Array 1 1598-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJJ01000078.1 Escherichia coli strain ECSC071 sequence078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1597 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1536 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1475 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 1414 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 1353 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 1292 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 1231 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 1170 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 1109 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 1048 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 987 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 926 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 865 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 804 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 743 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 682 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 621 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 560 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 499 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 438 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 377 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTTAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8644-9404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJJ01000132.1 Escherichia coli strain ECSC071 sequence132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8644 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 8705 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 8766 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 8827 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 8888 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 8949 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 9010 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 9071 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 9132 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 9193 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 9254 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 9315 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9376 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //