Array 1 1321861-1321033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483348.1 Streptococcus lutetiensis strain NCTC8738 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1321860 36 100.0 30 .................................... ATTTTGAGCTTTTATCAGTCACTACAATTC 1321794 36 100.0 30 .................................... TCCTACTAGTGTGCCTAGCGGTTTCCATGG 1321728 36 100.0 30 .................................... AAGGATTGGTAAATTCTGCTCGTAGTGGTG 1321662 36 100.0 30 .................................... AAAGAAAAATCGTAACAACTCAAATGACAT 1321596 36 100.0 30 .................................... ATGAAATGGTAGGAGCTTACGACTCTGGAA 1321530 36 100.0 30 .................................... CATACTCAGAAAGAGATAGACCTACTTCAA 1321464 36 100.0 30 .................................... AGACACTTGCCGAGGCTAGACACGCGCTTG 1321398 36 100.0 30 .................................... GTGACGTTTTTAGTGATTGGCAACCAGCTC 1321332 36 100.0 30 .................................... GAATTAAGTTGACGTCAACTGTCGCAAGTG 1321266 36 100.0 30 .................................... CTCAAATGCCACAAGGTATGGAAGAATAAA 1321200 36 100.0 30 .................................... GCTGACCTTACTAAATTCGACTTCGGTGTT 1321134 36 100.0 30 .................................... TAACTTCTTCATCATAATCAACTACTTTGC 1321068 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1323692-1322463 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483348.1 Streptococcus lutetiensis strain NCTC8738 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1323691 36 100.0 30 .................................... AACCAGAAATTGATTTTATTTATACAGTGT 1323625 36 100.0 30 .................................... AGTTACATTACCTGAGTAGTTCATTGCACC 1323559 36 100.0 29 .................................... TATTCGCAGAAAATATACAGACGTAGGAA 1323494 36 100.0 30 .................................... TTATTAACCCAGCTTTGTTTCCTCTTAGGT 1323428 36 100.0 30 .................................... CTATTGAACCCGTGGAATGTGTGGGGATTT 1323362 36 100.0 30 .................................... CAGCTTGATAGTGATTGATGGTCATTAATT 1323296 36 100.0 30 .................................... TAAAGATTAAGACCCCCTTTATAAAATGAA 1323230 36 100.0 30 .................................... ATGAATCATATTACAGAAATCCAATACATG 1323164 36 100.0 30 .................................... AGGTTTTAGTTTTAAAACCAAATTTCAAAT 1323098 36 100.0 30 .................................... AAATCCTAACTCAGATAATCATTTAGTACT 1323032 36 100.0 30 .................................... AGACGATGTTATCGTCAGACCAAACGATTT 1322966 36 100.0 30 .................................... CTTCTGTCAATGGTTTACCATCAAAAGCCA 1322900 36 100.0 30 .................................... TGCTAATCAAATCAACATCTGCATCGTCAA 1322834 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 1322768 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 1322702 36 100.0 30 .................................... CAGTTGATGATTCGTATTTTGCTTTCATCG 1322636 36 100.0 30 .................................... TTTCCGTCTTTAAGAGTATCAAGAATTTGG 1322570 36 100.0 30 .................................... TTGTTTAATCCCACCAGACAACACCACTAA 1322504 36 88.9 0 ....................T...AAA......... | T,AAT,C,A [1322468,1322470,1322475,1322477] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATGGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTAGGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGTAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : TGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //