 30 100.0 36 .............................. GCGGCGGCACACCGGGCCGAGGCCGTCCCGCGAGGG 1773807 30 100.0 38 .............................. AGTCCGGTCTCATCGGCACCGTGGCCATGGCCAATATC 1773875 30 100.0 39 .............................. ATGACGGCGACTTCCACGATCCGTGCCTCGTGGTCGAGG 1773944 30 100.0 37 .............................. GGCGTGATGCCGGTCTCCTCGCGGAGTTCCCGCAGTA 1774011 30 100.0 35 .............................. TCTTCGACGAGCTGCGCGAGCATGGCGCTGATGCC 1774076 30 100.0 37 .............................. GGAGGGGCCGGGAGGCCACCACCTCTACGACGACGGG 1774143 30 100.0 38 .............................. CCGAGCAGGAGCGGTGCGCCGCGTGGCTGTCGGAGCAG 1774211 30 100.0 37 .............................. GGAGCGCGCCGAGGCCATCGCGCGCGCTGATCTCCAC 1774278 30 100.0 36 .............................. TCCACTCGGCCGATGAGCCGCGCGGCGCCTCGGGTC 1774344 30 100.0 35 .............................. CGTCGCCCGCCGGCGCTGTAGGTCTGGCAGGGCGG 1774409 30 100.0 37 .............................. ATCGTCCACCGGTCGGCGGTGGGGCTGTACCGCGCCC 1774476 30 100.0 37 .............................. GTGGTGCGGGCGCGGGAGCAGACGGGGCAGGCCCGTA 1774543 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.7 37 GTCGTCATCGCCCCTACGAGGGGTACCAAC # Left flank : GGGACGGACCAAGCGCACCCCTGTACCTGCGCGGCGAGTCGGGTGGCGAGGAGATGTGGAGGACAGTTCGACTCCGAGGCACGGACGTCAGTCACTCAGTTAGTCACGCAGAGGCCCCCTCCCTTGCGGGAGAGGGCCTCTGACCTGTGGAGCTAAGGAGAATTGAACTCCTGACCTCTTGCATGCCATGCAATCCAGCCCCCGCCAGAGCAGCCCACATCGGCCCACTGACCTGCACGAACGTCCCCTGACGTACACCACGATCCGCGGCGCTCCACGCCCGTTGTCACTCACTTAGTCACTCACCCCGCGCCCTCGAACACGAAGACACCTTCTCTTCAGCACCGCGCGAACTCAGGCCGGGATGACATGATCAGTCGGGTGCGACCCTCCACAACTTCAGCGACACCCCGGGTCCGACGACACGACCGAAGGTCCGCTGCAAAACACCCTCGCACCCAGCGGCCACCAGCCATCCTGACCTGTGGCTTTACTCTGGG # Right flank : CAGACGGCAGCAGAGCCACCGGGCGGGTCGGCGGCCGGGGCCTCATCGTCTCCGTATAGGGAACGAGTTCCGCGCCGATGATCGACGACGCCATCGCCGCCCGGATGCAACCACCGCTACATAGCCGCCGCACGATGGTCGCCGGATCCGCAAACTGAGAGCAGCGCAAGTGCACTCACCGTTGATGAGGCGGCGAGGCCAGCCAGAGCCAGTCTCACCGCTCCATCGGGCCAAACGTTGCCCCTCTGAGGGGCGATGATGCCAACTTGCGACCACCACTTAGCAGGTAAGAAGCAAGTTGCGACCCCTGCACAGCCGTCACGTCCGCGAACGCTGGGGCGATGACACAGATGAGGATAGGCCGACAAGCCACCCCTCCCAAGCTTCTGCGTGCCTGTCGTTGCTACTTATCTGCTGTGTACCGCTTGTGCTGCGAAGCATGGGTCTGCTACGGTCCCCTCGGCCAGGGCCACTGTGGCAGGGGCCACTGACAATCAGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCGCCCCTACGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 1782149-1783980 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1782149 30 100.0 38 .............................. TCGAGGAGCAGCAGGGGGATCTCGGCGAGCTGCCGGAG 1782217 30 100.0 36 .............................. AGGCCGACCCGATCCCGCCCGCCGAGCCAGTGCCGG 1782283 30 100.0 37 .............................. AGGACGAGGTGACCGCCGCACGGCTCGGGGCGCCGCG 1782350 30 100.0 39 .............................. GCATCGAGGCAGCCGACGGCGCCGGGGCGTCCACCCCGG 1782419 30 100.0 36 .............................. GCCTTCGCCTGGGCGCGGGCCTTCCGCTCGGCCTTC 1782485 30 100.0 34 .............................. ACGAACGCGGTCAGGCTGCCCGGGGTGATGGCGG 1782549 30 100.0 36 .............................. CGCAACATCAAGCTCCTCGCCAAGGAACTGAACATC 1782615 30 100.0 36 .............................. CTGCCGGGTGGTGCGCAGGTGACTCCGCTGTCGCGC 1782681 30 100.0 37 .............................. GGCAGACCTGCCGGGCTCGACGCCCCCCGGTCATGGC 1782748 30 100.0 36 .............................. GCGGTCAGGACACCGAGGTCGGCCAGCGTGCGAGCG 1782814 30 100.0 40 .............................. GTGATGGTGCCGTCGAGGTCGATGCCGAGCGGCACGCCCG 1782884 30 100.0 37 .............................. CCGAGGCCGCGGGCGACCTGATCGCCGCCGGCCACCA 1782951 30 100.0 38 .............................. TCGTCGGCCGGACGGCGCGGCCACCTGCGGCGGCAGGC 1783019 30 100.0 36 .............................. TCGGTGGGTGTGGGGTCCGTGGCCGGCGGCGGCGTG 1783085 30 100.0 37 .............................. CTGCCACGGCCATAGCTCCTGTCGTGGCGTCCGACCT 1783152 30 100.0 37 .............................. TGCCGCTCCGGAAGGGCGTGCACCCGGGCCTCATCGG 1783219 30 100.0 35 .............................. GCCGCGGCGTGGTCCAGGACCGCGCGGGCGGTGAC 1783284 30 100.0 36 .............................. TCGCGCCCGCCCCAGATGCCCACGGGCTCGCCCATG 1783350 30 100.0 39 .............................. TGGTCGACGAGGGGCCGGTCGTCCCGCCCCGCTGGTCGT 1783419 30 100.0 37 .............................. CTCTGCCCGGGTGCGCGCCACCAGCCGAGGCTGGCCG 1783486 30 100.0 39 .............................. CTGCGGGGATCGGCCGGACGGCGACGGTCGCCACCAGGC 1783555 30 100.0 35 .............................. AGCTCGCCGACGGGCTCGACAGCCGGGACTCGCTG 1783620 30 100.0 37 .............................. TGGTCGTCGAGCGAGGGGAGGGGGCTGCGGCCGGCGT 1783687 30 100.0 34 .............................. CGGATGCGGGCGCCGAGGGCGGCGACGGCGGCGA 1783751 30 100.0 36 .............................. AGCACCGTCTGCCTGTCCAGCGCGCCCCCGTTCACG 1783817 30 100.0 37 .............................. GCGTGGAGGTGGTGACGGAGGACGAGCTGAAGCGCCG 1783884 30 100.0 37 .............................. GTGATCTCCCGGTCGCCGACGTACACGCGGGCGTGGA 1783951 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.9 37 GTCCTCATCGCCCCTGCGAGGGGTACCAAC # Left flank : ACCACTGCCCCCATCAGCTCGGGCTCTATCGTCCTTGCGGCGGATCCGGCAGGGCGTGGTGAGCCAGGCGGCGGTGGGCGTCTACGAGGGGTACCAACTCAGTCGGGTGGCGCCAGCCCTGGACGTAGCCCACGGTCCTCATATCTCACGGTGGTCCTGGCGGATCGTGGCATGTAGATCGGCCTTCGACTGCGAGTTCCCCATTCGCCTCCAGCGGCAGAAGCACACCTACTGTGCCACCTCAAGAACCCTGGTGACTTCAAGACGCAGCGACATGGCAAAGGAGGTCGGAGGCTGACTCCCAAGGTCACTTCGTAACGCCCCACTCTGAGACGAGAAACGGCTGCTGCTCCACCTGTGCTCAAATGAGATCATCGAAGAGTGCGGCCCTTCACGTTTTCAGCAACACCCCGGGTCTAACGACACGACCGGAGGTCCGCTGCAAAACGCCTTCACACGCAGCGGCCTCTACCCGGCCTCACCTGCGTCTTTACTCTGGG # Right flank : CTGTTGGTAGGCAGTGGTCACGGTGCGGTCTCCTCGGTCGCCTGGCTTTATCGAGCAGTTGTGGTTCTGGCTCAGTTTCCGTGAAGCGTCCACGGTGAGTGCCTACTGAGGCTGGAGCCGACCTCCGGGAAGTTGCCCGAAAATGATCTGTAGTGATCTTGGTGTGGTCGACAGTTCAGCGCCGTGGAAGAGACGCTGCTCCGGTTGGAGGAGCTACTGTTCCCGTCGATCGCGGACGTGGCGGTGCTGTCGGTGGACGTGAACATCAAGGAGTTACGGATCGAGGCCCGCCGGACGACGGCCGGCTCTACTTGTCCGGACTGCGGAGCCTGGTCAGGGCGGGTGCATAGCTCCTACCTGCGTTTTTCCTGCCGACGTGCCCACCGCGGGACGGCGGGTGGTGCTGAGCTTGAAAGCATGTCCCCCAGTGCCATGGTGACCACCATAGTCAGGGGGCGGAGTGACGGACCGGGACCGGGTGCGCCCGCCTGGTCAGATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 11 2680538-2681523 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2680538 29 100.0 32 ............................. GAGCGCCTCCGCCGCGGTCTCGCCGTGCTGAT 2680599 29 100.0 33 ............................. GTCACCGCCTCGACGGTGTCCGCCGCAATCGCA 2680661 29 100.0 32 ............................. AGGCGGTGGTCGAGGTCGGCGACGACGGTGCG 2680722 29 100.0 32 ............................. TGGGGCCGACAGTACCTCTCAGCGCTGACAAG 2680783 29 100.0 32 ............................. TAGCCGTCCGCCAGCTTCCGGTAGCCGTCCAC 2680844 29 100.0 32 ............................. AGAACCACCGAACCGATCAGCTCAGGCGTGGC 2680905 29 100.0 32 ............................. ACCCGACCGTACAGGCGGTCGGCATTGGTGGC 2680966 29 96.6 32 ............................C TGGCCGCGTCGGCGAGGGCGTCCGCCGCCTTC 2681027 29 96.6 32 ............................C TGTGGCGAGTGTGGCAGGCCAACGGGATGGAC 2681088 29 100.0 31 ............................. TGCGGGCAGCGCAGCTCACCATCGACGTACA 2681148 29 100.0 32 ............................. AAACGGCCGGGACTACGGTCTAAAAACGGCCT 2681209 29 96.6 32 ..C.......................... CCCGGCTACCTCTACCTCGCCGGCCTCGGCGC 2681270 29 96.6 32 ..C.......................... GGGTCCCAGTCGAGGAGCGAGTCCGTGAGGTG 2681331 29 96.6 32 ..C.......................... GTGACGCGAAACTTCGGGTTGCCGAGACTGCT 2681392 29 100.0 32 ............................. GGGGAGGAGTACAACGAGCGCGGCACCCGCTA 2681453 29 100.0 14 ............................. CCACGGTGCGCGCT Deletion [2681496] 2681496 28 82.8 0 C.CA..T....-................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 31 GTGCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCGACCTCGGCGAACTCGGCATGACACCACGCGAAGTCCTCACAGTGACCCGCTCACTGCGCACCGGAGCCAGCGGCCGAACCATCCTCGCGCACCTGCCGAGAGCCATCCAACAACGAGTCCTGGCCGAACCAGTCCCCACCGAAGCAGGCCCCGGCGCCTACCAGGACAACGACGCACTGCTGCGCTCACTGGAACAGATCCGCGAACAGGGCTACGCCACCGGCTTCGAGGAATGCTCACCGGGCTGGAACAGCTGCGCGGCCCCCATCATGTGGGGCGACCTGATCATGGGCTCGGCACTGCTGCTCAAACCGGCAACCGTCATGCCGCACATCACCGACACAGTGATCACGGCAACCAGAAAAGCAGCAGCAGAACTCAGCGCCTACGCACGCCACCCAACCCCGAACCAGCACCTCTGAGACCATGAACGCATGACCACAGACGCCACCAGTCAAGAAACGGCAAAGCCGCTCTAACACCGCAGGTCAAAAAGG # Right flank : GTCCCCCCTCTGGTTGTACCGTCACGGAACGATCACTCTGCCGGTATGCCCATGTCACTTACGGCAAGCTCCTGGTCATGAGACTCACCCGCGCGCGGCACGGCATCGTGGCCGCGTTCACGACAGCCGCACTTACCCTGGCCGCCGCCGCATGCAGTTCGGACGGCGACGATGGCAACCGTCCATCCGCCGCCGGCGGCTCCCGGGAGCAACTCCGCCAAGCCGTCGAGGACAACCTCGCCGCGATCAATGACGGCGACGTCGATGCCCTGCTCGCCAGCCAGTCCGCCAACTGCCGCGAGCGGACCACCCCCGAGGAGACCGCCCAGGCACTCGAACTCATCGACGCCTTCTACGGTGACGTCTCCCTCGAAGACCTCGACATCATCGAGTTCGACGGGACGACCGCCCGCGTCCGCGGCACCACCGGGATCGAAGCCATCGACGAGTCCGGCGACCAGGACGGCGCACGCTGGATCTGGGAGGACGGCGCGTGGCGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 4001643-4001916 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4001643 29 100.0 32 ............................. CCGTTGACCGTGACGTGCGGGGCGGCGGCGCG 4001704 29 100.0 32 ............................. TGCACGCGCGCGCTCGGCTCCGGCGGGCGGAA 4001765 29 100.0 32 ............................. AGGAAAAACGGCTTGTGGCGGACCCACATTGA 4001826 29 100.0 32 ............................. GAGGACGACCAGAGCCTCCCCGCCGCGCTCCG 4001887 29 93.1 0 .........................G..G | A [4001910] ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGGGAGACCGTCCCCGCGCGGTGTGCGCGGGTATCACTGCTGCCGCCCCTGGACGGTCTTGGCGCTGGAGCCCATCATCTACCCGGAGCGCTTGATGGGTGCTTAGGTGCGCCGTGCGGCGGCCGTTGTGTGCAATCGCCGCCTGACTATTCCTTCAGCGACCAAGGAAGAGCTTGAGACGCATGATCGACAGGGACAACGCCCTGCGAAGTGCTGTGTGGTTCACTTCCAGCTACAGCAACGACCAGGGGGGCGCCTGTGTGGAGGGGGCGCGGCTCGCCGGGGATGCGATGGGGGTCCGCGACTCCAAGGACACCTCTGGTCCGGCCTTCATCTTCGCCAGGCGGGCTTGGGAAGGCTTCCTGACAGCCATGACAACCGGTGAACTCCGTCCGTAACTCGCCACGACGCTTGTTATGGCCAATTCGCGAAGAAGGCCGGACTCTGCGAAGTTCATGGATTCTCCGACCCACGCCGCATAAACCCGCAGGTCGGCGAGT # Right flank : GGGGGTGGGTCAGTTGGTGGGCCTGTTGTGTTCCCTTGCTTCGGCTGTCTCTCGGCGGGAGCCTGCTCGGCGGGACATGCGGAGCAGTAGGACCGAGATCGCTGCCAGGAGGACCAAGGCGATGCCCACCACCACGTCCACCGCCCTTGAGCTTTCGGTCACCTCGGTGTTCCGCAGGCCGATCACCCATGGTGAGGCGATCATCCAGGCGCCCAGGACCAGCAGGGCCGCGTCGGCCCACTTGCCGGGGTAGTGGGAGAACCGGACGATGCCGAGCAGGATCACCACGATCCCGACGCCCAGCTCGTTCCGGGACGCCTCCTTCGCCGCGTCGGGTGTGTCCGCGATCCACGGCGCGACGCACAGGACCACCCCGGCCGCGATCGTGAACAGTCCGATGAGCTCCTGCCGCTCCCCCCGGAACAGGGCCTCCTTGTACCGCGCCAGCGATGCCTCGGACCGGCCCGACCGGTCCGACCGGGCACGGGACGTCTGTGCTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 5204797-5205374 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5204797 29 100.0 32 ............................. CTCAGCCCGCAGGATGCGGCGGCGCTCCAGGG 5204858 29 100.0 32 ............................. AACTCGTCGACGGCGCTCGTCAGACGCGGGTC 5204919 29 100.0 32 ............................. CGGGACTTGAGGTAGCCGATGCCGGAGTCCTT 5204980 29 100.0 32 ............................. GGGTGACGCTCACTGGCGTCGAGCCTCTGCTC 5205041 29 100.0 32 ............................. CAGGCGCTCGTCTTCCTCCTTCAACTCCGGGG 5205102 29 100.0 32 ............................. GCCGTCGCCGCGAGATCGCTGAACTGCGGCAC 5205163 29 96.6 32 ............................T CAGGCACCTACGGGAGGGGGGTCCCTCTCCCG 5205224 29 100.0 32 ............................. ACCCATAAGTCCGCGGTCCACCTGGAGATGCG 5205285 29 100.0 32 ............................. GACACCCGGCTCGTGCAGGGCGCTGCGGGAAC 5205346 29 89.7 0 ............T..............GA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCGCGACGATGCTCTAACGGTTCGCCGGTTGAATCGTCTTCACCGTAATCTGCGGAGTGCTGCACTGACGCAAGAAGAAAGCCTTGAGCGGATCGAGCAAGTCGAGAAAGAGATGATCTGAATGCCCGAACGGACCGACATGCACGCAGCCGATCTGCGGGGTATCGCCTGGCGCACGAGTTCTTTCACGGCGAACGACAGCAACTGTGTCGAGGTCGGTATGGGTGGGAGTGCGCCGGTGATCGGGGTACGCGATACCAAGGACCGGCGGGCTGCTCCCGCTTACGTCTCATGCGCTGCGTGGCGTTCGTTCATCAGCGCGGCCAAGGGCGGCGCGTTCGACGTCCCGGCCGCAGGCTGAACGTGACCCAATGAGTGCGGGTCTACACGGGCGTTCTCGCACCCGGAGGGACATCAGGACCCCTTTGCTACGAATGCCGGACTCGGCGAAGTTCATGTTTTCCGGCCTCTCCGCCGCCTAAAACCCCAGGTCGGCGAGT # Right flank : ATTCGTGTCACCGGATGAGGTGTGCGATCCGCGCTGCGGCCGAACGATGAGTGCGGCCCGGGGTACCCGAGTAATGAATGTCCCCCCAAGAGATGAGGGAAGCGTGCAGTTGGAGCCCGCGCCAGAGCTGTGGCCCCTGATGCGTGCCCACACCGGGGAGGTGACGGAGGTAAGGCATCTGCGGGAAGCCGAACGTTCTCATTTCACCGGGTTGGTGAAGGGCGAGGCCGGGCAGTTCTTCGTCAAGGGCATGTGGAATCGCCCGGGAGGCAGAAGGGACTCGATCATTCGAGAACGGCTGATCAATCGGTATGTTCAGCCGGTCTCGCCCGTGTTGCGCTGGGCGGTGGAAGACAGAGACTGGATCCTCCTCGGGTTTGAGCTGGTTGACGGCCGGCACGCTGATTTCGATCCGGGATCACCCGATCTGCCGCTGGTCGCGGATGCGCTGAACCGCATCAGTGCGCTGGCGTGTCCACCGGTCGCCCAAGAATGGCGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 5206359-5206754 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5206359 29 100.0 32 ............................. CGGACGTGCCGACGTGCGTGGGGGCGCCCGCC 5206420 29 100.0 32 ............................. GACAGCGACGGCGCCGGGTCTGACCACCCGAC 5206481 29 100.0 32 ............................. GATCTGGCCCCGTCGGCTGACGAAGCACTGGA 5206542 29 100.0 32 ............................. TGCTCCTCCTGGCCCAGGAACAGGCGGCCGAT 5206603 29 100.0 32 ............................. TGCGCGATCTGCACGGCGCGTTCCGGCTGTGA 5206664 29 100.0 32 ............................. GCGCCGCGGTACTCCCGCTCGTGCGCGTCCTT 5206725 29 93.1 0 ...........................TG | G [5206748] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCCAAGAATGGCGTGAAAACAGGTGGAACCGGTTCGTCGGAGATGACGAGGCCCGGATGTTCCGGGGCGACGCACTTCTTCATGCGGATATCCACCCGCGCAACGTACTTATCAGGGACGACCGAGCCTGGGTCGTGGACTGGTCGTGGCCCACACGCGGCGCGGGGTTCATCGACCCGTCCATGCTCGCCGTGCAGCTCGTCTCCGCCGGCCATACCGCCGAGGAGGCCGATTCCTGGCTGACTGGGAACGCAGCATGGGACAGCGCAGACCGCAGGGCCGTCGACGCCTTCGCGCGTGCCATGGTCCGCATGTGGCGCGAGATGGCCGAACGGCGTGGAGACGAATCCTGGTTGCGAGCCATGGTGGCCGCTGCCGAAGCCTGGGCGGATCACCGGGGTGTGGCCACAAACTGATCACCCCATACGCCAAGAATGCCGGACTCGGCGAAGTTCATGTTTTCCGGCCTCTCCGCCGCCTAAAACCCCAGGTCGGCGAGT # Right flank : GACCCACGTTCTCTGTCGGTGTTTCCTGCTGTTCTGGCCGTCGGTGTACGGGAAGTGGGCGGTTTTTGCGTTTGTTTGGCCGGTCGTGGCGGGTTGGGGGTGAGGGCGGGGTAGGTCTCCCCGCCGGCCGGGATGGGTTCGGCCGTGCGTGCGCGCCGTAGCGCGTGATCGGGACCAGTGAAGAGGAGCCTCGCTCGATGACCCCCACGCCACTGTTACGCCGCCCGGCCGCTCTGTTCCGGGGCGCGGCCGTCGTCCTGGCCGCCGTTCTCGCCGTGCTGACCGTTCAGGCCGTCCCGGCGGCGGCCGAGGAGATCTGCGGGCAGCAGGTCGGTGGCGAAATCCTGGTGAAGTACGACCAGATGGGGCGCCAGACCTCCCCACTGGGCTGTCCGACGTCCGGCGAGCTTGTCACCCCGGACGGGCGGGGTCGCTACAACACGTTCGAGCACGGCTCGATCTACTGGACCCCCACGACCGGCGCGCATCCCGTCTGGGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 5262382-5261592 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 5262381 29 100.0 32 ............................. AGCGAGAAACGCCGCTCGTTCAGGCCGTACCC 5262320 29 100.0 32 ............................. CTCCCCGGCGGTGCCCTGTGACCGCCGAGTTG 5262259 29 100.0 32 ............................. AACCTGCGGACCGCCGGGGACAACGCCCGCCG 5262198 29 100.0 32 ............................. GTTCTACGCCGGGGGCCGCCTCGACGGGCCGT 5262137 29 100.0 32 ............................. TGGCGCTCGTGGCCGCGCCGGCGGTGTCCCGC 5262076 29 100.0 32 ............................. CAGCGCATCGCCGAGTACTACGAGTACAGCGC 5262015 29 100.0 32 ............................. GCCTCCCGGGCGGCGTCGTGCATGCCGTCGTG 5261954 29 100.0 32 ............................. GTCCACTCGGGCTCGACGCCGAGGCGCTGGAG 5261893 29 100.0 32 ............................. AAGTCCGCGACGGACGTGCACCAGCTTGGCCT 5261832 29 100.0 33 ............................. TGGTCGGCTGGGAGGCCGGCGACCTTGACCGCG 5261770 29 100.0 61 ............................. CCGGGGAGACAGAACCCGGCGTACAGGCCGCCCTGCTCCCCGCGATCTCGCCCCGCTGGAG 5261680 28 96.6 32 .....................-....... GCGCCGCCGACGGAACGCCCGACCACCCCGGT 5261620 29 82.8 0 ..A.........GA............TT. | ========== ====== ====== ====== ============================= ============================================================= ================== 13 29 98.4 35 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TGGCAGGCGAACGCGGGGGTGGCCTTGCCGATGTCGTGCACGGCCGCGAGCCAGCTCACCAGCCGGCGACCGTCGGCCTCACCGTCCGGCAGCGCCTCGGCGATCAGCGCTCGCAGGTTGGCGGGCAGCCAGGTGTCCCACAACAGGCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAACCGTCACTGTCTCGCTCATGCTTGGCCCAGACACGCCGCACCGGACCGACCAGCCGCGCCGCCAGGCCGGGAGGGGCTTCCCCGGATCTCCATGCCATGGCCGCATTAGACACGCTTCGACGCAGCGCATGTGCAGCTTTCCTGAAAGTCACCATGGCCCCGGCCGTACGATCGCATTACACCCGTGGCACGGAGAGGCGAGTTTGACGAACATGACCGTTTGGCGCACTTCACCCGCAATGCCGGAGTCGGCGAAGTTAAGTAAAACGGCCTACCCTCTCGCCTGAACCCGCAGCTCACGGAGT # Right flank : CTTTGGGGTCAGGCTGGTGTGTGGTGGGGTTCTTCGGCTGTCAGGGGGGTTGCGATGTCTTCCAGGCCCTTGCGTTCTGCCTTCACGCCGAGGAACACCTCCACCAGGCCCGCCAGGACCATCAGTGCCGCGCCGATGCAGAAGGCGAGGGTTGTCTCGCTGCGGATGCCGCTCTCGGTCAGGCTCGCGAAGAGCAGGGGGCCGCTGATTCCGCCCGCTGCCGTGCCCACCGCGTAGAAGAACGCGATCGCCATCGCGCGGGTCTCCATCGGGAAGACCTCGCTCACCGTCAGGTAGGCCGACGACGCTCCGGCCGAGGCGAAGAACAGAGCCACGGTCCAGCAGGCCGTCAGGGTGTTCGCCGACAGCACGTCCTGCTGGAACAGGTACGCCGTGCCGAACAGCAGCAGGCCGGACAGGATGTAGGTTCCCGCGATCATCGGTTTGCGGCCCACCGAGTCGAAGAAGCGGCTCAGCAGCAGCGGGCCGAAGAAGTTGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 5271877-5272697 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5271877 29 96.6 32 ............................T CCGCACGGCCTGTGGACCGAGCAGGACCGTCA 5271938 29 100.0 32 ............................. GGCGCTGGTGACATGGCGGGAGCACGTCGCGA 5271999 29 100.0 32 ............................. TTGGGTCGGCGTTCACGCGGTCCGCTGAGTAC 5272060 29 100.0 32 ............................. TGATCATTCAGGCGGTAGCGATCCGTGATCAC 5272121 29 100.0 32 ............................. GGATGAGGAACGCCCCCTCGTCATCATGCTGG 5272182 29 100.0 32 ............................. GCGGGGATGGTGCGGGCCTCCGCACCGGCCCG 5272243 29 100.0 32 ............................. TCGCCAAGGACACGGTTCGCGTACATCGCGGA 5272304 29 100.0 32 ............................. AGCCCCACCGTCGGGACACAGCACGTCCCGCA 5272365 29 100.0 32 ............................. CGCAGCGCGGCGCTGGCATCCGACTGATGGGC 5272426 29 100.0 32 ............................. CCCGACTTCGAGGTCAACATGATGACGGGCGA 5272487 29 100.0 32 ............................. AAGACGGCCGGCCCCGGGATTGGGCACCGAGG 5272548 29 100.0 32 ............................. GCGACATGGGTGACGACGTCCTGGATGGTGCC 5272609 29 100.0 32 ............................. ACCGCCGCCAACCTGCTCCCCGGCCCCTACTT 5272670 28 89.7 0 ............T.........C..-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCGGGGCACGGCGGTGGCCTCCGGGCTCAACTACGACGAGGAGCCGGGCTGGTGACGGTGATCGTCCTGACGAACTGCCCGGCGGGGCTGAGGGGTTTCCTCACACGCTGGCTTCTCGAAATCTCGGCGGGCGTGTTCATCGGGAGCCCGTCCGCGCGTGTACGCGACGTGCTGTGGGACGAGGTACGGCAGTACGCCGGCCAGGGCCGCGCACTCCTGGCACACACGGCGAACAACGAGCAGGGCTACATCTTCCGCACACACGACCACGCATGGCACCCGACAGACCACGAGGGCCTGACACTGATCCACCGCCCATCGACCCCGCCACCCAACAGCGGGACCGGACCGAAAAAGGGCTGGAGCAAGGCGGCCAAACAACTCCGCTACGGCAGACGATGACACCAGGCACCAATCACCCGTTCCACACCAAATGCCCGACTCCCCGAAGTTAAGTAAAACCAGCCCCACGACGCCGAAACACCGCAGCTCAACGAGA # Right flank : CATGTGGACCGCTCGTGTTCGTCACTCGGATGTGCTGGTGGCCGGTGGTGTCTCCAGTGCGAAGAGCATGAAGCACATCTTCGTCGAGAGGTCGTCGAACTCGTCGGGGTACAGCTCGCGGGCGGCCGGGTCGGGTCGTGGTTCGCTGATGACTGTCAGGCGGAAGCCGGCCGCTGTGAAAGCTTCGGTCATCGCGTGCAGTGGTCTGCGCCAGAAGGTCATCGGGGCGGGTTGGCCCACGAAGTCGTCCCATTCGTACGTGTAGCTGGTGGTCGCGTGGTAGTCGGGCCGAGGATTCTGCATCGCGTAGTCCACGAAAGGGTGCTGCACCGAAGCGATCAGGCGTCCGCCGGGCCTGAGTACTCGCCGCATCTCTGCCAGCGTCGGCCCCCAGTCCTCCAGGTAGTGCAGCACCAGCGAGGCGACGACATCGTCGAACGCGTCGTCGGCGAACGGCAGCGGGTCGCTCAGGTCGGCCACGTGCAGGGCCGCGTCCGCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 5677851-5678550 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUH01000001.1 Streptomyces sp. RFCAC02 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5677851 29 100.0 32 ............................. ACCCACTCCGTCGCGGAGCCCGGGTCCTCGGC 5677912 29 100.0 32 ............................. GGACTGGGGTGCCCGTTGTCGGCGTGGTCGTA 5677973 29 100.0 32 ............................. TCCTCGTCGCGGGCCGCCCAGGCCGCGTCCTC 5678034 29 100.0 32 ............................. GACTCACCGAAGCAAGGCCGTTGGAAGCGACT 5678095 29 100.0 32 ............................. GTCCAGCCTGACACGAACGTGAACGCCAGCGT 5678156 29 100.0 32 ............................. GGAGCACACCAGATGACGTGGCGCAAGCCCGT 5678217 29 100.0 32 ............................. CCGCAGACCGGGCGCGCACAGCACGGCATCAC 5678278 29 100.0 32 ............................. GCCCAGTCGAGCGTCGACTCCCCCACGGGCGT 5678339 29 100.0 32 ............................. GGGGTGCTTTGCGGAAGTACGAAGCACCAGGG 5678400 29 100.0 32 ............................. CGGCCCCGGTCGCGGACGTGCCGCAGCAGGAG 5678461 29 100.0 32 ............................. GGCATCGCCATCCGGGCCATTCGTCGCGGCAC 5678522 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGCTCGTTCGACCTGGTGTCGGCGCAGTTCCTCCACTCGTGGAGCGACATGCCGCGCGACCGCATCCTGCGCGCGGCGGCGGCCGCCGTGGCACCGGGCGGGACTCTGCTGATCGAGGGCCACTCGACGGGACCGTCGTGGGAGGAGGAACACCCCGACATCCACCTCCCGACCCCGTCGGAAGTGGTCGCGTCCCTGGAACTGCCGGACGACGAATGGGAGATCCAGCGGGCGGAACACCACGAACGGGTGCAGCTCAGCCCCGACGGCGAAGCGGGAACACGCACGGACAACACGGTGAAACTGCGCCGCCGCACACACTGACCCCACCCCGGAGGCCCGTCCACCCCCGGACGGGCCTCCGCCCGACACCCACTTGAGCTACGGTGCCCCCGGGACGAAGCGGCGGAAGGAGGCGTCCGATTGGCACGAAATGCCGGACTCAACGAAGTTCAGGATTTCGGCACTCAGCGCGACGGAAACCCGCAGTTCAGCGAGT # Right flank : CGTCGGGGTCAGAGTTGTGTGTTTGGGATGTAGCCCAGGTCTACCGGCTGTGTTGGTGCTCTGCCGGTGGTGCGTACTGATTCCAGCAGGTCCGGTAGCTGTGGTGGCCACAGTGCTTCTGTTGCCGCCGCCAGTGCCTCCGGGGTCCACCAGCGCCAGTGCAGGATGCCGTCCTCCTCGTGGGCTGCCGTCAGGTCGCCCACCGGGTCGCGGCGTGGGCCGTAGGCCAGGAAGATGTCCTCGCTCTGCCGTACGGGCACTCCCGACCGTGTGTAGTCGTGCTCCCAGCGGCACAGTGTTCCGCGCAGTGTGAGGCCGCTCCAGCCCGTCTCCTCGCGTACCTCCCGTGCCGCTGCCGCCTCCGGGGTCTCGCCCGGGTCGAGGCCGCCGCCCGGGGGCGCCCAGTGGACGCCGACCTCCTCGTTGTCGTAGCGGAACATGAACACCGAGCCGTCGGGAGCGAGAACGGCGACGCGGGCCGCCTGTCGTGGAATGCGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //